Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-23 13:55:43 (4964): Detected: vboxwrapper 26206
2025-02-23 13:55:43 (4964): Detected: BOINC client v7.16.20
2025-02-23 13:55:43 (4964): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-02-23 13:55:43 (4964): Successfully copied 'init_data.xml' to the shared directory.
2025-02-23 13:55:44 (4964): Create VM. (boinc_9e3d82477e5a5295, slot#0)
2025-02-23 13:55:44 (4964): Setting Memory Size for VM. (4800MB)
2025-02-23 13:55:45 (4964): Setting CPU Count for VM. (8)
2025-02-23 13:55:45 (4964): Setting Chipset Options for VM.
2025-02-23 13:55:45 (4964): Setting Graphics Controller Options for VM.
2025-02-23 13:55:45 (4964): Setting Boot Options for VM.
2025-02-23 13:55:46 (4964): Setting Network Configuration for NAT.
2025-02-23 13:55:46 (4964): Enabling VM Network Access.
2025-02-23 13:55:46 (4964): Disabling USB Support for VM.
2025-02-23 13:55:46 (4964): Disabling COM Port Support for VM.
2025-02-23 13:55:47 (4964): Disabling LPT Port Support for VM.
2025-02-23 13:55:47 (4964): Disabling Audio Support for VM.
2025-02-23 13:55:47 (4964): Disabling Clipboard Support for VM.
2025-02-23 13:55:47 (4964): Disabling Drag and Drop Support for VM.
2025-02-23 13:55:48 (4964): Adding storage controller(s) to VM.
2025-02-23 13:55:48 (4964): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-23 13:55:48 (4964): Adding VirtualBox Guest Additions to VM.
2025-02-23 13:55:49 (4964): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-23 13:55:49 (4964): forwarding host port 51877 to guest port 80
2025-02-23 13:55:49 (4964): Enabling remote desktop for VM.
2025-02-23 13:55:49 (4964): Required extension pack not installed, remote desktop not enabled.
2025-02-23 13:55:49 (4964): Enabling shared directory for VM.
2025-02-23 13:55:50 (4964): Starting VM using VBoxManage interface. (boinc_9e3d82477e5a5295, slot#0)
2025-02-23 13:55:54 (4964): Successfully started VM. (PID = '10160')
2025-02-23 13:55:54 (4964): Reporting VM Process ID to BOINC.
2025-02-23 13:55:54 (4964): Guest Log: BIOS: VirtualBox 6.1.50
2025-02-23 13:55:54 (4964): Guest Log: CPUID EDX: 0x178bfbff
2025-02-23 13:55:54 (4964): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-23 13:55:54 (4964): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-23 13:55:54 (4964): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-23 13:55:54 (4964): Detected: Web Application Enabled (http://localhost:51877)
2025-02-23 13:55:54 (4964): Preference change detected
2025-02-23 13:55:54 (4964): Setting CPU throttle for VM. (100%)
2025-02-23 13:55:55 (4964): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 80 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-23 13:55:57 (4964): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-23 13:55:57 (4964): Guest Log: BIOS: Booting from Hard Disk...
2025-02-23 13:55:59 (4964): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-23 13:55:59 (4964): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-23 13:55:59 (4964): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-23 13:56:05 (4964): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-23 13:56:05 (4964): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-23 13:56:10 (4964): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-23 13:56:10 (4964): Guest Log: 00:00:00.000132 main     Log opened 2025-02-23T13:56:08.706395000Z
2025-02-23 13:56:10 (4964): Guest Log: 00:00:00.000217 main     OS Product: Linux
2025-02-23 13:56:10 (4964): Guest Log: 00:00:00.000237 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-23 13:56:10 (4964): Guest Log: 00:00:00.000253 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-23 13:56:10 (4964): Guest Log: 00:00:00.000268 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-23 13:56:10 (4964): Guest Log: 00:00:00.000269 main     Process ID: 1367
2025-02-23 13:56:10 (4964): Guest Log: 00:00:00.000269 main     Package type: LINUX_64BITS_GENERIC
2025-02-23 13:56:10 (4964): Guest Log: 00:00:00.000785 main     5.2.32 r132073 started. Verbose level = 0
2025-02-23 13:56:10 (4964): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-23 13:56:10 (4964): Guest Log: [INFO] Mounting shared directory
2025-02-23 13:56:10 (4964): Guest Log: [INFO] Checking for init_data.xml
2025-02-23 13:56:12 (4964): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-23 13:56:12 (4964): Guest Log: [INFO] Detected branch: prod
2025-02-23 13:56:12 (4964): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-23 13:56:12 (4964): Guest Log: Copying input files
2025-02-23 13:56:13 (4964): Guest Log: Copied input files into RunAtlas.
2025-02-23 13:56:13 (4964): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-23 13:56:13 (4964): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-23 13:56:13 (4964): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-23 13:56:13 (4964): Guest Log: Further information can be found at the LHC@home message board.
2025-02-23 13:56:20 (4964): Guest Log: 00:00:10.004313 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 859 342 000ns (GuestNow=1 740 315 379 849 596 000 ns GuestLast=1 740 318 968 708 938 000 ns fSetTimeLastLoop=true )
2025-02-23 13:56:20 (4964): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-23 13:56:20 (4964): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-23 13:56:20 (4964): Guest Log: 2.6.3.0 1644 0 32220 142976 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-23 13:56:22 (4964): Guest Log: copied the webapp to /var/www
2025-02-23 13:56:22 (4964): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-23 13:56:22 (4964): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-23 13:56:22 (4964): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-23 13:56:22 (4964): Guest Log:  *** Starting ATLAS job. (PandaID=6523414685 taskID=43078919) ***
2025-02-23 15:36:06 (4964): Status Report: Elapsed Time: '6000.000000'
2025-02-23 15:36:06 (4964): Status Report: CPU Time: '41024.218750'
2025-02-23 16:27:32 (4964): Guest Log:  *** Job finished ***
2025-02-23 16:27:32 (4964): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:17,358 | INFO     | [job] validate thread has finished
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:18,066 | INFO     | [data] copytool_out thread has finished
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:21,006 | INFO     | [data] queue_monitor thread has finished
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:21,738 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139721577482048)>', '<ExcThread(monitor, started 139720185083648)>']
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:22,386 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:22,386 | INFO     | [monitor] control thread has ended
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,744 | INFO     | all workflow threads have been joined
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,744 | INFO     | end of generic workflow (traces error code: 0)
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,744 | INFO     | traces error code: 0
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,744 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,814 [wrapper] ==== pilot stdout END ====
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,817 [wrapper] ==== wrapper stdout RESUME ====
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,820 [wrapper] pilotpid: 5992
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,823 [wrapper] Pilot exit status: 0
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,894 [wrapper] pandaids: 6523414685
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,916 [wrapper] cleanup supervisor_pilot  8609 5993
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,921 [wrapper] Test setup, not cleaning
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,927 [wrapper] apfmon messages muted
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,931 [wrapper] ==== wrapper stdout END ====
2025-02-23 16:27:32 (4964): Guest Log: 2025-02-23 15:27:26,934 [wrapper] ==== wrapper stderr END ====
2025-02-23 16:27:32 (4964): Guest Log:  *** Error codes and diagnostics ***
2025-02-23 16:27:32 (4964): Guest Log:     "exeErrorCode": 0,
2025-02-23 16:27:32 (4964): Guest Log:     "exeErrorDiag": "",
2025-02-23 16:27:32 (4964): Guest Log:     "pilotErrorCode": 0,
2025-02-23 16:27:32 (4964): Guest Log:     "pilotErrorDiag": "",
2025-02-23 16:27:32 (4964): Guest Log:  *** Listing of results directory ***
2025-02-23 16:27:32 (4964): Guest Log: total 326236
2025-02-23 16:27:32 (4964): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 21:48 pilot3.tar.gz
2025-02-23 16:27:32 (4964): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 21:54 queuedata.json
2025-02-23 16:27:32 (4964): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 21:54 runpilot2-wrapper.sh
2025-02-23 16:27:32 (4964): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 23 12:56 start_atlas.sh
2025-02-23 16:27:32 (4964): Guest Log: -rwxr-xr-x. 1 atlas atlas    503557 Feb 23 12:56 input.tar.gz
2025-02-23 16:27:32 (4964): Guest Log: -rwxr-xr-x. 1 atlas atlas      8762 Feb 23 12:56 init_data.xml
2025-02-23 16:27:32 (4964): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 23 12:56 EVNT.43078917._002573.pool.root.1 -> /data/./ATLAS.root_0
2025-02-23 16:27:32 (4964): Guest Log: -rw-r--r--. 1 atlas atlas      2546 Feb 23 12:56 pandaJob.out
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas       424 Feb 23 12:56 setup.sh.local
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas    987736 Feb 23 12:56 agis_schedconf.cvmfs.json
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 23 12:56 agis_ddmendpoints.agis.ALL.json
2025-02-23 16:27:32 (4964): Guest Log: drwx------. 4 atlas atlas      4096 Feb 23 12:56 pilot3
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas 328156687 Feb 23 15:26 HITS.43078919._089213.pool.root.1
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas      1027 Feb 23 15:26 memory_monitor_summary.json
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas    343640 Feb 23 15:27 log.43078919._089213.job.log.tgz.1
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas      7710 Feb 23 15:27 heartbeat.json
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas        95 Feb 23 15:27 pilot_heartbeat.json
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas      4275 Feb 23 15:27 pilotlog.txt
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas    744238 Feb 23 15:27 log.43078919._089213.job.log.1
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas       357 Feb 23 15:27 output.list
2025-02-23 16:27:32 (4964): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 23 15:27 runtime_log
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas   1105920 Feb 23 15:27 result.tar.gz
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas       654 Feb 23 15:27 v0OODmYdC66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm2duKDmfEowom.diag
2025-02-23 16:27:32 (4964): Guest Log: -rw-r--r--. 1 atlas atlas     10935 Feb 23 15:27 runtime_log.err
2025-02-23 16:27:32 (4964): Guest Log: Looking for outputfile HITS.43078919._089213.pool.root.1
2025-02-23 16:27:32 (4964): Guest Log: HITS file was successfully produced
2025-02-23 16:27:32 (4964): Guest Log: -rw-------. 1 atlas atlas 328156687 Feb 23 15:26 /home/atlas/RunAtlas/HITS.43078919._089213.pool.root.1
2025-02-23 16:27:32 (4964): Guest Log: Successfully finished the ATLAS job!
2025-02-23 16:27:32 (4964): Guest Log: Copying the results back to the shared directory!
2025-02-23 16:27:32 (4964): Guest Log:  *** Contents of shared directory: ***
2025-02-23 16:27:32 (4964): Guest Log: total 656652
2025-02-23 16:27:32 (4964): Guest Log: -rwxrwxrwx. 1 root root 342607751 Feb 23 12:55 ATLAS.root_0
2025-02-23 16:27:32 (4964): Guest Log: -rwxrwxrwx. 1 root root 328156687 Feb 23  2025 HITS.pool.root.1
2025-02-23 16:27:32 (4964): Guest Log: -rwxrwxrwx. 1 root root      8762 Feb 23 12:55 init_data.xml
2025-02-23 16:27:32 (4964): Guest Log: -rwxrwxrwx. 1 root root    503557 Feb 23 10:24 input.tar.gz
2025-02-23 16:27:32 (4964): Guest Log: -rwxrwxrwx. 1 root root   1105920 Feb 23  2025 result.tar.gz
2025-02-23 16:27:32 (4964): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 10:24 start_atlas.sh
2025-02-23 16:27:32 (4964): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-23 16:27:32 (4964): VM Completion File Detected.
2025-02-23 16:27:32 (4964): Powering off VM.
2025-02-23 16:27:33 (4964): Successfully stopped VM.
2025-02-23 16:27:33 (4964): Deregistering VM. (boinc_9e3d82477e5a5295, slot#0)
2025-02-23 16:27:33 (4964): Removing network bandwidth throttle group from VM.
2025-02-23 16:27:33 (4964): Removing VM from VirtualBox.
16:27:38 (4964): called boinc_finish(0)

</stderr_txt>
]]>

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