Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-25 17:33:01 (19368): Detected: vboxwrapper 26206
2025-02-25 17:33:01 (19368): Detected: BOINC client v8.0.2
2025-02-25 17:33:01 (19368): Detected: VirtualBox VboxManage Interface (Version: 5.2.44)
2025-02-25 17:33:02 (19368): Successfully copied 'init_data.xml' to the shared directory.
2025-02-25 17:33:02 (19368): Create VM. (boinc_c32a88aabc2364f5, slot#0)
2025-02-25 17:33:03 (19368): Setting Memory Size for VM. (4800MB)
2025-02-25 17:33:03 (19368): Setting CPU Count for VM. (8)
2025-02-25 17:33:03 (19368): Setting Chipset Options for VM.
2025-02-25 17:33:03 (19368): Setting Graphics Controller Options for VM.
2025-02-25 17:33:04 (19368): Setting Boot Options for VM.
2025-02-25 17:33:04 (19368): Setting Network Configuration for NAT.
2025-02-25 17:33:04 (19368): Enabling VM Network Access.
2025-02-25 17:33:04 (19368): Disabling USB Support for VM.
2025-02-25 17:33:05 (19368): Disabling COM Port Support for VM.
2025-02-25 17:33:05 (19368): Disabling LPT Port Support for VM.
2025-02-25 17:33:05 (19368): Disabling Audio Support for VM.
2025-02-25 17:33:05 (19368): Disabling Clipboard Support for VM.
2025-02-25 17:33:06 (19368): Disabling Drag and Drop Support for VM.
2025-02-25 17:33:06 (19368): Adding storage controller(s) to VM.
2025-02-25 17:33:06 (19368): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-25 17:33:07 (19368): Adding VirtualBox Guest Additions to VM.
2025-02-25 17:33:07 (19368): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-25 17:33:07 (19368): forwarding host port 64160 to guest port 80
2025-02-25 17:33:07 (19368): Enabling remote desktop for VM.
2025-02-25 17:33:08 (19368): Enabling shared directory for VM.
2025-02-25 17:33:08 (19368): Starting VM using VBoxManage interface. (boinc_c32a88aabc2364f5, slot#0)
2025-02-25 17:33:13 (19368): Successfully started VM. (PID = '3692')
2025-02-25 17:33:13 (19368): Reporting VM Process ID to BOINC.
2025-02-25 17:33:13 (19368): Guest Log: BIOS: VirtualBox 5.2.44
2025-02-25 17:33:13 (19368): Guest Log: CPUID EDX: 0x178bfbff
2025-02-25 17:33:13 (19368): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-25 17:33:13 (19368): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-25 17:33:13 (19368): Detected: Web Application Enabled (http://localhost:64160)
2025-02-25 17:33:13 (19368): Detected: Remote Desktop Enabled (localhost:64162)
2025-02-25 17:33:13 (19368): Preference change detected
2025-02-25 17:33:13 (19368): Setting CPU throttle for VM. (100%)
2025-02-25 17:33:13 (19368): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-25 17:33:15 (19368): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-25 17:33:15 (19368): Guest Log: BIOS: Booting from Hard Disk...
2025-02-25 17:33:18 (19368): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-25 17:33:18 (19368): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-25 17:33:18 (19368): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-25 17:33:25 (19368): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-25 17:33:25 (19368): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-25 17:33:31 (19368): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-25 17:33:31 (19368): Guest Log: 00:00:00.000190 main     Log opened 2025-02-25T17:33:29.577745000Z
2025-02-25 17:33:31 (19368): Guest Log: 00:00:00.000332 main     OS Product: Linux
2025-02-25 17:33:31 (19368): Guest Log: 00:00:00.000378 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-25 17:33:31 (19368): Guest Log: 00:00:00.000411 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-25 17:33:31 (19368): Guest Log: 00:00:00.000442 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-25 17:33:31 (19368): Guest Log: 00:00:00.000443 main     Process ID: 1366
2025-02-25 17:33:31 (19368): Guest Log: 00:00:00.000444 main     Package type: LINUX_64BITS_GENERIC
2025-02-25 17:33:31 (19368): Guest Log: 00:00:00.001558 main     5.2.32 r132073 started. Verbose level = 0
2025-02-25 17:33:31 (19368): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-25 17:33:31 (19368): Guest Log: [INFO] Mounting shared directory
2025-02-25 17:33:31 (19368): Guest Log: [INFO] Checking for init_data.xml
2025-02-25 17:33:41 (19368): Guest Log: 00:00:10.004726 timesync vgsvcTimeSyncWorker: Radical guest time change: -10 788 424 334 000ns (GuestNow=1 740 494 021 156 395 000 ns GuestLast=1 740 504 809 580 729 000 ns fSetTimeLastLoop=true )
2025-02-25 17:33:46 (19368): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-25 17:33:46 (19368): Guest Log: [INFO] Detected branch: prod
2025-02-25 17:33:46 (19368): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-25 17:33:46 (19368): Guest Log: Copying input files
2025-02-25 17:33:49 (19368): Guest Log: Copied input files into RunAtlas.
2025-02-25 17:33:49 (19368): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-25 17:33:49 (19368): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-25 17:33:49 (19368): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-25 17:33:49 (19368): Guest Log: Further information can be found at the LHC@home message board.
2025-02-25 17:33:58 (19368): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-25 17:33:58 (19368): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-25 17:33:58 (19368): Guest Log: 2.6.3.0 1646 0 30020 143041 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-25 17:33:59 (19368): Guest Log: copied the webapp to /var/www
2025-02-25 17:33:59 (19368): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-25 17:33:59 (19368): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-25 17:34:01 (19368): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-25 17:34:01 (19368): Guest Log:  *** Starting ATLAS job. (PandaID=6523361143 taskID=43078919) ***
2025-02-25 19:13:19 (19368): Status Report: Elapsed Time: '6000.000000'
2025-02-25 19:13:19 (19368): Status Report: CPU Time: '29593.250000'
2025-02-25 20:53:26 (19368): Status Report: Elapsed Time: '12000.000000'
2025-02-25 20:53:26 (19368): Status Report: CPU Time: '75557.390625'
2025-02-25 20:53:29 (19368): Guest Log:  *** Job finished ***
2025-02-25 20:53:29 (19368): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:10,952 | INFO     | [data] queue_monitor thread has finished
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:17,920 | INFO     | job.realtimelogging is not enabled
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:18,922 | INFO     | [payload] run_realtimelog thread has finished
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:19,253 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139666041345856)>', '<ExcThread(monitor, started 139665155815168)>']
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:19,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:19,590 | INFO     | [monitor] control thread has ended
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:24,266 | INFO     | all workflow threads have been joined
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:24,266 | INFO     | end of generic workflow (traces error code: 0)
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:24,266 | INFO     | traces error code: 0
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:24,266 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:24,341 [wrapper] ==== pilot stdout END ====
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:24,348 [wrapper] ==== wrapper stdout RESUME ====
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:24,354 [wrapper] pilotpid: 6052
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:24,359 [wrapper] Pilot exit status: 0
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:26,389 [wrapper] pandaids: 6523361143
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:26,426 [wrapper] cleanup supervisor_pilot 12098 6053
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:26,432 [wrapper] Test setup, not cleaning
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:26,443 [wrapper] apfmon messages muted
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:26,449 [wrapper] ==== wrapper stdout END ====
2025-02-25 20:53:29 (19368): Guest Log: 2025-02-25 17:53:26,455 [wrapper] ==== wrapper stderr END ====
2025-02-25 20:53:29 (19368): Guest Log:  *** Error codes and diagnostics ***
2025-02-25 20:53:29 (19368): Guest Log:     "exeErrorCode": 0,
2025-02-25 20:53:29 (19368): Guest Log:     "exeErrorDiag": "",
2025-02-25 20:53:29 (19368): Guest Log:     "pilotErrorCode": 0,
2025-02-25 20:53:29 (19368): Guest Log:     "pilotErrorDiag": "",
2025-02-25 20:53:29 (19368): Guest Log:  *** Listing of results directory ***
2025-02-25 20:53:29 (19368): Guest Log: total 317844
2025-02-25 20:53:29 (19368): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 21:01 pilot3.tar.gz
2025-02-25 20:53:29 (19368): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 21:16 runpilot2-wrapper.sh
2025-02-25 20:53:29 (19368): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 21:16 queuedata.json
2025-02-25 20:53:29 (19368): Guest Log: -rwxr-xr-x. 1 atlas atlas      6316 Feb 25 14:33 init_data.xml
2025-02-25 20:53:29 (19368): Guest Log: -rwxr-xr-x. 1 atlas atlas    503558 Feb 25 14:33 input.tar.gz
2025-02-25 20:53:29 (19368): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 25 14:33 start_atlas.sh
2025-02-25 20:53:29 (19368): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 25 14:33 EVNT.43078917._002570.pool.root.1 -> /data/./ATLAS.root_0
2025-02-25 20:53:29 (19368): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Feb 25 14:34 pandaJob.out
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas       424 Feb 25 14:35 setup.sh.local
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas    988282 Feb 25 14:42 agis_schedconf.cvmfs.json
2025-02-25 20:53:29 (19368): Guest Log: drwx------. 4 atlas atlas      4096 Feb 25 14:42 pilot3
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas 319139651 Feb 25 17:52 HITS.43078919._089002.pool.root.1
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas      1046 Feb 25 17:52 memory_monitor_summary.json
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas   1577983 Feb 25 17:52 agis_ddmendpoints.agis.ALL.json
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas    356102 Feb 25 17:52 log.43078919._089002.job.log.tgz.1
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas        95 Feb 25 17:53 pilot_heartbeat.json
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas      7754 Feb 25 17:53 heartbeat.json
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas      4347 Feb 25 17:53 pilotlog.txt
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas    948252 Feb 25 17:53 log.43078919._089002.job.log.1
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas       357 Feb 25 17:53 output.list
2025-02-25 20:53:29 (19368): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 25 17:53 runtime_log
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas   1320960 Feb 25 17:53 result.tar.gz
2025-02-25 20:53:29 (19368): Guest Log: -rw-r--r--. 1 atlas atlas     10924 Feb 25 17:53 runtime_log.err
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas       652 Feb 25 17:53 6z7KDmY2B66n9Rq4apOajLDm4fhM0noT9bVoFjIUDm5VeKDmLPeYvm.diag
2025-02-25 20:53:29 (19368): Guest Log: Looking for outputfile HITS.43078919._089002.pool.root.1
2025-02-25 20:53:29 (19368): Guest Log: HITS file was successfully produced
2025-02-25 20:53:29 (19368): Guest Log: -rw-------. 1 atlas atlas 319139651 Feb 25 17:52 /home/atlas/RunAtlas/HITS.43078919._089002.pool.root.1
2025-02-25 20:53:31 (19368): Guest Log: Successfully finished the ATLAS job!
2025-02-25 20:53:31 (19368): Guest Log: Copying the results back to the shared directory!
2025-02-25 20:53:31 (19368): Guest Log:  *** Contents of shared directory: ***
2025-02-25 20:53:31 (19368): Guest Log: total 646180
2025-02-25 20:53:31 (19368): Guest Log: -rwxrwxrwx. 1 root root 340690221 Feb 25 14:33 ATLAS.root_0
2025-02-25 20:53:31 (19368): Guest Log: -rwxrwxrwx. 1 root root 319139651 Feb 25 17:53 HITS.pool.root.1
2025-02-25 20:53:31 (19368): Guest Log: -rwxrwxrwx. 1 root root      6316 Feb 25 14:33 init_data.xml
2025-02-25 20:53:31 (19368): Guest Log: -rwxrwxrwx. 1 root root    503558 Feb 23 10:24 input.tar.gz
2025-02-25 20:53:31 (19368): Guest Log: -rwxrwxrwx. 1 root root   1320960 Feb 25 17:53 result.tar.gz
2025-02-25 20:53:31 (19368): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 10:24 start_atlas.sh
2025-02-25 20:53:31 (19368): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-25 20:53:31 (19368): VM Completion File Detected.
2025-02-25 20:53:31 (19368): Powering off VM.
2025-02-25 20:53:31 (19368): Successfully stopped VM.
2025-02-25 20:53:31 (19368): Deregistering VM. (boinc_c32a88aabc2364f5, slot#0)
2025-02-25 20:53:31 (19368): Removing network bandwidth throttle group from VM.
2025-02-25 20:53:31 (19368): Removing VM from VirtualBox.
20:53:37 (19368): called boinc_finish(0)

</stderr_txt>
]]>

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