Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-24 13:25:27 (7660): Detected: vboxwrapper 26206
2025-02-24 13:25:27 (7660): Detected: BOINC client v8.0.4
2025-02-24 13:25:27 (7660): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-02-24 13:25:27 (7660): Successfully copied 'init_data.xml' to the shared directory.
2025-02-24 13:25:28 (7660): Create VM. (boinc_e3db72c5924b4c87, slot#0)
2025-02-24 13:25:28 (7660): Setting Memory Size for VM. (4700MB)
2025-02-24 13:25:29 (7660): Setting CPU Count for VM. (7)
2025-02-24 13:25:29 (7660): Setting Chipset Options for VM.
2025-02-24 13:25:29 (7660): Setting Graphics Controller Options for VM.
2025-02-24 13:25:30 (7660): Setting Boot Options for VM.
2025-02-24 13:25:30 (7660): Setting Network Configuration for NAT.
2025-02-24 13:25:30 (7660): Enabling VM Network Access.
2025-02-24 13:25:30 (7660): Disabling USB Support for VM.
2025-02-24 13:25:31 (7660): Disabling COM Port Support for VM.
2025-02-24 13:25:31 (7660): Disabling LPT Port Support for VM.
2025-02-24 13:25:31 (7660): Disabling Audio Support for VM.
2025-02-24 13:25:31 (7660): Disabling Clipboard Support for VM.
2025-02-24 13:25:32 (7660): Disabling Drag and Drop Support for VM.
2025-02-24 13:25:32 (7660): Adding storage controller(s) to VM.
2025-02-24 13:25:32 (7660): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-24 13:25:33 (7660): Adding VirtualBox Guest Additions to VM.
2025-02-24 13:25:33 (7660): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-24 13:25:33 (7660): forwarding host port 8492 to guest port 80
2025-02-24 13:25:33 (7660): Enabling remote desktop for VM.
2025-02-24 13:25:34 (7660): Required extension pack not installed, remote desktop not enabled.
2025-02-24 13:25:34 (7660): Enabling shared directory for VM.
2025-02-24 13:25:34 (7660): Starting VM using VBoxManage interface. (boinc_e3db72c5924b4c87, slot#0)
2025-02-24 13:25:40 (7660): Successfully started VM. (PID = '4432')
2025-02-24 13:25:40 (7660): Reporting VM Process ID to BOINC.
2025-02-24 13:25:40 (7660): Guest Log: BIOS: VirtualBox 7.1.6
2025-02-24 13:25:40 (7660): Guest Log: CPUID EDX: 0x178bfbff
2025-02-24 13:25:40 (7660): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-24 13:25:40 (7660): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-24 13:25:40 (7660): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-24 13:25:40 (7660): Detected: Web Application Enabled (http://localhost:8492)
2025-02-24 13:25:40 (7660): Preference change detected
2025-02-24 13:25:40 (7660): Setting CPU throttle for VM. (100%)
2025-02-24 13:25:40 (7660): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-24 13:25:42 (7660): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-24 13:25:42 (7660): Guest Log: BIOS: Booting from Hard Disk...
2025-02-24 13:25:45 (7660): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-24 13:25:45 (7660): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-24 13:25:45 (7660): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-24 13:25:51 (7660): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-24 13:25:51 (7660): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-24 13:25:55 (7660): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-24 13:25:55 (7660): Guest Log: 00:00:00.000177 main     Log opened 2025-02-24T13:25:53.494449000Z
2025-02-24 13:25:55 (7660): Guest Log: 00:00:00.000321 main     OS Product: Linux
2025-02-24 13:25:55 (7660): Guest Log: 00:00:00.000353 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-24 13:25:55 (7660): Guest Log: 00:00:00.000372 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-24 13:25:55 (7660): Guest Log: 00:00:00.000387 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-24 13:25:55 (7660): Guest Log: 00:00:00.000387 main     Process ID: 1359
2025-02-24 13:25:55 (7660): Guest Log: 00:00:00.000388 main     Package type: LINUX_64BITS_GENERIC
2025-02-24 13:25:55 (7660): Guest Log: 00:00:00.000867 main     5.2.32 r132073 started. Verbose level = 0
2025-02-24 13:25:55 (7660): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-24 13:25:55 (7660): Guest Log: [INFO] Mounting shared directory
2025-02-24 13:25:55 (7660): Guest Log: [INFO] Checking for init_data.xml
2025-02-24 13:26:05 (7660): Guest Log: 00:00:10.009932 timesync vgsvcTimeSyncWorker: Radical guest time change: -28 788 517 055 000ns (GuestNow=1 740 374 764 980 554 000 ns GuestLast=1 740 403 553 497 609 000 ns fSetTimeLastLoop=true )
2025-02-24 13:26:06 (7660): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-24 13:26:06 (7660): Guest Log: [INFO] Detected branch: prod
2025-02-24 13:26:07 (7660): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-24 13:26:07 (7660): Guest Log: Copying input files
2025-02-24 13:26:09 (7660): Guest Log: Copied input files into RunAtlas.
2025-02-24 13:26:09 (7660): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-24 13:26:09 (7660): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-24 13:26:09 (7660): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-24 13:26:09 (7660): Guest Log: Further information can be found at the LHC@home message board.
2025-02-24 13:26:21 (7660): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-24 13:26:23 (7660): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-24 13:26:23 (7660): Guest Log: 2.6.3.0 1657 0 32184 143000 3 1 3117296 4096000 0 65024 0 0 n/a 1 0 http://s1sampa-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-24 13:26:23 (7660): Guest Log: copied the webapp to /var/www
2025-02-24 13:26:23 (7660): Guest Log: ATHENA_PROC_NUMBER=7
2025-02-24 13:26:23 (7660): Guest Log: ATHENA_CORE_NUMBER=7
2025-02-24 13:26:25 (7660): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-24 13:26:25 (7660): Guest Log:  *** Starting ATLAS job. (PandaID=6523359784 taskID=43078919) ***
2025-02-24 14:09:47 (7660): Guest Log:  *** Job finished ***
2025-02-24 14:09:47 (7660): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:34,842 | INFO     | [payload] failed_post thread has finished
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:35,132 | INFO     | [job] control thread has finished
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:37,270 | INFO     | [data] queue_monitor thread has finished
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:38,030 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139763313538880)>', '<ExcThread(monitor, started 139762648209152)>']
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:38,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:38,156 | INFO     | [monitor] control thread has ended
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:43,046 | INFO     | all workflow threads have been joined
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:43,046 | INFO     | end of generic workflow (traces error code: 0)
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:43,047 | INFO     | traces error code: 0
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:43,047 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:43,146 [wrapper] ==== pilot stdout END ====
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:43,150 [wrapper] ==== wrapper stdout RESUME ====
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:43,154 [wrapper] pilotpid: 6033
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:43,158 [wrapper] Pilot exit status: 0
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:46,021 [wrapper] pandaids: 6523359784
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:46,048 [wrapper] cleanup supervisor_pilot 19480 6034
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:46,052 [wrapper] Test setup, not cleaning
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:46,061 [wrapper] apfmon messages muted
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:46,067 [wrapper] ==== wrapper stdout END ====
2025-02-24 14:09:47 (7660): Guest Log: 2025-02-24 06:09:46,071 [wrapper] ==== wrapper stderr END ====
2025-02-24 14:09:47 (7660): Guest Log:  *** Error codes and diagnostics ***
2025-02-24 14:09:47 (7660): Guest Log:     "exeErrorCode": 65,
2025-02-24 14:09:47 (7660): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
2025-02-24 14:09:47 (7660): Guest Log:     "pilotErrorCode": 1305,
2025-02-24 14:09:47 (7660): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2025-02-24 06:09:12,192 CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
2025-02-24 14:09:47 (7660): Guest Log:  *** Listing of results directory ***
2025-02-24 14:09:47 (7660): Guest Log: total 4292
2025-02-24 14:09:47 (7660): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Feb 22 20:29 pilot3.tar.gz
2025-02-24 14:09:47 (7660): Guest Log: -rwx------. 1 atlas atlas   35865 Feb 22 20:32 runpilot2-wrapper.sh
2025-02-24 14:09:47 (7660): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Feb 22 20:33 queuedata.json
2025-02-24 14:09:47 (7660): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Feb 24 05:26 start_atlas.sh
2025-02-24 14:09:47 (7660): Guest Log: -rwxr-xr-x. 1 atlas atlas  503562 Feb 24 05:26 input.tar.gz
2025-02-24 14:09:47 (7660): Guest Log: -rwxr-xr-x. 1 atlas atlas    9291 Feb 24 05:26 init_data.xml
2025-02-24 14:09:47 (7660): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 24 05:26 EVNT.43078917._001299.pool.root.1 -> /data/./ATLAS.root_0
2025-02-24 14:09:47 (7660): Guest Log: -rw-r--r--. 1 atlas atlas    2546 Feb 24 05:26 pandaJob.out
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas     424 Feb 24 05:27 setup.sh.local
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas 1582569 Feb 24 05:33 agis_ddmendpoints.agis.ALL.json
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas  987712 Feb 24 05:34 agis_schedconf.cvmfs.json
2025-02-24 14:09:47 (7660): Guest Log: drwx------. 4 atlas atlas    4096 Feb 24 05:34 pilot3
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas      95 Feb 24 06:08 pilot_heartbeat.json
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas     999 Feb 24 06:09 memory_monitor_summary.json
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas   90778 Feb 24 06:09 log.43078919._088748.job.log.tgz.1
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas   12963 Feb 24 06:09 heartbeat.json
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas    4275 Feb 24 06:09 pilotlog.txt
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas  230113 Feb 24 06:09 log.43078919._088748.job.log.1
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas     188 Feb 24 06:09 output.list
2025-02-24 14:09:47 (7660): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 24 06:09 runtime_log
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas  348160 Feb 24 06:09 result.tar.gz
2025-02-24 14:09:47 (7660): Guest Log: -rw-r--r--. 1 atlas atlas   10785 Feb 24 06:09 runtime_log.err
2025-02-24 14:09:47 (7660): Guest Log: -rw-------. 1 atlas atlas     648 Feb 24 06:09 Gs8LDmPMB66n9Rq4apOajLDm4fhM0noT9bVoFjIUDmMUeKDmT8jDen.diag
2025-02-24 14:09:47 (7660): Guest Log: Looking for outputfile HITS.43078919._088748.pool.root.1
2025-02-24 14:09:47 (7660): Guest Log: No HITS file was produced
2025-02-24 14:09:47 (7660): Guest Log: Successfully finished the ATLAS job!
2025-02-24 14:09:47 (7660): Guest Log: Copying the results back to the shared directory!
2025-02-24 14:09:47 (7660): Guest Log:  *** Contents of shared directory: ***
2025-02-24 14:09:47 (7660): Guest Log: total 338232
2025-02-24 14:09:47 (7660): Guest Log: -rwxrwxrwx. 1 root root 345463649 Feb 24 05:25 ATLAS.root_0
2025-02-24 14:09:47 (7660): Guest Log: -rwxrwxrwx. 1 root root      9291 Feb 24 05:25 init_data.xml
2025-02-24 14:09:47 (7660): Guest Log: -rwxrwxrwx. 1 root root    503562 Feb 23 02:58 input.tar.gz
2025-02-24 14:09:47 (7660): Guest Log: -rwxrwxrwx. 1 root root    348160 Feb 24  2025 result.tar.gz
2025-02-24 14:09:47 (7660): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 02:58 start_atlas.sh
2025-02-24 14:09:47 (7660): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-24 14:09:47 (7660): VM Completion File Detected.
2025-02-24 14:09:47 (7660): Powering off VM.
2025-02-24 14:09:48 (7660): Successfully stopped VM.
2025-02-24 14:09:48 (7660): Deregistering VM. (boinc_e3db72c5924b4c87, slot#0)
2025-02-24 14:09:48 (7660): Removing network bandwidth throttle group from VM.
2025-02-24 14:09:48 (7660): Removing VM from VirtualBox.
14:09:53 (7660): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN