Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:06:43 (266253): wrapper (7.7.26015): starting
09:06:43 (266253): wrapper: running run_atlas (--nthreads 9)
[2025-02-23 09:06:43] Arguments: --nthreads 9
[2025-02-23 09:06:43] Threads: 9
[2025-02-23 09:06:43] Checking for CVMFS
[2025-02-23 09:06:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-23 09:06:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-23 09:06:43] Running cvmfs_config stat atlas.cern.ch
[2025-02-23 09:06:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-23 09:06:44] 2.11.5.0 2926161 75019 314648 142977 2 467 9674631 37641217 15029 130560 0 287749 92.449 3246060 32414 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.237:6081 1
[2025-02-23 09:06:44] CVMFS is ok
[2025-02-23 09:06:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-23 09:06:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-23 09:06:44] Further information can be found at the LHC@home message board.
[2025-02-23 09:06:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-23 09:06:44] Checking for apptainer binary...
[2025-02-23 09:06:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-23 09:06:44] Running /usr/bin/apptainer --version
[2025-02-23 09:06:44] apptainer version 1.3.6-1.el9
[2025-02-23 09:06:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-23 09:06:44] c6-6-39-2.aglt2.org
[2025-02-23 09:06:44] apptainer works
[2025-02-23 09:06:44] Set ATHENA_PROC_NUMBER=9
[2025-02-23 09:06:44] Set ATHENA_CORE_NUMBER=9
[2025-02-23 09:06:44] Starting ATLAS job with PandaID=6523977512
[2025-02-23 09:06:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-23 13:16:44]  *** The last 200 lines of the pilot log: ***
[2025-02-23 13:16:44] 2025-02-23 18:16:27,796 | INFO     | sum of deviations: 127418081986.19995
[2025-02-23 13:16:44] 2025-02-23 18:16:27,797 | INFO     | mean x: 1740326934.6
[2025-02-23 13:16:44] 2025-02-23 18:16:27,797 | INFO     | mean y: 2204858.575
[2025-02-23 13:16:44] 2025-02-23 18:16:27,797 | INFO     | -- intersect: -51728461460.06121
[2025-02-23 13:16:44] 2025-02-23 18:16:27,797 | INFO     | intersect: -51728461460.06121
[2025-02-23 13:16:44] 2025-02-23 18:16:27,797 | INFO     | chi2: 5.156578359972617
[2025-02-23 13:16:44] 2025-02-23 18:16:27,797 | INFO     | current chi2=5.156578359972617 (change=11.452337757432229 %)
[2025-02-23 13:16:44] 2025-02-23 18:16:27,797 | INFO     | right removable region: 239
[2025-02-23 13:16:44] 2025-02-23 18:16:27,798 | INFO     | model: linear, x: [1740319950.0, 1740320011.0, 1740320072.0, 1740320133.0, 1740320194.0, 1740320255.0, 1740320316.0, 1740320377.0, 1740320438.0, 1740320499.0, 1740
[2025-02-23 13:16:44] 2025-02-23 18:16:27,798 | INFO     | sum of square deviations: 4286593977.599977
[2025-02-23 13:16:44] 2025-02-23 18:16:27,800 | INFO     | sum of deviations: 60352040687.20002
[2025-02-23 13:16:44] 2025-02-23 18:16:27,800 | INFO     | mean x: 1740327239.6
[2025-02-23 13:16:44] 2025-02-23 18:16:27,800 | INFO     | mean y: 2228133.845833333
[2025-02-23 13:16:44] 2025-02-23 18:16:27,800 | INFO     | -- intersect: -24500279200.004402
[2025-02-23 13:16:44] 2025-02-23 18:16:27,800 | INFO     | intersect: -24500279200.004402
[2025-02-23 13:16:44] 2025-02-23 18:16:27,801 | INFO     | chi2: 3.335062760207374
[2025-02-23 13:16:44] 2025-02-23 18:16:27,801 | INFO     | current chi2=3.335062760207374 (change=42.73101459275089 %)
[2025-02-23 13:16:44] 2025-02-23 18:16:27,801 | INFO     | model: linear, x: [1740320255.0, 1740320316.0, 1740320377.0, 1740320438.0, 1740320499.0, 1740320560.0, 1740320621.0, 1740320682.0, 1740320743.0, 1740320804.0, 1740
[2025-02-23 13:16:44] 2025-02-23 18:16:27,801 | INFO     | sum of square deviations: 4024218947.548933
[2025-02-23 13:16:44] 2025-02-23 18:16:27,803 | INFO     | sum of deviations: 20466786399.672363
[2025-02-23 13:16:44] 2025-02-23 18:16:27,803 | INFO     | mean x: 1740327392.1021276
[2025-02-23 13:16:44] 2025-02-23 18:16:27,803 | INFO     | mean y: 2251332.055319149
[2025-02-23 13:16:44] 2025-02-23 18:16:27,803 | INFO     | -- intersect: -8848884618.524067
[2025-02-23 13:16:44] 2025-02-23 18:16:27,804 | INFO     | intersect: -8848884618.524067
[2025-02-23 13:16:44] 2025-02-23 18:16:27,804 | INFO     | chi2: 2.0900690980671692
[2025-02-23 13:16:44] 2025-02-23 18:16:27,804 | INFO     | current chi2=2.0900690980671692 (change=37.33044178343412 %)
[2025-02-23 13:16:44] 2025-02-23 18:16:27,804 | INFO     | model: linear, x: [1740320560.0, 1740320621.0, 1740320682.0, 1740320743.0, 1740320804.0, 1740320865.0, 1740320926.0, 1740320987.0, 1740321048.0, 1740321109.0, 1740
[2025-02-23 13:16:44] 2025-02-23 18:16:27,804 | INFO     | sum of square deviations: 3772774354.995655
[2025-02-23 13:16:44] 2025-02-23 18:16:27,806 | INFO     | sum of deviations: -16758046036.417389
[2025-02-23 13:16:44] 2025-02-23 18:16:27,806 | INFO     | mean x: 1740327544.604348
[2025-02-23 13:16:44] 2025-02-23 18:16:27,806 | INFO     | mean y: 2273825.0173913045
[2025-02-23 13:16:44] 2025-02-23 18:16:27,806 | INFO     | -- intersect: 7732523865.629345
[2025-02-23 13:16:44] 2025-02-23 18:16:27,806 | INFO     | intersect: 7732523865.629345
[2025-02-23 13:16:44] 2025-02-23 18:16:27,807 | INFO     | chi2: 0.8800471437041646
[2025-02-23 13:16:44] 2025-02-23 18:16:27,807 | INFO     | current chi2=0.8800471437041646 (change=57.893873244764734 %)
[2025-02-23 13:16:44] 2025-02-23 18:16:27,812 | INFO     | model: linear, x: [1740320865.0, 1740320926.0, 1740320987.0, 1740321048.0, 1740321109.0, 1740321170.0, 1740321231.0, 1740321292.0, 1740321353.0, 1740321414.0, 1740
[2025-02-23 13:16:44] 2025-02-23 18:16:27,812 | INFO     | sum of square deviations: 3532027637.4400115
[2025-02-23 13:16:44] 2025-02-23 18:16:27,814 | INFO     | sum of deviations: -25839632993.05333
[2025-02-23 13:16:44] 2025-02-23 18:16:27,814 | INFO     | mean x: 1740327697.1066666
[2025-02-23 13:16:44] 2025-02-23 18:16:27,814 | INFO     | mean y: 2279532.8355555558
[2025-02-23 13:16:44] 2025-02-23 18:16:27,814 | INFO     | -- intersect: 12734181317.57795
[2025-02-23 13:16:44] 2025-02-23 18:16:27,814 | INFO     | intersect: 12734181317.57795
[2025-02-23 13:16:44] 2025-02-23 18:16:27,814 | INFO     | chi2: 0.7704625521339193
[2025-02-23 13:16:44] 2025-02-23 18:16:27,815 | INFO     | current chi2=0.7704625521339193 (change=12.452127406379384 %)
[2025-02-23 13:16:44] 2025-02-23 18:16:27,815 | INFO     | left removable region: 40
[2025-02-23 13:16:44] 2025-02-23 18:16:27,815 | INFO     | model: linear, x: [1740322085.0, 1740322146.0, 1740322207.0, 1740322268.0, 1740322329.0, 1740322390.0, 1740322451.0, 1740322512.0, 1740322573.0, 1740322634.0, 1740
[2025-02-23 13:16:44] 2025-02-23 18:16:27,815 | INFO     | sum of square deviations: 2443627450.3417196
[2025-02-23 13:16:44] 2025-02-23 18:16:27,819 | INFO     | sum of deviations: -4426462394.045228
[2025-02-23 13:16:44] 2025-02-23 18:16:27,819 | INFO     | mean x: 1740328124.115578
[2025-02-23 13:16:44] 2025-02-23 18:16:27,819 | INFO     | mean y: 2284286.175879397
[2025-02-23 13:16:44] 2025-02-23 18:16:27,819 | INFO     | -- intersect: 3154768513.515696
[2025-02-23 13:16:44] 2025-02-23 18:16:27,820 | INFO     | intersect: 3154768513.515696
[2025-02-23 13:16:44] 2025-02-23 18:16:27,820 | INFO     | chi2: 0.07378044934833548
[2025-02-23 13:16:44] 2025-02-23 18:16:27,820 | INFO     | -- intersect: 3154768513.515696
[2025-02-23 13:16:44] 2025-02-23 18:16:27,820 | INFO     | current memory leak: -1.81 B/s (using 199 data points, chi2=0.07)
[2025-02-23 13:16:44] 2025-02-23 18:16:27,821 | INFO     | ..............................
[2025-02-23 13:16:44] 2025-02-23 18:16:27,821 | INFO     | . Timing measurements:
[2025-02-23 13:16:44] 2025-02-23 18:16:27,821 | INFO     | . get job = 0 s
[2025-02-23 13:16:44] 2025-02-23 18:16:27,821 | INFO     | . initial setup = 3 s
[2025-02-23 13:16:44] 2025-02-23 18:16:27,822 | INFO     | . payload setup = 6 s
[2025-02-23 13:16:44] 2025-02-23 18:16:27,822 | INFO     | . stage-in = 0 s
[2025-02-23 13:16:44] 2025-02-23 18:16:27,822 | INFO     | . payload execution = 14916 s
[2025-02-23 13:16:44] 2025-02-23 18:16:27,822 | INFO     | . stage-out = 3 s
[2025-02-23 13:16:44] 2025-02-23 18:16:27,822 | INFO     | . log creation = 0 s
[2025-02-23 13:16:44] 2025-02-23 18:16:27,822 | INFO     | ..............................
[2025-02-23 13:16:44] 2025-02-23 18:16:28,030 | INFO     | number of running child processes to parent process 276804: 1
[2025-02-23 13:16:44] 2025-02-23 18:16:28,036 | INFO     | maximum number of monitored processes: 6
[2025-02-23 13:16:44] 2025-02-23 18:16:28,036 | INFO     | aborting job monitoring since job object (job id=6523977512) has expired
[2025-02-23 13:16:44] 2025-02-23 18:16:28,471 | INFO     | 
[2025-02-23 13:16:44] 2025-02-23 18:16:28,473 | INFO     | job summary report
[2025-02-23 13:16:44] 2025-02-23 18:16:28,473 | INFO     | --------------------------------------------------
[2025-02-23 13:16:44] 2025-02-23 18:16:28,473 | INFO     | PanDA job id: 6523977512
[2025-02-23 13:16:44] 2025-02-23 18:16:28,473 | INFO     | task id: 43205075
[2025-02-23 13:16:44] 2025-02-23 18:16:28,473 | INFO     | errors: (none)
[2025-02-23 13:16:44] 2025-02-23 18:16:28,473 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-23 13:16:44] 2025-02-23 18:16:28,473 | INFO     | pilot state: finished 
[2025-02-23 13:16:44] 2025-02-23 18:16:28,473 | INFO     | transexitcode: 0
[2025-02-23 13:16:44] 2025-02-23 18:16:28,473 | INFO     | exeerrorcode: 0
[2025-02-23 13:16:44] 2025-02-23 18:16:28,473 | INFO     | exeerrordiag: 
[2025-02-23 13:16:44] 2025-02-23 18:16:28,473 | INFO     | exitcode: 0
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | exitmsg: OK
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | cpuconsumptiontime: 83668 s
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | nevents: 400
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | neventsw: 0
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | pid: 276804
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | pgrp: 276804
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | corecount: 9
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | event service: False
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | sizes: {0: 2383197, 1: 2383396, 5: 2383602, 11: 2383658, 14926: 2414175, 14927: 2414174, 14931: 2423355, 14955: 2423469}
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | --------------------------------------------------
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | 
[2025-02-23 13:16:44] 2025-02-23 18:16:28,474 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-02-23 13:16:44] 2025-02-23 18:16:28,524 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,524 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,524 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,524 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,524 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,524 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-23 13:16:44] 2025-02-23 18:16:28,525 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,526 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-23 13:16:44] 2025-02-23 18:16:28,526 | INFO     | job 6523977512 has completed (purged errors)
[2025-02-23 13:16:44] 2025-02-23 18:16:28,526 | INFO     | overall cleanup function is called
[2025-02-23 13:16:44] 2025-02-23 18:16:29,552 | INFO     | --- collectZombieJob: --- 10, [276804]
[2025-02-23 13:16:44] 2025-02-23 18:16:29,553 | INFO     | zombie collector waiting for pid 276804
[2025-02-23 13:16:44] 2025-02-23 18:16:29,553 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-23 13:16:44] 2025-02-23 18:16:29,553 | INFO     | collected zombie processes
[2025-02-23 13:16:44] 2025-02-23 18:16:29,553 | INFO     | will attempt to kill all subprocesses of pid=276804
[2025-02-23 13:16:44] 2025-02-23 18:16:29,899 | INFO     | process IDs to be killed: [276804] (in reverse order)
[2025-02-23 13:16:44] 2025-02-23 18:16:30,012 | WARNING  | found no corresponding commands to process id(s)
[2025-02-23 13:16:44] 2025-02-23 18:16:30,012 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-23 13:16:44] 2025-02-23 18:16:30,024 | INFO     | did not find any defunct processes belonging to 276804
[2025-02-23 13:16:44] 2025-02-23 18:16:30,043 | INFO     | did not find any defunct processes belonging to 276804
[2025-02-23 13:16:44] 2025-02-23 18:16:30,043 | INFO     | ready for new job
[2025-02-23 13:16:44] 2025-02-23 18:16:30,043 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-23 13:16:44] 2025-02-23 18:16:30,049 | INFO     | **************************************
[2025-02-23 13:16:44] 2025-02-23 18:16:30,049 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-23 13:16:44] 2025-02-23 18:16:30,049 | INFO     | **************************************
[2025-02-23 13:16:44] 2025-02-23 18:16:30,050 | INFO     | 
[2025-02-23 13:16:44] 2025-02-23 18:16:30,066 | INFO     | architecture information:
[2025-02-23 13:16:44] 2025-02-23 18:16:30,071 | INFO     | executing command: cat /etc/os-release
[2025-02-23 13:16:44] 2025-02-23 18:16:30,105 | INFO     | cat /etc/os-release:
[2025-02-23 13:16:44] NAME="CentOS Linux"
[2025-02-23 13:16:44] VERSION="7 (Core)"
[2025-02-23 13:16:44] ID="centos"
[2025-02-23 13:16:44] ID_LIKE="rhel fedora"
[2025-02-23 13:16:44] VERSION_ID="7"
[2025-02-23 13:16:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-23 13:16:44] ANSI_COLOR="0;31"
[2025-02-23 13:16:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-23 13:16:44] HOME_URL="https://www.centos.org/"
[2025-02-23 13:16:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-23 13:16:44] 
[2025-02-23 13:16:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-23 13:16:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-23 13:16:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-23 13:16:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-23 13:16:44] 
[2025-02-23 13:16:44] 2025-02-23 18:16:30,106 | INFO     | **************************************
[2025-02-23 13:16:44] 2025-02-23 18:16:30,608 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-02-23 13:16:44] 2025-02-23 18:16:30,690 | INFO     | sufficient remaining disk space (74026319872 B)
[2025-02-23 13:16:44] 2025-02-23 18:16:30,690 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-23 13:16:44] 2025-02-23 18:16:30,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-23 13:16:44] 2025-02-23 18:16:30,691 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-23 13:16:44] 2025-02-23 18:16:30,734 | INFO     | all job control threads have been joined
[2025-02-23 13:16:44] 2025-02-23 18:16:31,135 | INFO     | all data control threads have been joined
[2025-02-23 13:16:44] 2025-02-23 18:16:31,146 | INFO     | all payload control threads have been joined
[2025-02-23 13:16:44] 2025-02-23 18:16:31,559 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-23 13:16:44] 2025-02-23 18:16:31,560 | INFO     | aborting loop
[2025-02-23 13:16:44] 2025-02-23 18:16:31,696 | INFO     | [job] retrieve thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:31,755 | INFO     | [job] control thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:31,965 | INFO     | [payload] execute_payloads thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:31,991 | INFO     | [job] create_data_payload thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:32,115 | INFO     | [payload] validate_pre thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:32,141 | INFO     | [data] control thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:32,154 | INFO     | [payload] control thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:32,356 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:32,518 | INFO     | PID=270360 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-02-23 13:16:44] 2025-02-23 18:16:32,518 | INFO     | .. there are 17 such processes running
[2025-02-23 13:16:44] 2025-02-23 18:16:32,518 | INFO     | found 0 job(s) in 20 queues
[2025-02-23 13:16:44] 2025-02-23 18:16:32,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-23 13:16:44] 2025-02-23 18:16:32,518 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-23 13:16:44] 2025-02-23 18:16:32,566 | INFO     | [job] job monitor thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:32,702 | INFO     | [data] copytool_out thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:32,821 | INFO     | [job] validate thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:32,956 | INFO     | [data] copytool_in thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:32,969 | INFO     | [payload] failed_post thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:32,975 | INFO     | [payload] validate_post thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:32,983 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-23 13:16:44] 2025-02-23 18:16:33,019 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-23 13:16:44] 2025-02-23 18:16:34,025 | INFO     | [job] queue monitor thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:36,992 | INFO     | [data] queue_monitor thread has finished
[2025-02-23 13:16:44] 2025-02-23 18:16:38,156 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140699455305536)>', '<ExcThread(monitor, started 140698691036928)>']
[2025-02-23 13:16:44] 2025-02-23 18:16:38,563 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-23 13:16:44] 2025-02-23 18:16:38,564 | INFO     | [monitor] control thread has ended
[2025-02-23 13:16:44] 2025-02-23 18:16:43,183 | INFO     | all workflow threads have been joined
[2025-02-23 13:16:44] 2025-02-23 18:16:43,184 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-23 13:16:44] 2025-02-23 18:16:43,184 | INFO     | traces error code: 0
[2025-02-23 13:16:44] 2025-02-23 18:16:43,184 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-23 13:16:44] 2025-02-23 18:16:43,621 [wrapper] ==== pilot stdout END ====
[2025-02-23 13:16:44] 2025-02-23 18:16:43,645 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-23 13:16:44] 2025-02-23 18:16:43,664 [wrapper] pilotpid: 270360
[2025-02-23 13:16:44] 2025-02-23 18:16:43,666 [wrapper] Pilot exit status: 0
[2025-02-23 13:16:44] 2025-02-23 18:16:43,762 [wrapper] pandaids: 6523977512
[2025-02-23 13:16:44] 2025-02-23 18:16:43,953 [wrapper] cleanup supervisor_pilot 1060687 270361
[2025-02-23 13:16:44] 2025-02-23 18:16:43,958 [wrapper] Test setup, not cleaning
[2025-02-23 13:16:44] 2025-02-23 18:16:43,963 [wrapper] apfmon messages muted
[2025-02-23 13:16:44] 2025-02-23 18:16:43,966 [wrapper] ==== wrapper stdout END ====
[2025-02-23 13:16:44] 2025-02-23 18:16:43,968 [wrapper] ==== wrapper stderr END ====
[2025-02-23 13:16:44]  *** Error codes and diagnostics ***
[2025-02-23 13:16:44]     "exeErrorCode": 0,
[2025-02-23 13:16:44]     "exeErrorDiag": "",
[2025-02-23 13:16:44]     "pilotErrorCode": 0,
[2025-02-23 13:16:44]     "pilotErrorDiag": "",
[2025-02-23 13:16:44]  *** Listing of results directory ***
[2025-02-23 13:16:44] total 660544
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas    491065 Feb 23 01:58 pilot3.tar.gz
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas      5118 Feb 23 02:20 queuedata.json
[2025-02-23 13:16:44] -rwx------. 1 boincer umatlas     35865 Feb 23 02:20 runpilot2-wrapper.sh
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas       100 Feb 23 09:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-23 13:16:44] -rwxr-xr-x. 1 boincer umatlas      7986 Feb 23 09:06 run_atlas
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas       105 Feb 23 09:06 job.xml
[2025-02-23 13:16:44] -rw-r--r--. 2 boincer umatlas 345404211 Feb 23 09:06 EVNT.43092757._001120.pool.root.1
[2025-02-23 13:16:44] -rw-r--r--. 2 boincer umatlas     17569 Feb 23 09:06 start_atlas.sh
[2025-02-23 13:16:44] drwxrwx--x. 2 boincer umatlas      4096 Feb 23 09:06 shared
[2025-02-23 13:16:44] -rw-r--r--. 2 boincer umatlas    503561 Feb 23 09:06 input.tar.gz
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas         0 Feb 23 09:06 boinc_lockfile
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas      2555 Feb 23 09:06 pandaJob.out
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas       467 Feb 23 09:06 setup.sh.local
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas    987736 Feb 23 09:06 agis_schedconf.cvmfs.json
[2025-02-23 13:16:44] drwx------. 4 boincer umatlas      4096 Feb 23 09:06 pilot3
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas      6841 Feb 23 13:10 init_data.xml
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas       532 Feb 23 13:14 boinc_task_state.xml
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas 323188349 Feb 23 13:14 HITS.43205075._059888.pool.root.1
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas      1043 Feb 23 13:15 memory_monitor_summary.json
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas   1582569 Feb 23 13:16 agis_ddmendpoints.agis.ALL.json
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas    450109 Feb 23 13:16 log.43205075._059888.job.log.tgz.1
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas        95 Feb 23 13:16 pilot_heartbeat.json
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas      7742 Feb 23 13:16 heartbeat.json
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas      4609 Feb 23 13:16 pilotlog.txt
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas      8192 Feb 23 13:16 boinc_mmap_file
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas        28 Feb 23 13:16 wrapper_checkpoint.txt
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas   1547944 Feb 23 13:16 log.43205075._059888.job.log.1
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas       357 Feb 23 13:16 output.list
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas       620 Feb 23 13:16 runtime_log
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas   2017280 Feb 23 13:16 result.tar.gz
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas     11424 Feb 23 13:16 runtime_log.err
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas       657 Feb 23 13:16 1tmNDmySL66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmxBvKDm54eULo.diag
[2025-02-23 13:16:44] -rw-r--r--. 1 boincer umatlas     21636 Feb 23 13:16 stderr.txt
[2025-02-23 13:16:44] HITS file was successfully produced:
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas 323188349 Feb 23 13:14 shared/HITS.pool.root.1
[2025-02-23 13:16:44]  *** Contents of shared directory: ***
[2025-02-23 13:16:44] total 655420
[2025-02-23 13:16:44] -rw-r--r--. 2 boincer umatlas 345404211 Feb 23 09:06 ATLAS.root_0
[2025-02-23 13:16:44] -rw-r--r--. 2 boincer umatlas     17569 Feb 23 09:06 start_atlas.sh
[2025-02-23 13:16:44] -rw-r--r--. 2 boincer umatlas    503561 Feb 23 09:06 input.tar.gz
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas 323188349 Feb 23 13:14 HITS.pool.root.1
[2025-02-23 13:16:44] -rw-------. 1 boincer umatlas   2017280 Feb 23 13:16 result.tar.gz
13:16:45 (266253): run_atlas exited; CPU time 83562.354020
13:16:45 (266253): called boinc_finish(0)

</stderr_txt>
]]>

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