Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-23 22:13:31 (18052): Detected: vboxwrapper 26206
2025-02-23 22:13:31 (18052): Detected: BOINC client v8.0.2
2025-02-23 22:13:32 (18052): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-23 22:13:32 (18052): Successfully copied 'init_data.xml' to the shared directory.
2025-02-23 22:13:33 (18052): Create VM. (boinc_f8358019db7e04c1, slot#4)
2025-02-23 22:13:33 (18052): Setting Memory Size for VM. (4200MB)
2025-02-23 22:13:34 (18052): Setting CPU Count for VM. (2)
2025-02-23 22:13:34 (18052): Setting Chipset Options for VM.
2025-02-23 22:13:34 (18052): Setting Graphics Controller Options for VM.
2025-02-23 22:13:34 (18052): Setting Boot Options for VM.
2025-02-23 22:13:35 (18052): Setting Network Configuration for NAT.
2025-02-23 22:13:35 (18052): Enabling VM Network Access.
2025-02-23 22:13:35 (18052): Disabling USB Support for VM.
2025-02-23 22:13:35 (18052): Disabling COM Port Support for VM.
2025-02-23 22:13:36 (18052): Disabling LPT Port Support for VM.
2025-02-23 22:13:36 (18052): Disabling Audio Support for VM.
2025-02-23 22:13:36 (18052): Disabling Clipboard Support for VM.
2025-02-23 22:13:36 (18052): Disabling Drag and Drop Support for VM.
2025-02-23 22:13:37 (18052): Adding storage controller(s) to VM.
2025-02-23 22:13:37 (18052): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-23 22:13:38 (18052): Adding VirtualBox Guest Additions to VM.
2025-02-23 22:13:38 (18052): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-23 22:13:39 (18052): forwarding host port 54586 to guest port 80
2025-02-23 22:13:39 (18052): Enabling remote desktop for VM.
2025-02-23 22:13:39 (18052): Required extension pack not installed, remote desktop not enabled.
2025-02-23 22:13:39 (18052): Enabling shared directory for VM.
2025-02-23 22:13:40 (18052): Starting VM using VBoxManage interface. (boinc_f8358019db7e04c1, slot#4)
2025-02-23 22:13:47 (18052): Successfully started VM. (PID = '7680')
2025-02-23 22:13:47 (18052): Reporting VM Process ID to BOINC.
2025-02-23 22:13:47 (18052): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-23 22:13:47 (18052): Guest Log: CPUID EDX: 0x178bfbff
2025-02-23 22:13:47 (18052): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-23 22:13:47 (18052): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-23 22:13:47 (18052): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-23 22:13:47 (18052): Detected: Web Application Enabled (http://localhost:54586)
2025-02-23 22:13:47 (18052): Preference change detected
2025-02-23 22:13:47 (18052): Setting CPU throttle for VM. (100%)
2025-02-23 22:13:47 (18052): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-23 22:13:49 (18052): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-23 22:13:49 (18052): Guest Log: BIOS: Booting from Hard Disk...
2025-02-23 22:13:52 (18052): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-23 22:13:52 (18052): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-23 22:13:52 (18052): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-23 22:13:57 (18052): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-23 22:13:57 (18052): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-23 22:14:03 (18052): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-23 22:14:03 (18052): Guest Log: 00:00:00.000126 main     Log opened 2025-02-23T22:14:01.688509000Z
2025-02-23 22:14:03 (18052): Guest Log: 00:00:00.000214 main     OS Product: Linux
2025-02-23 22:14:03 (18052): Guest Log: 00:00:00.000246 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-23 22:14:03 (18052): Guest Log: 00:00:00.000273 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-23 22:14:03 (18052): Guest Log: 00:00:00.000300 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-23 22:14:03 (18052): Guest Log: 00:00:00.000300 main     Process ID: 1264
2025-02-23 22:14:03 (18052): Guest Log: 00:00:00.000301 main     Package type: LINUX_64BITS_GENERIC
2025-02-23 22:14:03 (18052): Guest Log: 00:00:00.000937 main     5.2.32 r132073 started. Verbose level = 0
2025-02-23 22:14:03 (18052): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-23 22:14:03 (18052): Guest Log: [INFO] Mounting shared directory
2025-02-23 22:14:03 (18052): Guest Log: [INFO] Checking for init_data.xml
2025-02-23 22:14:11 (18052): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-23 22:14:11 (18052): Guest Log: [INFO] Detected branch: prod
2025-02-23 22:14:11 (18052): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-23 22:14:11 (18052): Guest Log: Copying input files
2025-02-23 22:14:12 (18052): Guest Log: Copied input files into RunAtlas.
2025-02-23 22:14:12 (18052): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-23 22:14:12 (18052): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-23 22:14:12 (18052): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-23 22:14:12 (18052): Guest Log: Further information can be found at the LHC@home message board.
2025-02-23 22:14:13 (18052): Guest Log: 00:00:10.005733 timesync vgsvcTimeSyncWorker: Radical guest time change: -39 589 351 821 000ns (GuestNow=1 740 309 252 342 139 000 ns GuestLast=1 740 348 841 693 960 000 ns fSetTimeLastLoop=true )
2025-02-23 22:14:26 (18052): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-23 22:14:26 (18052): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-23 22:14:26 (18052): Guest Log: 2.6.3.0 1559 0 30228 142974 4 1 3119916 4096000 0 65024 0 0 n/a 1169 290 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-23 22:14:28 (18052): Guest Log: copied the webapp to /var/www
2025-02-23 22:14:28 (18052): Guest Log: ATHENA_PROC_NUMBER=2
2025-02-23 22:14:28 (18052): Guest Log: ATHENA_CORE_NUMBER=2
2025-02-23 22:14:28 (18052): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-23 22:14:28 (18052): Guest Log:  *** Starting ATLAS job. (PandaID=6523439399 taskID=43078919) ***
2025-02-23 23:56:31 (18052): Status Report: Elapsed Time: '6000.679434'
2025-02-23 23:56:31 (18052): Status Report: CPU Time: '9448.937500'
2025-02-24 01:43:20 (18052): Status Report: Elapsed Time: '12001.395069'
2025-02-24 01:43:20 (18052): Status Report: CPU Time: '22125.984375'
2025-02-24 03:24:51 (18052): Status Report: Elapsed Time: '18002.021189'
2025-02-24 03:24:51 (18052): Status Report: CPU Time: '34175.921875'
2025-02-24 05:06:08 (18052): Status Report: Elapsed Time: '24002.245033'
2025-02-24 05:06:08 (18052): Status Report: CPU Time: '46219.156250'
2025-02-24 06:47:09 (18052): Status Report: Elapsed Time: '30003.203930'
2025-02-24 06:47:09 (18052): Status Report: CPU Time: '58237.921875'
2025-02-24 08:28:00 (18052): Status Report: Elapsed Time: '36003.560038'
2025-02-24 08:28:00 (18052): Status Report: CPU Time: '70242.578125'
2025-02-24 10:08:58 (18052): Status Report: Elapsed Time: '42003.689001'
2025-02-24 10:08:58 (18052): Status Report: CPU Time: '82268.968750'
2025-02-24 11:57:03 (18052): Status Report: Elapsed Time: '48004.145866'
2025-02-24 11:57:03 (18052): Status Report: CPU Time: '95127.656250'
2025-02-24 13:19:21 (18052): Guest Log:  *** Job finished ***
2025-02-24 13:19:21 (18052): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:11,693 | INFO     | [payload] failed_post thread has finished
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:12,190 | INFO     | [data] copytool_out thread has finished
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:13,511 | INFO     | [data] queue_monitor thread has finished
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:14,726 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139818060302144)>', '<ExcThread(monitor, started 139817308362496)>']
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:15,133 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:15,133 | INFO     | [monitor] control thread has ended
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:19,731 | INFO     | all workflow threads have been joined
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:19,732 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:19,732 | INFO     | traces error code: 0
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:19,732 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:19,834 [wrapper] ==== pilot stdout END ====
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:19,838 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:19,842 [wrapper] pilotpid: 5861
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:19,845 [wrapper] Pilot exit status: 0
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:20,362 [wrapper] pandaids: 6523439399
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:20,384 [wrapper] cleanup supervisor_pilot 11086 5862
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:20,387 [wrapper] Test setup, not cleaning
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:20,394 [wrapper] apfmon messages muted
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:20,398 [wrapper] ==== wrapper stdout END ====
2025-02-24 13:19:21 (18052): Guest Log: 2025-02-24 02:19:20,401 [wrapper] ==== wrapper stderr END ====
2025-02-24 13:19:21 (18052): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 13:19:21 (18052): Guest Log:     "exeErrorCode": 0,
2025-02-24 13:19:21 (18052): Guest Log:     "exeErrorDiag": "",
2025-02-24 13:19:21 (18052): Guest Log:     "pilotErrorCode": 0,
2025-02-24 13:19:21 (18052): Guest Log:     "pilotErrorDiag": "",
2025-02-24 13:19:21 (18052): Guest Log:  *** Listing of results directory ***
2025-02-24 13:19:21 (18052): Guest Log: total 337964
2025-02-24 13:19:21 (18052): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 22:14 pilot3.tar.gz
2025-02-24 13:19:21 (18052): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 22:21 runpilot2-wrapper.sh
2025-02-24 13:19:21 (18052): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 22:21 queuedata.json
2025-02-24 13:19:21 (18052): Guest Log: -rwxr-xr-x. 1 atlas atlas      9002 Feb 23 11:14 init_data.xml
2025-02-24 13:19:21 (18052): Guest Log: -rwxr-xr-x. 1 atlas atlas    503553 Feb 23 11:14 input.tar.gz
2025-02-24 13:19:21 (18052): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 23 11:14 start_atlas.sh
2025-02-24 13:19:21 (18052): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 23 11:14 EVNT.43078917._001242.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 13:19:21 (18052): Guest Log: -rw-r--r--. 1 atlas atlas      2545 Feb 23 11:14 pandaJob.out
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas       424 Feb 23 11:14 setup.sh.local
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas    987728 Feb 23 11:16 agis_schedconf.cvmfs.json
2025-02-24 13:19:21 (18052): Guest Log: drwx------. 4 atlas atlas      4096 Feb 23 11:16 pilot3
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas 325522380 Feb 24 02:17 HITS.43078919._089357.pool.root.1
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas      1034 Feb 24 02:18 memory_monitor_summary.json
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 02:18 agis_ddmendpoints.agis.ALL.json
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas    790148 Feb 24 02:18 log.43078919._089357.job.log.tgz.1
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas        95 Feb 24 02:18 pilot_heartbeat.json
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas      7706 Feb 24 02:19 heartbeat.json
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas      4398 Feb 24 02:19 pilotlog.txt
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas   7613510 Feb 24 02:19 log.43078919._089357.job.log.1
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 02:19 output.list
2025-02-24 13:19:21 (18052): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 02:19 runtime_log
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas   8427520 Feb 24 02:19 result.tar.gz
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas       669 Feb 24 02:19 rZwLDmp3C66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmXfuKDmMXm0km.diag
2025-02-24 13:19:21 (18052): Guest Log: -rw-r--r--. 1 atlas atlas     10966 Feb 24 02:19 runtime_log.err
2025-02-24 13:19:21 (18052): Guest Log: Looking for outputfile HITS.43078919._089357.pool.root.1
2025-02-24 13:19:21 (18052): Guest Log: HITS file was successfully produced
2025-02-24 13:19:21 (18052): Guest Log: -rw-------. 1 atlas atlas 325522380 Feb 24 02:17 /home/atlas/RunAtlas/HITS.43078919._089357.pool.root.1
2025-02-24 13:19:22 (18052): Guest Log: Successfully finished the ATLAS job!
2025-02-24 13:19:22 (18052): Guest Log: Copying the results back to the shared directory!
2025-02-24 13:19:22 (18052): Guest Log:  *** Contents of shared directory: ***
2025-02-24 13:19:22 (18052): Guest Log: total 662340
2025-02-24 13:19:22 (18052): Guest Log: -rwxrwxrwx. 1 root root 343741297 Feb 23 11:13 ATLAS.root_0
2025-02-24 13:19:22 (18052): Guest Log: -rwxrwxrwx. 1 root root 325522380 Feb 24 02:19 HITS.pool.root.1
2025-02-24 13:19:22 (18052): Guest Log: -rwxrwxrwx. 1 root root      9002 Feb 23 11:13 init_data.xml
2025-02-24 13:19:22 (18052): Guest Log: -rwxrwxrwx. 1 root root    503553 Feb 23 11:08 input.tar.gz
2025-02-24 13:19:22 (18052): Guest Log: -rwxrwxrwx. 1 root root   8427520 Feb 24  2025 result.tar.gz
2025-02-24 13:19:22 (18052): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 11:08 start_atlas.sh
2025-02-24 13:19:22 (18052): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 13:19:22 (18052): VM Completion File Detected.
2025-02-24 13:19:22 (18052): Powering off VM.
2025-02-24 13:19:23 (18052): Successfully stopped VM.
2025-02-24 13:19:23 (18052): Deregistering VM. (boinc_f8358019db7e04c1, slot#4)
2025-02-24 13:19:23 (18052): Removing network bandwidth throttle group from VM.
2025-02-24 13:19:24 (18052): Removing VM from VirtualBox.
13:19:29 (18052): called boinc_finish(0)

</stderr_txt>
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