Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 12:20:28 (3884): Detected: vboxwrapper 26206
2025-02-24 12:20:28 (3884): Detected: BOINC client v8.0.4
2025-02-24 12:20:29 (3884): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-02-24 12:20:29 (3884): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 12:20:30 (3884): Create VM. (boinc_da729d3f1e505882, slot#3)
2025-02-24 12:20:30 (3884): Setting Memory Size for VM. (4700MB)
2025-02-24 12:20:30 (3884): Setting CPU Count for VM. (7)
2025-02-24 12:20:31 (3884): Setting Chipset Options for VM.
2025-02-24 12:20:31 (3884): Setting Graphics Controller Options for VM.
2025-02-24 12:20:31 (3884): Setting Boot Options for VM.
2025-02-24 12:20:32 (3884): Setting Network Configuration for NAT.
2025-02-24 12:20:32 (3884): Enabling VM Network Access.
2025-02-24 12:20:32 (3884): Disabling USB Support for VM.
2025-02-24 12:20:32 (3884): Disabling COM Port Support for VM.
2025-02-24 12:20:33 (3884): Disabling LPT Port Support for VM.
2025-02-24 12:20:33 (3884): Disabling Audio Support for VM.
2025-02-24 12:20:33 (3884): Disabling Clipboard Support for VM.
2025-02-24 12:20:33 (3884): Disabling Drag and Drop Support for VM.
2025-02-24 12:20:34 (3884): Adding storage controller(s) to VM.
2025-02-24 12:20:34 (3884): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 12:20:34 (3884): Adding VirtualBox Guest Additions to VM.
2025-02-24 12:20:35 (3884): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 12:20:35 (3884): forwarding host port 4345 to guest port 80
2025-02-24 12:20:35 (3884): Enabling remote desktop for VM.
2025-02-24 12:20:35 (3884): Required extension pack not installed, remote desktop not enabled.
2025-02-24 12:20:35 (3884): Enabling shared directory for VM.
2025-02-24 12:20:36 (3884): Starting VM using VBoxManage interface. (boinc_da729d3f1e505882, slot#3)
2025-02-24 12:20:41 (3884): Successfully started VM. (PID = '14116')
2025-02-24 12:20:41 (3884): Reporting VM Process ID to BOINC.
2025-02-24 12:20:41 (3884): Guest Log: BIOS: VirtualBox 7.1.6
2025-02-24 12:20:41 (3884): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 12:20:41 (3884): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 12:20:41 (3884): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 12:20:41 (3884): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 12:20:41 (3884): Detected: Web Application Enabled (http://localhost:4345)
2025-02-24 12:20:41 (3884): Preference change detected
2025-02-24 12:20:41 (3884): Setting CPU throttle for VM. (100%)
2025-02-24 12:20:41 (3884): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 12:20:43 (3884): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 12:20:43 (3884): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 12:20:46 (3884): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 12:20:46 (3884): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 12:20:46 (3884): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 12:20:51 (3884): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 12:20:51 (3884): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 12:20:55 (3884): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 12:20:55 (3884): Guest Log: 00:00:00.000124 main     Log opened 2025-02-24T12:20:53.099582000Z
2025-02-24 12:20:55 (3884): Guest Log: 00:00:00.000202 main     OS Product: Linux
2025-02-24 12:20:55 (3884): Guest Log: 00:00:00.000222 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 12:20:55 (3884): Guest Log: 00:00:00.000237 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 12:20:55 (3884): Guest Log: 00:00:00.000251 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 12:20:55 (3884): Guest Log: 00:00:00.000251 main     Process ID: 1352
2025-02-24 12:20:55 (3884): Guest Log: 00:00:00.000252 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 12:20:55 (3884): Guest Log: 00:00:00.000806 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 12:20:57 (3884): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 12:20:57 (3884): Guest Log: [INFO] Mounting shared directory
2025-02-24 12:20:57 (3884): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 12:21:05 (3884): Guest Log: 00:00:10.010775 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 788 330 652 000ns (GuestNow=1 740 370 864 770 767 000 ns GuestLast=1 740 399 653 101 419 000 ns fSetTimeLastLoop=true )
2025-02-24 12:21:15 (3884): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 12:21:15 (3884): Guest Log: [INFO] Detected branch: prod
2025-02-24 12:21:16 (3884): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 12:21:16 (3884): Guest Log: Copying input files
2025-02-24 12:21:17 (3884): Guest Log: Copied input files into RunAtlas.
2025-02-24 12:21:17 (3884): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-24 12:21:17 (3884): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-24 12:21:17 (3884): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-24 12:21:17 (3884): Guest Log: Further information can be found at the LHC@home message board.
2025-02-24 12:21:29 (3884): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 12:21:29 (3884): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 12:21:29 (3884): Guest Log: 2.6.3.0 1656 0 32200 142999 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-24 12:21:30 (3884): Guest Log: copied the webapp to /var/www
2025-02-24 12:21:30 (3884): Guest Log: ATHENA_PROC_NUMBER=7
2025-02-24 12:21:30 (3884): Guest Log: ATHENA_CORE_NUMBER=7
2025-02-24 12:21:32 (3884): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 12:21:32 (3884): Guest Log:  *** Starting ATLAS job. (PandaID=6523359785 taskID=43078919) ***
2025-02-24 14:00:45 (3884): Status Report: Elapsed Time: '6000.000000'
2025-02-24 14:00:45 (3884): Status Report: CPU Time: '20151.156250'
2025-02-24 15:05:50 (3884): Guest Log:  *** Job finished ***
2025-02-24 15:05:50 (3884): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:37,405 | INFO     | [data] copytool_out thread has finished
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:37,601 | INFO     | [job] validate thread has finished
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:39,412 | INFO     | [data] queue_monitor thread has finished
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:40,126 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139821028079424)>', '<ExcThread(monitor, started 139819841746688)>']
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:40,535 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:40,535 | INFO     | [monitor] control thread has ended
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,141 | INFO     | all workflow threads have been joined
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,141 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,142 | INFO     | traces error code: 0
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,142 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,207 [wrapper] ==== pilot stdout END ====
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,211 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,214 [wrapper] pilotpid: 6030
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,218 [wrapper] Pilot exit status: 0
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,856 [wrapper] pandaids: 6523359785
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,878 [wrapper] cleanup supervisor_pilot  7238 6031
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,882 [wrapper] Test setup, not cleaning
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,892 [wrapper] apfmon messages muted
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,895 [wrapper] ==== wrapper stdout END ====
2025-02-24 15:05:50 (3884): Guest Log: 2025-02-24 07:05:45,899 [wrapper] ==== wrapper stderr END ====
2025-02-24 15:05:50 (3884): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 15:05:50 (3884): Guest Log:     "exeErrorCode": 0,
2025-02-24 15:05:50 (3884): Guest Log:     "exeErrorDiag": "",
2025-02-24 15:05:50 (3884): Guest Log:     "pilotErrorCode": 0,
2025-02-24 15:05:50 (3884): Guest Log:     "pilotErrorDiag": "",
2025-02-24 15:05:50 (3884): Guest Log:  *** Listing of results directory ***
2025-02-24 15:05:50 (3884): Guest Log: total 334128
2025-02-24 15:05:50 (3884): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 20:29 pilot3.tar.gz
2025-02-24 15:05:50 (3884): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 20:32 runpilot2-wrapper.sh
2025-02-24 15:05:50 (3884): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 20:33 queuedata.json
2025-02-24 15:05:50 (3884): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 24 04:21 start_atlas.sh
2025-02-24 15:05:50 (3884): Guest Log: -rwxr-xr-x. 1 atlas atlas    503561 Feb 24 04:21 input.tar.gz
2025-02-24 15:05:50 (3884): Guest Log: -rwxr-xr-x. 1 atlas atlas      9291 Feb 24 04:21 init_data.xml
2025-02-24 15:05:50 (3884): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 24 04:21 EVNT.43078917._001299.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 15:05:50 (3884): Guest Log: -rw-r--r--. 1 atlas atlas      2545 Feb 24 04:21 pandaJob.out
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas       424 Feb 24 04:21 setup.sh.local
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas    987712 Feb 24 04:26 agis_schedconf.cvmfs.json
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 24 04:27 agis_ddmendpoints.agis.ALL.json
2025-02-24 15:05:50 (3884): Guest Log: drwx------. 4 atlas atlas      4096 Feb 24 04:27 pilot3
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas 336075373 Feb 24 07:04 HITS.43078919._088749.pool.root.1
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas        95 Feb 24 07:05 pilot_heartbeat.json
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas      1007 Feb 24 07:05 memory_monitor_summary.json
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas    342442 Feb 24 07:05 log.43078919._088749.job.log.tgz.1
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas      7644 Feb 24 07:05 heartbeat.json
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas      4275 Feb 24 07:05 pilotlog.txt
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas    826708 Feb 24 07:05 log.43078919._088749.job.log.1
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas       357 Feb 24 07:05 output.list
2025-02-24 15:05:50 (3884): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 24 07:05 runtime_log
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas   1187840 Feb 24 07:05 result.tar.gz
2025-02-24 15:05:50 (3884): Guest Log: -rw-r--r--. 1 atlas atlas     10937 Feb 24 07:05 runtime_log.err
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas       658 Feb 24 07:05 rgAMDmPMB66n9Rq4apOajLDm4fhM0noT9bVoFjIUDmNUeKDmGqfNLm.diag
2025-02-24 15:05:50 (3884): Guest Log: Looking for outputfile HITS.43078919._088749.pool.root.1
2025-02-24 15:05:50 (3884): Guest Log: HITS file was successfully produced
2025-02-24 15:05:50 (3884): Guest Log: -rw-------. 1 atlas atlas 336075373 Feb 24 07:04 /home/atlas/RunAtlas/HITS.43078919._088749.pool.root.1
2025-02-24 15:05:51 (3884): Guest Log: Successfully finished the ATLAS job!
2025-02-24 15:05:51 (3884): Guest Log: Copying the results back to the shared directory!
2025-02-24 15:05:51 (3884): Guest Log:  *** Contents of shared directory: ***
2025-02-24 15:05:51 (3884): Guest Log: total 667252
2025-02-24 15:05:51 (3884): Guest Log: -rwxrwxrwx. 1 root root 345463649 Feb 24 04:20 ATLAS.root_0
2025-02-24 15:05:51 (3884): Guest Log: -rwxrwxrwx. 1 root root 336075373 Feb 24  2025 HITS.pool.root.1
2025-02-24 15:05:51 (3884): Guest Log: -rwxrwxrwx. 1 root root      9291 Feb 24 04:20 init_data.xml
2025-02-24 15:05:51 (3884): Guest Log: -rwxrwxrwx. 1 root root    503561 Feb 23 02:32 input.tar.gz
2025-02-24 15:05:51 (3884): Guest Log: -rwxrwxrwx. 1 root root   1187840 Feb 24  2025 result.tar.gz
2025-02-24 15:05:51 (3884): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 02:32 start_atlas.sh
2025-02-24 15:05:51 (3884): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 15:05:51 (3884): VM Completion File Detected.
2025-02-24 15:05:51 (3884): Powering off VM.
2025-02-24 15:05:51 (3884): Successfully stopped VM.
2025-02-24 15:05:51 (3884): Deregistering VM. (boinc_da729d3f1e505882, slot#3)
2025-02-24 15:05:51 (3884): Removing network bandwidth throttle group from VM.
2025-02-24 15:05:52 (3884): Removing VM from VirtualBox.
15:05:57 (3884): called boinc_finish(0)

</stderr_txt>
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