Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-23 17:31:04 (5456): Detected: vboxwrapper 26206
2025-02-23 17:31:04 (5456): Detected: BOINC client v7.16.20
2025-02-23 17:31:05 (5456): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-02-23 17:31:05 (5456): Successfully copied 'init_data.xml' to the shared directory.
2025-02-23 17:31:06 (5456): Create VM. (boinc_2789a689955afbd7, slot#2)
2025-02-23 17:31:06 (5456): Setting Memory Size for VM. (4800MB)
2025-02-23 17:31:06 (5456): Setting CPU Count for VM. (8)
2025-02-23 17:31:07 (5456): Setting Chipset Options for VM.
2025-02-23 17:31:07 (5456): Setting Graphics Controller Options for VM.
2025-02-23 17:31:07 (5456): Setting Boot Options for VM.
2025-02-23 17:31:07 (5456): Setting Network Configuration for NAT.
2025-02-23 17:31:08 (5456): Enabling VM Network Access.
2025-02-23 17:31:08 (5456): Disabling USB Support for VM.
2025-02-23 17:31:08 (5456): Disabling COM Port Support for VM.
2025-02-23 17:31:08 (5456): Disabling LPT Port Support for VM.
2025-02-23 17:31:09 (5456): Disabling Audio Support for VM.
2025-02-23 17:31:09 (5456): Disabling Clipboard Support for VM.
2025-02-23 17:31:09 (5456): Disabling Drag and Drop Support for VM.
2025-02-23 17:31:09 (5456): Adding storage controller(s) to VM.
2025-02-23 17:31:10 (5456): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-23 17:31:10 (5456): Adding VirtualBox Guest Additions to VM.
2025-02-23 17:31:10 (5456): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-23 17:31:11 (5456): forwarding host port 53221 to guest port 80
2025-02-23 17:31:11 (5456): Enabling remote desktop for VM.
2025-02-23 17:31:11 (5456): Required extension pack not installed, remote desktop not enabled.
2025-02-23 17:31:11 (5456): Enabling shared directory for VM.
2025-02-23 17:31:12 (5456): Starting VM using VBoxManage interface. (boinc_2789a689955afbd7, slot#2)
2025-02-23 17:31:16 (5456): Successfully started VM. (PID = '7216')
2025-02-23 17:31:16 (5456): Reporting VM Process ID to BOINC.
2025-02-23 17:31:16 (5456): Guest Log: BIOS: VirtualBox 6.1.50
2025-02-23 17:31:16 (5456): Guest Log: CPUID EDX: 0x178bfbff
2025-02-23 17:31:16 (5456): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-23 17:31:16 (5456): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-23 17:31:16 (5456): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-23 17:31:16 (5456): Detected: Web Application Enabled (http://localhost:53221)
2025-02-23 17:31:16 (5456): Preference change detected
2025-02-23 17:31:16 (5456): Setting CPU throttle for VM. (100%)
2025-02-23 17:31:17 (5456): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 80 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-23 17:31:18 (5456): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-23 17:31:18 (5456): Guest Log: BIOS: Booting from Hard Disk...
2025-02-23 17:31:21 (5456): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-23 17:31:21 (5456): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-23 17:31:21 (5456): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-23 17:31:31 (5456): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-23 17:31:31 (5456): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-23 17:31:37 (5456): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-23 17:31:37 (5456): Guest Log: 00:00:00.000143 main     Log opened 2025-02-23T17:31:35.423816000Z
2025-02-23 17:31:37 (5456): Guest Log: 00:00:00.000235 main     OS Product: Linux
2025-02-23 17:31:37 (5456): Guest Log: 00:00:00.000254 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-23 17:31:37 (5456): Guest Log: 00:00:00.000270 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-23 17:31:37 (5456): Guest Log: 00:00:00.000286 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-23 17:31:37 (5456): Guest Log: 00:00:00.000286 main     Process ID: 1366
2025-02-23 17:31:37 (5456): Guest Log: 00:00:00.000287 main     Package type: LINUX_64BITS_GENERIC
2025-02-23 17:31:37 (5456): Guest Log: 00:00:00.000790 main     5.2.32 r132073 started. Verbose level = 0
2025-02-23 17:31:37 (5456): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-23 17:31:37 (5456): Guest Log: [INFO] Mounting shared directory
2025-02-23 17:31:37 (5456): Guest Log: [INFO] Checking for init_data.xml
2025-02-23 17:31:39 (5456): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-23 17:31:39 (5456): Guest Log: [INFO] Detected branch: prod
2025-02-23 17:31:39 (5456): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-23 17:31:39 (5456): Guest Log: Copying input files
2025-02-23 17:31:40 (5456): Guest Log: Copied input files into RunAtlas.
2025-02-23 17:31:40 (5456): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-23 17:31:40 (5456): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-23 17:31:40 (5456): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-23 17:31:40 (5456): Guest Log: Further information can be found at the LHC@home message board.
2025-02-23 17:31:47 (5456): Guest Log: 00:00:10.014235 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 729 193 000ns (GuestNow=1 740 328 306 696 351 000 ns GuestLast=1 740 331 895 425 544 000 ns fSetTimeLastLoop=true )
2025-02-23 17:31:47 (5456): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-23 17:31:48 (5456): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-23 17:31:48 (5456): Guest Log: 2.6.3.0 1644 0 30160 142982 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-23 17:31:49 (5456): Guest Log: copied the webapp to /var/www
2025-02-23 17:31:49 (5456): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-23 17:31:49 (5456): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-23 17:31:49 (5456): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-23 17:31:49 (5456): Guest Log:  *** Starting ATLAS job. (PandaID=6523541899 taskID=43078919) ***
2025-02-23 19:11:28 (5456): Status Report: Elapsed Time: '6000.000000'
2025-02-23 19:11:28 (5456): Status Report: CPU Time: '40683.796875'
2025-02-23 20:06:43 (5456): Guest Log:  *** Job finished ***
2025-02-23 20:06:43 (5456): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:28,798 | INFO     | [payload] failed_post thread has finished
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:29,525 | INFO     | [data] copytool_out thread has finished
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:30,497 | INFO     | [data] queue_monitor thread has finished
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:32,429 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139911742224192)>', '<ExcThread(monitor, started 139910564538112)>']
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:32,599 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:32,599 | INFO     | [monitor] control thread has ended
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,442 | INFO     | all workflow threads have been joined
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,442 | INFO     | end of generic workflow (traces error code: 0)
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,442 | INFO     | traces error code: 0
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,442 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,515 [wrapper] ==== pilot stdout END ====
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,518 [wrapper] ==== wrapper stdout RESUME ====
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,521 [wrapper] pilotpid: 6000
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,524 [wrapper] Pilot exit status: 0
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,611 [wrapper] pandaids: 6523541899
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,633 [wrapper] cleanup supervisor_pilot  8633 6001
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,637 [wrapper] Test setup, not cleaning
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,644 [wrapper] apfmon messages muted
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,647 [wrapper] ==== wrapper stdout END ====
2025-02-23 20:06:43 (5456): Guest Log: 2025-02-23 19:06:37,650 [wrapper] ==== wrapper stderr END ====
2025-02-23 20:06:43 (5456): Guest Log:  *** Error codes and diagnostics ***
2025-02-23 20:06:43 (5456): Guest Log:     "exeErrorCode": 0,
2025-02-23 20:06:43 (5456): Guest Log:     "exeErrorDiag": "",
2025-02-23 20:06:43 (5456): Guest Log:     "pilotErrorCode": 0,
2025-02-23 20:06:43 (5456): Guest Log:     "pilotErrorDiag": "",
2025-02-23 20:06:43 (5456): Guest Log:  *** Listing of results directory ***
2025-02-23 20:06:43 (5456): Guest Log: total 329104
2025-02-23 20:06:43 (5456): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 23 01:31 pilot3.tar.gz
2025-02-23 20:06:43 (5456): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 23 02:12 queuedata.json
2025-02-23 20:06:43 (5456): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 23 02:12 runpilot2-wrapper.sh
2025-02-23 20:06:43 (5456): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 23 16:31 start_atlas.sh
2025-02-23 20:06:43 (5456): Guest Log: -rwxr-xr-x. 1 atlas atlas    503566 Feb 23 16:31 input.tar.gz
2025-02-23 20:06:43 (5456): Guest Log: -rwxr-xr-x. 1 atlas atlas      8762 Feb 23 16:31 init_data.xml
2025-02-23 20:06:43 (5456): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 23 16:31 EVNT.43078917._001099.pool.root.1 -> /data/./ATLAS.root_0
2025-02-23 20:06:43 (5456): Guest Log: -rw-r--r--. 1 atlas atlas      2546 Feb 23 16:31 pandaJob.out
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas       424 Feb 23 16:31 setup.sh.local
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas    987744 Feb 23 16:32 agis_schedconf.cvmfs.json
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 23 16:32 agis_ddmendpoints.agis.ALL.json
2025-02-23 20:06:43 (5456): Guest Log: drwx------. 4 atlas atlas      4096 Feb 23 16:32 pilot3
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas 331033573 Feb 23 19:05 HITS.43078919._090306.pool.root.1
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas        95 Feb 23 19:05 pilot_heartbeat.json
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas      1026 Feb 23 19:06 memory_monitor_summary.json
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas    343480 Feb 23 19:06 log.43078919._090306.job.log.tgz.1
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas      7707 Feb 23 19:06 heartbeat.json
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas      4275 Feb 23 19:06 pilotlog.txt
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas    770833 Feb 23 19:06 log.43078919._090306.job.log.1
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas       357 Feb 23 19:06 output.list
2025-02-23 20:06:43 (5456): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 23 19:06 runtime_log
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas   1136640 Feb 23 19:06 result.tar.gz
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas       654 Feb 23 19:06 VxDNDmBfG66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmftuKDmuSmoom.diag
2025-02-23 20:06:43 (5456): Guest Log: -rw-r--r--. 1 atlas atlas     10935 Feb 23 19:06 runtime_log.err
2025-02-23 20:06:43 (5456): Guest Log: Looking for outputfile HITS.43078919._090306.pool.root.1
2025-02-23 20:06:43 (5456): Guest Log: HITS file was successfully produced
2025-02-23 20:06:43 (5456): Guest Log: -rw-------. 1 atlas atlas 331033573 Feb 23 19:05 /home/atlas/RunAtlas/HITS.43078919._090306.pool.root.1
2025-02-23 20:06:44 (5456): Guest Log: Successfully finished the ATLAS job!
2025-02-23 20:06:44 (5456): Guest Log: Copying the results back to the shared directory!
2025-02-23 20:06:44 (5456): Guest Log:  *** Contents of shared directory: ***
2025-02-23 20:06:44 (5456): Guest Log: total 659832
2025-02-23 20:06:44 (5456): Guest Log: -rwxrwxrwx. 1 root root 342954785 Feb 23 16:31 ATLAS.root_0
2025-02-23 20:06:44 (5456): Guest Log: -rwxrwxrwx. 1 root root 331033573 Feb 23  2025 HITS.pool.root.1
2025-02-23 20:06:44 (5456): Guest Log: -rwxrwxrwx. 1 root root      8762 Feb 23 16:31 init_data.xml
2025-02-23 20:06:44 (5456): Guest Log: -rwxrwxrwx. 1 root root    503566 Feb 23 14:04 input.tar.gz
2025-02-23 20:06:44 (5456): Guest Log: -rwxrwxrwx. 1 root root   1136640 Feb 23  2025 result.tar.gz
2025-02-23 20:06:44 (5456): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 14:04 start_atlas.sh
2025-02-23 20:06:44 (5456): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-23 20:06:44 (5456): VM Completion File Detected.
2025-02-23 20:06:44 (5456): Powering off VM.
2025-02-23 20:06:45 (5456): Successfully stopped VM.
2025-02-23 20:06:45 (5456): Deregistering VM. (boinc_2789a689955afbd7, slot#2)
2025-02-23 20:06:45 (5456): Removing network bandwidth throttle group from VM.
2025-02-23 20:06:45 (5456): Removing VM from VirtualBox.
20:06:51 (5456): called boinc_finish(0)

</stderr_txt>
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