Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-22 19:15:38 (4228): Detected: vboxwrapper 26206
2025-02-22 19:15:38 (4228): Detected: BOINC client v8.0.4
2025-02-22 19:15:38 (4228): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-22 19:15:38 (4228): Successfully copied 'init_data.xml' to the shared directory.
2025-02-22 19:15:39 (4228): Create VM. (boinc_2ba3c648655cd2a8, slot#2)
2025-02-22 19:15:39 (4228): Setting Memory Size for VM. (4400MB)
2025-02-22 19:15:40 (4228): Setting CPU Count for VM. (4)
2025-02-22 19:15:40 (4228): Setting Chipset Options for VM.
2025-02-22 19:15:40 (4228): Setting Graphics Controller Options for VM.
2025-02-22 19:15:41 (4228): Setting Boot Options for VM.
2025-02-22 19:15:41 (4228): Setting Network Configuration for NAT.
2025-02-22 19:15:41 (4228): Enabling VM Network Access.
2025-02-22 19:15:41 (4228): Disabling USB Support for VM.
2025-02-22 19:15:42 (4228): Disabling COM Port Support for VM.
2025-02-22 19:15:42 (4228): Disabling LPT Port Support for VM.
2025-02-22 19:15:42 (4228): Disabling Audio Support for VM.
2025-02-22 19:15:42 (4228): Disabling Clipboard Support for VM.
2025-02-22 19:15:43 (4228): Disabling Drag and Drop Support for VM.
2025-02-22 19:15:43 (4228): Adding storage controller(s) to VM.
2025-02-22 19:15:43 (4228): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-22 19:15:44 (4228): Adding VirtualBox Guest Additions to VM.
2025-02-22 19:15:44 (4228): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-22 19:15:44 (4228): forwarding host port 63967 to guest port 80
2025-02-22 19:15:44 (4228): Enabling remote desktop for VM.
2025-02-22 19:15:45 (4228): Required extension pack not installed, remote desktop not enabled.
2025-02-22 19:15:45 (4228): Enabling shared directory for VM.
2025-02-22 19:15:45 (4228): Starting VM using VBoxManage interface. (boinc_2ba3c648655cd2a8, slot#2)
2025-02-22 19:15:50 (4228): Successfully started VM. (PID = '7684')
2025-02-22 19:15:50 (4228): Reporting VM Process ID to BOINC.
2025-02-22 19:15:50 (4228): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-22 19:15:50 (4228): Guest Log: CPUID EDX: 0x178bfbff
2025-02-22 19:15:50 (4228): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-22 19:15:50 (4228): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-22 19:15:50 (4228): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-22 19:15:50 (4228): Detected: Web Application Enabled (http://localhost:63967)
2025-02-22 19:15:50 (4228): Preference change detected
2025-02-22 19:15:50 (4228): Setting CPU throttle for VM. (60%)
2025-02-22 19:15:50 (4228): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-22 19:15:52 (4228): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-22 19:15:52 (4228): Guest Log: BIOS: Booting from Hard Disk...
2025-02-22 19:15:56 (4228): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-22 19:15:56 (4228): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-22 19:15:56 (4228): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-22 19:16:07 (4228): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-22 19:16:07 (4228): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-22 19:16:22 (4228): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-22 19:16:22 (4228): Guest Log: 00:00:00.000191 main     Log opened 2025-02-22T19:16:19.800101000Z
2025-02-22 19:16:22 (4228): Guest Log: 00:00:00.000304 main     OS Product: Linux
2025-02-22 19:16:22 (4228): Guest Log: 00:00:00.000338 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-22 19:16:22 (4228): Guest Log: 00:00:00.000363 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-22 19:16:22 (4228): Guest Log: 00:00:00.000389 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-22 19:16:22 (4228): Guest Log: 00:00:00.000390 main     Process ID: 1299
2025-02-22 19:16:22 (4228): Guest Log: 00:00:00.000390 main     Package type: LINUX_64BITS_GENERIC
2025-02-22 19:16:22 (4228): Guest Log: 00:00:00.015476 main     5.2.32 r132073 started. Verbose level = 0
2025-02-22 19:16:22 (4228): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-22 19:16:22 (4228): Guest Log: [INFO] Mounting shared directory
2025-02-22 19:16:22 (4228): Guest Log: [INFO] Checking for init_data.xml
2025-02-22 19:16:27 (4228): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-22 19:16:27 (4228): Guest Log: [INFO] Detected branch: prod
2025-02-22 19:16:27 (4228): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-22 19:16:27 (4228): Guest Log: Copying input files
2025-02-22 19:16:29 (4228): Guest Log: Copied input files into RunAtlas.
2025-02-22 19:16:29 (4228): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-22 19:16:29 (4228): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-22 19:16:29 (4228): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-22 19:16:29 (4228): Guest Log: Further information can be found at the LHC@home message board.
2025-02-22 19:16:32 (4228): Guest Log: 00:00:10.053836 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 250 030 000ns (GuestNow=1 740 269 791 070 371 000 ns GuestLast=1 740 251 779 820 341 000 ns fSetTimeLastLoop=true )
2025-02-22 19:16:38 (4228): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-22 19:16:38 (4228): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-22 19:16:38 (4228): Guest Log: 2.6.3.0 1578 0 30144 142957 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-22 19:16:44 (4228): Guest Log: copied the webapp to /var/www
2025-02-22 19:16:44 (4228): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-22 19:16:44 (4228): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-22 19:16:44 (4228): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-22 19:16:44 (4228): Guest Log:  *** Starting ATLAS job. (PandaID=6523019812 taskID=43078919) ***
2025-02-22 20:57:22 (4228): Status Report: Elapsed Time: '6000.000000'
2025-02-22 20:57:22 (4228): Status Report: CPU Time: '10013.000000'
2025-02-22 22:39:55 (4228): Status Report: Elapsed Time: '12000.000000'
2025-02-22 22:39:55 (4228): Status Report: CPU Time: '22200.546875'
2025-02-23 00:22:27 (4228): Status Report: Elapsed Time: '18000.000000'
2025-02-23 00:22:27 (4228): Status Report: CPU Time: '34299.984375'
2025-02-23 02:05:01 (4228): Status Report: Elapsed Time: '24000.000000'
2025-02-23 02:05:01 (4228): Status Report: CPU Time: '46447.828125'
2025-02-23 03:46:24 (4228): Status Report: Elapsed Time: '30000.000000'
2025-02-23 03:46:24 (4228): Status Report: CPU Time: '59476.656250'
2025-02-23 05:28:56 (4228): Status Report: Elapsed Time: '36000.000000'
2025-02-23 05:28:56 (4228): Status Report: CPU Time: '71574.781250'
2025-02-23 05:32:12 (4228): Guest Log:  *** Job finished ***
2025-02-23 05:32:12 (4228): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:31:58,116 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:31:59,119 | INFO     | [job] queue monitor thread has finished
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:02,171 | INFO     | [data] queue_monitor thread has finished
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:04,179 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180525807424)>', '<ExcThread(monitor, started 140180233099008)>']
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:04,991 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:04,991 | INFO     | [monitor] control thread has ended
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,186 | INFO     | all workflow threads have been joined
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,186 | INFO     | end of generic workflow (traces error code: 0)
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,186 | INFO     | traces error code: 0
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,187 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,337 [wrapper] ==== pilot stdout END ====
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,376 [wrapper] ==== wrapper stdout RESUME ====
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,404 [wrapper] pilotpid: 5905
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,455 [wrapper] Pilot exit status: 0
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,626 [wrapper] pandaids: 6523019812
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,769 [wrapper] cleanup supervisor_pilot  7093 5906
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,773 [wrapper] Test setup, not cleaning
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,814 [wrapper] apfmon messages muted
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,856 [wrapper] ==== wrapper stdout END ====
2025-02-23 05:32:12 (4228): Guest Log: 2025-02-23 10:32:09,863 [wrapper] ==== wrapper stderr END ====
2025-02-23 05:32:12 (4228): Guest Log:  *** Error codes and diagnostics ***
2025-02-23 05:32:12 (4228): Guest Log:     "exeErrorCode": 0,
2025-02-23 05:32:12 (4228): Guest Log:     "exeErrorDiag": "",
2025-02-23 05:32:12 (4228): Guest Log:     "pilotErrorCode": 0,
2025-02-23 05:32:12 (4228): Guest Log:     "pilotErrorDiag": "",
2025-02-23 05:32:12 (4228): Guest Log:  *** Listing of results directory ***
2025-02-23 05:32:12 (4228): Guest Log: total 327532
2025-02-23 05:32:12 (4228): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 12:28 pilot3.tar.gz
2025-02-23 05:32:12 (4228): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 12:35 queuedata.json
2025-02-23 05:32:12 (4228): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 12:38 runpilot2-wrapper.sh
2025-02-23 05:32:12 (4228): Guest Log: -rwxr-xr-x. 1 atlas atlas     11034 Feb 23 00:16 init_data.xml
2025-02-23 05:32:12 (4228): Guest Log: -rwxr-xr-x. 1 atlas atlas    503567 Feb 23 00:16 input.tar.gz
2025-02-23 05:32:12 (4228): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 23 00:16 start_atlas.sh
2025-02-23 05:32:12 (4228): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 23 00:16 EVNT.43078917._000475.pool.root.1 -> /data/./ATLAS.root_0
2025-02-23 05:32:12 (4228): Guest Log: -rw-r--r--. 1 atlas atlas      2546 Feb 23 00:16 pandaJob.out
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas       424 Feb 23 00:16 setup.sh.local
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas    987744 Feb 23 00:17 agis_schedconf.cvmfs.json
2025-02-23 05:32:12 (4228): Guest Log: drwx------. 4 atlas atlas      4096 Feb 23 00:18 pilot3
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas 325240761 Feb 23 10:29 HITS.43078919._087500.pool.root.1
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas      1041 Feb 23 10:31 memory_monitor_summary.json
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 23 10:31 agis_ddmendpoints.agis.ALL.json
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas    468833 Feb 23 10:31 log.43078919._087500.job.log.tgz.1
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas        95 Feb 23 10:31 pilot_heartbeat.json
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas      7737 Feb 23 10:31 heartbeat.json
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas      4275 Feb 23 10:32 pilotlog.txt
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas   2734287 Feb 23 10:32 log.43078919._087500.job.log.1
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas       357 Feb 23 10:32 output.list
2025-02-23 05:32:12 (4228): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 23 10:32 runtime_log
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas   3225600 Feb 23 10:32 result.tar.gz
2025-02-23 05:32:12 (4228): Guest Log: -rw-r--r--. 1 atlas atlas     10906 Feb 23 10:32 runtime_log.err
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas       650 Feb 23 10:32 er9KDmWx356nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmX1tKDmjHeqem.diag
2025-02-23 05:32:12 (4228): Guest Log: Looking for outputfile HITS.43078919._087500.pool.root.1
2025-02-23 05:32:12 (4228): Guest Log: HITS file was successfully produced
2025-02-23 05:32:12 (4228): Guest Log: -rw-------. 1 atlas atlas 325240761 Feb 23 10:29 /home/atlas/RunAtlas/HITS.43078919._087500.pool.root.1
2025-02-23 05:32:14 (4228): Guest Log: Successfully finished the ATLAS job!
2025-02-23 05:32:14 (4228): Guest Log: Copying the results back to the shared directory!
2025-02-23 05:32:14 (4228): Guest Log:  *** Contents of shared directory: ***
2025-02-23 05:32:14 (4228): Guest Log: total 653664
2025-02-23 05:32:14 (4228): Guest Log: -rwxrwxrwx. 1 root root 340341510 Feb 23 00:15 ATLAS.root_0
2025-02-23 05:32:14 (4228): Guest Log: -rwxrwxrwx. 1 root root 325240761 Feb 23 10:32 HITS.pool.root.1
2025-02-23 05:32:14 (4228): Guest Log: -rwxrwxrwx. 1 root root     11034 Feb 23 00:15 init_data.xml
2025-02-23 05:32:14 (4228): Guest Log: -rwxrwxrwx. 1 root root    503567 Feb 23 00:15 input.tar.gz
2025-02-23 05:32:14 (4228): Guest Log: -rwxrwxrwx. 1 root root   3225600 Feb 23 10:32 result.tar.gz
2025-02-23 05:32:14 (4228): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 23 00:15 start_atlas.sh
2025-02-23 05:32:14 (4228): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-23 05:32:14 (4228): VM Completion File Detected.
2025-02-23 05:32:14 (4228): Powering off VM.
2025-02-23 05:32:15 (4228): Successfully stopped VM.
2025-02-23 05:32:15 (4228): Deregistering VM. (boinc_2ba3c648655cd2a8, slot#2)
2025-02-23 05:32:15 (4228): Removing network bandwidth throttle group from VM.
2025-02-23 05:32:15 (4228): Removing VM from VirtualBox.
05:32:21 (4228): called boinc_finish(0)

</stderr_txt>
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