Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 08:58:20 (10296): Detected: vboxwrapper 26206
2025-02-24 08:58:20 (10296): Detected: BOINC client v7.20.2
2025-02-24 08:58:20 (10296): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-24 08:58:21 (10296): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 08:58:21 (10296): Create VM. (boinc_4071042464d76074, slot#0)
2025-02-24 08:58:22 (10296): Setting Memory Size for VM. (5900MB)
2025-02-24 08:58:22 (10296): Setting CPU Count for VM. (3)
2025-02-24 08:58:22 (10296): Setting Chipset Options for VM.
2025-02-24 08:58:22 (10296): Setting Graphics Controller Options for VM.
2025-02-24 08:58:23 (10296): Setting Boot Options for VM.
2025-02-24 08:58:23 (10296): Setting Network Configuration for NAT.
2025-02-24 08:58:23 (10296): Enabling VM Network Access.
2025-02-24 08:58:23 (10296): Disabling USB Support for VM.
2025-02-24 08:58:24 (10296): Disabling COM Port Support for VM.
2025-02-24 08:58:24 (10296): Disabling LPT Port Support for VM.
2025-02-24 08:58:24 (10296): Disabling Audio Support for VM.
2025-02-24 08:58:24 (10296): Disabling Clipboard Support for VM.
2025-02-24 08:58:25 (10296): Disabling Drag and Drop Support for VM.
2025-02-24 08:58:25 (10296): Adding storage controller(s) to VM.
2025-02-24 08:58:25 (10296): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 08:58:26 (10296): Adding VirtualBox Guest Additions to VM.
2025-02-24 08:58:26 (10296): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 08:58:26 (10296): forwarding host port 49365 to guest port 80
2025-02-24 08:58:26 (10296): Enabling remote desktop for VM.
2025-02-24 08:58:27 (10296): Enabling shared directory for VM.
2025-02-24 08:58:28 (10296): Starting VM using VBoxManage interface. (boinc_4071042464d76074, slot#0)
2025-02-24 08:58:33 (10296): Successfully started VM. (PID = '10436')
2025-02-24 08:58:33 (10296): Reporting VM Process ID to BOINC.
2025-02-24 08:58:33 (10296): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-24 08:58:33 (10296): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 08:58:33 (10296): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 08:58:33 (10296): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 08:58:33 (10296): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 08:58:33 (10296): Detected: Web Application Enabled (http://localhost:49365)
2025-02-24 08:58:33 (10296): Detected: Remote Desktop Enabled (localhost:49366)
2025-02-24 08:58:33 (10296): Preference change detected
2025-02-24 08:58:33 (10296): Setting CPU throttle for VM. (100%)
2025-02-24 08:58:34 (10296): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 08:58:36 (10296): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 08:58:36 (10296): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 08:58:38 (10296): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 08:58:38 (10296): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 08:58:38 (10296): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 08:58:46 (10296): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 08:58:46 (10296): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 08:58:50 (10296): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 08:58:50 (10296): Guest Log: 00:00:00.000106 main     Log opened 2025-02-24T08:58:47.766009000Z
2025-02-24 08:58:50 (10296): Guest Log: 00:00:00.000187 main     OS Product: Linux
2025-02-24 08:58:50 (10296): Guest Log: 00:00:00.000210 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 08:58:50 (10296): Guest Log: 00:00:00.000228 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 08:58:50 (10296): Guest Log: 00:00:00.000246 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 08:58:50 (10296): Guest Log: 00:00:00.000246 main     Process ID: 1337
2025-02-24 08:58:50 (10296): Guest Log: 00:00:00.000246 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 08:58:50 (10296): Guest Log: 00:00:00.000918 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 08:58:50 (10296): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 08:58:50 (10296): Guest Log: [INFO] Mounting shared directory
2025-02-24 08:58:50 (10296): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 08:58:53 (10296): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 08:58:53 (10296): Guest Log: [INFO] Detected branch: prod
2025-02-24 08:58:53 (10296): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 08:58:53 (10296): Guest Log: Copying input files
2025-02-24 08:58:55 (10296): Guest Log: Copied input files into RunAtlas.
2025-02-24 08:58:55 (10296): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-02-24 08:59:00 (10296): Guest Log: 00:00:10.002889 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 108 637 000ns (GuestNow=1 740 383 939 659 559 000 ns GuestLast=1 740 387 527 768 196 000 ns fSetTimeLastLoop=true )
2025-02-24 08:59:02 (10296): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 08:59:03 (10296): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 08:59:03 (10296): Guest Log: 2.6.3.0 1611 0 31628 143003 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-02-24 08:59:03 (10296): Guest Log: copied the webapp to /var/www
2025-02-24 08:59:03 (10296): Guest Log: ATHENA_PROC_NUMBER=3
2025-02-24 08:59:03 (10296): Guest Log: ATHENA_CORE_NUMBER=3
2025-02-24 08:59:03 (10296): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 08:59:03 (10296): Guest Log:  *** Starting ATLAS job. (PandaID=6523359581 taskID=43205075) ***
2025-02-24 10:38:37 (10296): Status Report: Elapsed Time: '6000.000000'
2025-02-24 10:38:37 (10296): Status Report: CPU Time: '16291.937500'
2025-02-24 12:18:40 (10296): Status Report: Elapsed Time: '12000.000000'
2025-02-24 12:18:40 (10296): Status Report: CPU Time: '34206.421875'
2025-02-24 13:58:43 (10296): Status Report: Elapsed Time: '18000.000000'
2025-02-24 13:58:43 (10296): Status Report: CPU Time: '52121.343750'
2025-02-24 15:38:46 (10296): Status Report: Elapsed Time: '24000.000000'
2025-02-24 15:38:46 (10296): Status Report: CPU Time: '70037.515625'
2025-02-24 17:18:49 (10296): Status Report: Elapsed Time: '30000.000000'
2025-02-24 17:18:49 (10296): Status Report: CPU Time: '87951.796875'
2025-02-24 17:26:45 (10296): Guest Log:  *** Job finished ***
2025-02-24 17:26:45 (10296): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:23,241 | INFO     | [data] copytool_out thread has finished
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:23,516 | INFO     | [job] control thread has finished
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:25,869 | INFO     | [data] queue_monitor thread has finished
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:27,800 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140484028843840)>', '<ExcThread(monitor, started 140482977969920)>']
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:28,451 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:28,451 | INFO     | [monitor] control thread has ended
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:32,806 | INFO     | all workflow threads have been joined
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:32,806 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:32,807 | INFO     | traces error code: 0
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:32,807 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:32,911 [wrapper] ==== pilot stdout END ====
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:32,915 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:32,918 [wrapper] pilotpid: 5918
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:32,922 [wrapper] Pilot exit status: 0
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:32,991 [wrapper] pandaids: 6523359581
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:33,012 [wrapper] cleanup supervisor_pilot 11260 5919
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:33,016 [wrapper] Test setup, not cleaning
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:33,024 [wrapper] apfmon messages muted
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:33,028 [wrapper] ==== wrapper stdout END ====
2025-02-24 17:26:45 (10296): Guest Log: 2025-02-24 16:26:33,031 [wrapper] ==== wrapper stderr END ====
2025-02-24 17:26:45 (10296): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 17:26:45 (10296): Guest Log:     "exeErrorCode": 0,
2025-02-24 17:26:45 (10296): Guest Log:     "exeErrorDiag": "",
2025-02-24 17:26:45 (10296): Guest Log:     "pilotErrorCode": 0,
2025-02-24 17:26:45 (10296): Guest Log:     "pilotErrorDiag": "",
2025-02-24 17:26:45 (10296): Guest Log:  *** Listing of results directory ***
2025-02-24 17:26:45 (10296): Guest Log: total 332216
2025-02-24 17:26:45 (10296): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 20:02 pilot3.tar.gz
2025-02-24 17:26:45 (10296): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 20:12 queuedata.json
2025-02-24 17:26:45 (10296): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 20:14 runpilot2-wrapper.sh
2025-02-24 17:26:45 (10296): Guest Log: -rwxr-xr-x. 1 atlas atlas      8882 Feb 24 07:58 init_data.xml
2025-02-24 17:26:45 (10296): Guest Log: -rwxr-xr-x. 1 atlas atlas    503564 Feb 24 07:58 input.tar.gz
2025-02-24 17:26:45 (10296): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 07:58 start_atlas.sh
2025-02-24 17:26:45 (10296): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 07:58 EVNT.43092757._000671.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 17:26:45 (10296): Guest Log: -rw-r--r--. 1 atlas atlas      2554 Feb 24 07:59 pandaJob.out
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas       459 Feb 24 07:59 setup.sh.local
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas    987720 Feb 24 07:59 agis_schedconf.cvmfs.json
2025-02-24 17:26:45 (10296): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 07:59 pilot3
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas 327656316 Feb 24 16:25 HITS.43205075._059395.pool.root.1
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas      1029 Feb 24 16:26 memory_monitor_summary.json
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas        95 Feb 24 16:26 pilot_heartbeat.json
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 16:26 agis_ddmendpoints.agis.ALL.json
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas    523076 Feb 24 16:26 log.43205075._059395.job.log.tgz.1
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas      7733 Feb 24 16:26 heartbeat.json
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas      4591 Feb 24 16:26 pilotlog.txt
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas   3875726 Feb 24 16:26 log.43205075._059395.job.log.1
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 16:26 output.list
2025-02-24 17:26:45 (10296): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 16:26 runtime_log
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas   4413440 Feb 24 16:26 result.tar.gz
2025-02-24 17:26:45 (10296): Guest Log: -rw-r--r--. 1 atlas atlas     11299 Feb 24 16:26 runtime_log.err
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas       659 Feb 24 16:26 qK9LDmR4A66nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmyXuKDmMtffPm.diag
2025-02-24 17:26:45 (10296): Guest Log: Looking for outputfile HITS.43205075._059395.pool.root.1
2025-02-24 17:26:45 (10296): Guest Log: HITS file was successfully produced
2025-02-24 17:26:45 (10296): Guest Log: -rw-------. 1 atlas atlas 327656316 Feb 24 16:25 /home/atlas/RunAtlas/HITS.43205075._059395.pool.root.1
2025-02-24 17:26:47 (10296): Guest Log: Successfully finished the ATLAS job!
2025-02-24 17:26:47 (10296): Guest Log: Copying the results back to the shared directory!
2025-02-24 17:26:47 (10296): Guest Log:  *** Contents of shared directory: ***
2025-02-24 17:26:47 (10296): Guest Log: total 662756
2025-02-24 17:26:47 (10296): Guest Log: -rwxrwxrwx. 1 root root 346050488 Feb 24 07:58 ATLAS.root_0
2025-02-24 17:26:47 (10296): Guest Log: -rwxrwxrwx. 1 root root 327656316 Feb 24  2025 HITS.pool.root.1
2025-02-24 17:26:47 (10296): Guest Log: -rwxrwxrwx. 1 root root      8882 Feb 24 07:58 init_data.xml
2025-02-24 17:26:47 (10296): Guest Log: -rwxrwxrwx. 1 root root    503564 Feb 23 08:14 input.tar.gz
2025-02-24 17:26:47 (10296): Guest Log: -rwxrwxrwx. 1 root root   4413440 Feb 24  2025 result.tar.gz
2025-02-24 17:26:47 (10296): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 08:14 start_atlas.sh
2025-02-24 17:26:47 (10296): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 17:26:47 (10296): VM Completion File Detected.
2025-02-24 17:26:47 (10296): Powering off VM.
2025-02-24 17:26:49 (10296): Successfully stopped VM.
2025-02-24 17:26:49 (10296): Deregistering VM. (boinc_4071042464d76074, slot#0)
2025-02-24 17:26:49 (10296): Removing network bandwidth throttle group from VM.
2025-02-24 17:26:49 (10296): Removing VM from VirtualBox.
17:26:54 (10296): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN