Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-23 11:11:41 (41026): Detected: vboxwrapper 26206
2025-02-23 11:11:41 (41026): Detected: BOINC client v8.0.4
2025-02-23 11:11:41 (41026): Detected: VirtualBox VboxManage Interface (Version: 6.1.44)
2025-02-23 11:11:41 (41026): Detected: Sandbox Configuration Enabled
2025-02-23 11:11:41 (41026): Successfully copied 'init_data.xml' to the shared directory.
2025-02-23 11:11:41 (41026): Create VM. (boinc_b95f444ca2980996, slot#1)
2025-02-23 11:11:41 (41026): Setting Memory Size for VM. (4200MB)
2025-02-23 11:11:41 (41026): Setting CPU Count for VM. (2)
2025-02-23 11:11:41 (41026): Setting Chipset Options for VM.
2025-02-23 11:11:42 (41026): Setting Graphics Controller Options for VM.
2025-02-23 11:11:42 (41026): Setting Boot Options for VM.
2025-02-23 11:11:42 (41026): Setting Network Configuration for NAT.
2025-02-23 11:11:42 (41026): Enabling VM Network Access.
2025-02-23 11:11:42 (41026): Disabling USB Support for VM.
2025-02-23 11:11:42 (41026): Disabling COM Port Support for VM.
2025-02-23 11:11:42 (41026): Disabling Audio Support for VM.
2025-02-23 11:11:42 (41026): Disabling Clipboard Support for VM.
2025-02-23 11:11:42 (41026): Disabling Drag and Drop Support for VM.
2025-02-23 11:11:42 (41026): Adding storage controller(s) to VM.
2025-02-23 11:11:42 (41026): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-23 11:11:42 (41026): Adding VirtualBox Guest Additions to VM.
2025-02-23 11:11:42 (41026): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-23 11:11:42 (41026): forwarding host port 58268 to guest port 80
2025-02-23 11:11:42 (41026): Enabling remote desktop for VM.
2025-02-23 11:11:43 (41026): Required extension pack not installed, remote desktop not enabled.
2025-02-23 11:11:43 (41026): Enabling shared directory for VM.
2025-02-23 11:11:43 (41026): Starting VM using VBoxManage interface. (boinc_b95f444ca2980996, slot#1)
2025-02-23 11:11:44 (41026): Successfully started VM. (PID = '41093')
2025-02-23 11:11:44 (41026): Reporting VM Process ID to BOINC.
2025-02-23 11:11:44 (41026): Guest Log: BIOS: VirtualBox 6.1.44
2025-02-23 11:11:44 (41026): Guest Log: CPUID EDX: 0x178bfbff
2025-02-23 11:11:44 (41026): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-23 11:11:44 (41026): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-23 11:11:44 (41026): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-23 11:11:44 (41026): Detected: Web Application Enabled (http://localhost:58268)
2025-02-23 11:11:44 (41026): Preference change detected
2025-02-23 11:11:44 (41026): Setting CPU throttle for VM. (100%)
2025-02-23 11:11:44 (41026): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-23 11:11:46 (41026): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-23 11:11:46 (41026): Guest Log: BIOS: Booting from Hard Disk...
2025-02-23 11:12:08 (41026): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-23 11:12:08 (41026): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-23 11:12:08 (41026): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-23 11:12:18 (41026): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-23 11:12:18 (41026): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-23 11:12:33 (41026): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-23 11:12:33 (41026): Guest Log: 00:00:00.000259 main     Log opened 2025-02-23T10:12:31.051285000Z
2025-02-23 11:12:33 (41026): Guest Log: 00:00:00.000405 main     OS Product: Linux
2025-02-23 11:12:33 (41026): Guest Log: 00:00:00.000471 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-23 11:12:33 (41026): Guest Log: 00:00:00.000531 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-23 11:12:33 (41026): Guest Log: 00:00:00.000637 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-23 11:12:33 (41026): Guest Log: 00:00:00.000638 main     Process ID: 1230
2025-02-23 11:12:33 (41026): Guest Log: 00:00:00.000639 main     Package type: LINUX_64BITS_GENERIC
2025-02-23 11:12:33 (41026): Guest Log: 00:00:00.002364 main     5.2.32 r132073 started. Verbose level = 0
2025-02-23 11:12:33 (41026): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-23 11:12:33 (41026): Guest Log: [INFO] Mounting shared directory
2025-02-23 11:12:33 (41026): Guest Log: [INFO] Checking for init_data.xml
2025-02-23 11:12:37 (41026): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-23 11:12:37 (41026): Guest Log: [INFO] Detected branch: prod
2025-02-23 11:12:38 (41026): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-23 11:12:38 (41026): Guest Log: Copying input files
2025-02-23 11:12:40 (41026): Guest Log: Copied input files into RunAtlas.
2025-02-23 11:12:40 (41026): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-23 11:12:40 (41026): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-23 11:12:40 (41026): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-23 11:12:40 (41026): Guest Log: Further information can be found at the LHC@home message board.
2025-02-23 11:12:50 (41026): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-23 11:12:51 (41026): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-23 11:12:51 (41026): Guest Log: 2.6.3.0 1504 0 32172 142970 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-23 11:12:53 (41026): Guest Log: copied the webapp to /var/www
2025-02-23 11:12:53 (41026): Guest Log: ATHENA_PROC_NUMBER=2
2025-02-23 11:12:53 (41026): Guest Log: ATHENA_CORE_NUMBER=2
2025-02-23 11:12:54 (41026): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-23 11:12:54 (41026): Guest Log:  *** Starting ATLAS job. (PandaID=6523667531 taskID=43205094) ***
2025-02-23 11:15:42 (41026): Guest Log:  *** Job finished ***
2025-02-23 11:15:42 (41026): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:28,072 | INFO     | [job] validate thread has finished
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:28,377 | INFO     | [payload] validate_pre thread has finished
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:31,581 | INFO     | [data] queue_monitor thread has finished
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:32,579 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140671939667776)>', '<ExcThread(monitor, started 140671520339712)>']
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:33,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:33,474 | INFO     | [monitor] control thread has ended
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,586 | INFO     | all workflow threads have been joined
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,586 | INFO     | end of generic workflow (traces error code: 0)
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,587 | INFO     | traces error code: 0
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,587 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,684 [wrapper] ==== pilot stdout END ====
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,692 [wrapper] ==== wrapper stdout RESUME ====
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,699 [wrapper] pilotpid: 5803
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,706 [wrapper] Pilot exit status: 0
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,768 [wrapper] pandaids: 6523667531
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,813 [wrapper] cleanup supervisor_pilot  5809 5804
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,823 [wrapper] Test setup, not cleaning
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,839 [wrapper] apfmon messages muted
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,847 [wrapper] ==== wrapper stdout END ====
2025-02-23 11:15:42 (41026): Guest Log: 2025-02-23 10:15:37,854 [wrapper] ==== wrapper stderr END ====
2025-02-23 11:15:42 (41026): Guest Log:  *** Error codes and diagnostics ***
2025-02-23 11:15:42 (41026): Guest Log:     "exeErrorCode": 65,
2025-02-23 11:15:42 (41026): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-02-23 11:15:42 (41026): Guest Log:     "pilotErrorCode": 1305,
2025-02-23 11:15:42 (41026): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2025-02-23 10:15:04,294 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-02-23 11:15:42 (41026): Guest Log:  *** Listing of results directory ***
2025-02-23 11:15:42 (41026): Guest Log: total 3816
2025-02-23 11:15:42 (41026): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Feb 23 03:10 pilot3.tar.gz
2025-02-23 11:15:42 (41026): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Feb 23 03:34 queuedata.json
2025-02-23 11:15:42 (41026): Guest Log: -rwx------. 1 atlas atlas   35865 Feb 23 03:34 runpilot2-wrapper.sh
2025-02-23 11:15:42 (41026): Guest Log: -rw-r--r--. 1 atlas atlas    8298 Feb 23 10:12 init_data.xml
2025-02-23 11:15:42 (41026): Guest Log: -rw-r-----. 1 atlas atlas  503558 Feb 23 10:12 input.tar.gz
2025-02-23 11:15:42 (41026): Guest Log: -rw-r-----. 1 atlas atlas   17569 Feb 23 10:12 start_atlas.sh
2025-02-23 11:15:42 (41026): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 23 10:12 EVNT.43092757._001895.pool.root.1 -> /data/./ATLAS.root_0
2025-02-23 11:15:42 (41026): Guest Log: -rw-r--r--. 1 atlas atlas    2547 Feb 23 10:12 pandaJob.out
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas     424 Feb 23 10:12 setup.sh.local
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas  987736 Feb 23 10:13 agis_schedconf.cvmfs.json
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas 1582569 Feb 23 10:13 agis_ddmendpoints.agis.ALL.json
2025-02-23 11:15:42 (41026): Guest Log: drwx------. 4 atlas atlas    4096 Feb 23 10:13 pilot3
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas      95 Feb 23 10:14 pilot_heartbeat.json
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas     963 Feb 23 10:15 memory_monitor_summary.json
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas   20449 Feb 23 10:15 log.43205094._037830.job.log.tgz.1
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas    8420 Feb 23 10:15 heartbeat.json
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas    4275 Feb 23 10:15 pilotlog.txt
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas   66416 Feb 23 10:15 log.43205094._037830.job.log.1
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas     188 Feb 23 10:15 output.list
2025-02-23 11:15:42 (41026): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 23 10:15 runtime_log
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas  102400 Feb 23 10:15 result.tar.gz
2025-02-23 11:15:42 (41026): Guest Log: -rw-r--r--. 1 atlas atlas   10815 Feb 23 10:15 runtime_log.err
2025-02-23 11:15:42 (41026): Guest Log: -rw-------. 1 atlas atlas     651 Feb 23 10:15 b2OLDmewH66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmcyuKDmuI8CUm.diag
2025-02-23 11:15:42 (41026): Guest Log: Looking for outputfile HITS.43205094._037830.pool.root.1
2025-02-23 11:15:42 (41026): Guest Log: No HITS file was produced
2025-02-23 11:15:42 (41026): Guest Log: Successfully finished the ATLAS job!
2025-02-23 11:15:42 (41026): Guest Log: Copying the results back to the shared directory!
2025-02-23 11:15:42 (41026): Guest Log:  *** Contents of shared directory: ***
2025-02-23 11:15:42 (41026): Guest Log: total 334708
2025-02-23 11:15:42 (41026): Guest Log: -rw-rw----. 1 root root 342101845 Feb 23 10:11 ATLAS.root_0
2025-02-23 11:15:42 (41026): Guest Log: -rw-rw-r--. 1 root root      8298 Feb 23 10:11 init_data.xml
2025-02-23 11:15:42 (41026): Guest Log: -rw-rw----. 1 root root    503558 Feb 23 10:11 input.tar.gz
2025-02-23 11:15:42 (41026): Guest Log: -rw-r--r--. 1 root root    102400 Feb 23  2025 result.tar.gz
2025-02-23 11:15:42 (41026): Guest Log: -rw-rw----. 1 root root     17569 Feb 23 10:11 start_atlas.sh
2025-02-23 11:15:42 (41026): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-23 11:15:42 (41026): VM Completion File Detected.
2025-02-23 11:15:42 (41026): Powering off VM.
2025-02-23 11:15:42 (41026): Successfully stopped VM.
2025-02-23 11:15:42 (41026): Deregistering VM. (boinc_b95f444ca2980996, slot#1)
2025-02-23 11:15:43 (41026): Removing network bandwidth throttle group from VM.
2025-02-23 11:15:43 (41026): Removing VM from VirtualBox.
11:15:48 (41026): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN