Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-23 08:30:54 (99208): Detected: vboxwrapper 26206
2025-02-23 08:30:54 (99208): Detected: BOINC client v8.0.2
2025-02-23 08:30:55 (99208): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-02-23 08:30:55 (99208): Successfully copied 'init_data.xml' to the shared directory.
2025-02-23 08:30:56 (99208): Create VM. (boinc_10658b88b30be58e, slot#5)
2025-02-23 08:30:56 (99208): Setting Memory Size for VM. (4400MB)
2025-02-23 08:30:57 (99208): Setting CPU Count for VM. (4)
2025-02-23 08:30:57 (99208): Setting Chipset Options for VM.
2025-02-23 08:30:57 (99208): Setting Graphics Controller Options for VM.
2025-02-23 08:30:57 (99208): Setting Boot Options for VM.
2025-02-23 08:30:58 (99208): Setting Network Configuration for NAT.
2025-02-23 08:30:58 (99208): Enabling VM Network Access.
2025-02-23 08:30:58 (99208): Disabling USB Support for VM.
2025-02-23 08:30:58 (99208): Disabling COM Port Support for VM.
2025-02-23 08:30:59 (99208): Disabling LPT Port Support for VM.
2025-02-23 08:30:59 (99208): Disabling Audio Support for VM.
2025-02-23 08:30:59 (99208): Disabling Clipboard Support for VM.
2025-02-23 08:30:59 (99208): Disabling Drag and Drop Support for VM.
2025-02-23 08:31:00 (99208): Adding storage controller(s) to VM.
2025-02-23 08:31:00 (99208): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-23 08:31:00 (99208): Adding VirtualBox Guest Additions to VM.
2025-02-23 08:31:01 (99208): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-23 08:31:01 (99208): forwarding host port 52342 to guest port 80
2025-02-23 08:31:01 (99208): Enabling remote desktop for VM.
2025-02-23 08:31:01 (99208): Required extension pack not installed, remote desktop not enabled.
2025-02-23 08:31:01 (99208): Enabling shared directory for VM.
2025-02-23 08:31:02 (99208): Starting VM using VBoxManage interface. (boinc_10658b88b30be58e, slot#5)
2025-02-23 08:31:07 (99208): Successfully started VM. (PID = '100460')
2025-02-23 08:31:07 (99208): Reporting VM Process ID to BOINC.
2025-02-23 08:31:07 (99208): Guest Log: BIOS: VirtualBox 7.1.6
2025-02-23 08:31:07 (99208): Guest Log: CPUID EDX: 0x178bfbff
2025-02-23 08:31:07 (99208): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-23 08:31:07 (99208): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-23 08:31:07 (99208): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-23 08:31:07 (99208): Detected: Web Application Enabled (http://localhost:52342)
2025-02-23 08:31:07 (99208): Preference change detected
2025-02-23 08:31:07 (99208): Setting CPU throttle for VM. (100%)
2025-02-23 08:31:07 (99208): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-23 08:31:09 (99208): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-23 08:31:09 (99208): Guest Log: BIOS: Booting from Hard Disk...
2025-02-23 08:31:11 (99208): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-23 08:31:11 (99208): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-23 08:31:11 (99208): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-23 08:31:14 (99208): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-23 08:31:14 (99208): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-23 08:31:17 (99208): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-23 08:31:17 (99208): Guest Log: 00:00:00.000089 main     Log opened 2025-02-23T08:31:15.653342000Z
2025-02-23 08:31:17 (99208): Guest Log: 00:00:00.000160 main     OS Product: Linux
2025-02-23 08:31:17 (99208): Guest Log: 00:00:00.000174 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-23 08:31:17 (99208): Guest Log: 00:00:00.000184 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-23 08:31:17 (99208): Guest Log: 00:00:00.000194 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-23 08:31:17 (99208): Guest Log: 00:00:00.000195 main     Process ID: 1310
2025-02-23 08:31:17 (99208): Guest Log: 00:00:00.000195 main     Package type: LINUX_64BITS_GENERIC
2025-02-23 08:31:17 (99208): Guest Log: 00:00:00.000860 main     5.2.32 r132073 started. Verbose level = 0
2025-02-23 08:31:17 (99208): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-23 08:31:17 (99208): Guest Log: [INFO] Mounting shared directory
2025-02-23 08:31:17 (99208): Guest Log: [INFO] Checking for init_data.xml
2025-02-23 08:31:20 (99208): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-23 08:31:20 (99208): Guest Log: [INFO] Detected branch: prod
2025-02-23 08:31:20 (99208): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-23 08:31:20 (99208): Guest Log: Copying input files
2025-02-23 08:31:21 (99208): Guest Log: Copied input files into RunAtlas.
2025-02-23 08:31:21 (99208): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-23 08:31:21 (99208): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-23 08:31:21 (99208): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-23 08:31:21 (99208): Guest Log: Further information can be found at the LHC@home message board.
2025-02-23 08:31:27 (99208): Guest Log: 00:00:10.011777 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 611 174 000ns (GuestNow=1 740 292 287 044 407 000 ns GuestLast=1 740 299 475 655 581 000 ns fSetTimeLastLoop=true )
2025-02-23 08:31:28 (99208): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-23 08:31:28 (99208): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-23 08:31:28 (99208): Guest Log: 2.6.3.0 1584 0 30196 142966 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-23 08:31:28 (99208): Guest Log: copied the webapp to /var/www
2025-02-23 08:31:28 (99208): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-23 08:31:28 (99208): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-23 08:31:28 (99208): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-23 08:31:28 (99208): Guest Log:  *** Starting ATLAS job. (PandaID=6522582832 taskID=43205094) ***
2025-02-23 10:11:09 (99208): Status Report: Elapsed Time: '6000.000000'
2025-02-23 10:11:09 (99208): Status Report: CPU Time: '20588.062500'
2025-02-23 11:51:12 (99208): Status Report: Elapsed Time: '12000.000000'
2025-02-23 11:51:12 (99208): Status Report: CPU Time: '44210.781250'
2025-02-23 12:31:36 (99208): Guest Log:  *** Job finished ***
2025-02-23 12:31:36 (99208): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:45,640 | INFO     | [data] copytool_out thread has finished
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:45,887 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:50,039 | INFO     | [data] queue_monitor thread has finished
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:50,534 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140581762180928)>', '<ExcThread(monitor, started 140581007234816)>']
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:51,042 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:51,042 | INFO     | [monitor] control thread has ended
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,542 | INFO     | all workflow threads have been joined
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,542 | INFO     | end of generic workflow (traces error code: 0)
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,542 | INFO     | traces error code: 0
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,543 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,634 [wrapper] ==== pilot stdout END ====
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,638 [wrapper] ==== wrapper stdout RESUME ====
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,640 [wrapper] pilotpid: 5894
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,643 [wrapper] Pilot exit status: 0
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,707 [wrapper] pandaids: 6522582832
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,727 [wrapper] cleanup supervisor_pilot 16836 5895
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,730 [wrapper] Test setup, not cleaning
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,736 [wrapper] apfmon messages muted
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,740 [wrapper] ==== wrapper stdout END ====
2025-02-23 12:31:36 (99208): Guest Log: 2025-02-23 10:42:55,745 [wrapper] ==== wrapper stderr END ====
2025-02-23 12:31:36 (99208): Guest Log:  *** Error codes and diagnostics ***
2025-02-23 12:31:36 (99208): Guest Log:     "exeErrorCode": 0,
2025-02-23 12:31:36 (99208): Guest Log:     "exeErrorDiag": "",
2025-02-23 12:31:36 (99208): Guest Log:     "pilotErrorCode": 0,
2025-02-23 12:31:36 (99208): Guest Log:     "pilotErrorDiag": "",
2025-02-23 12:31:36 (99208): Guest Log:  *** Listing of results directory ***
2025-02-23 12:31:36 (99208): Guest Log: total 328160
2025-02-23 12:31:36 (99208): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 01:23 pilot3.tar.gz
2025-02-23 12:31:36 (99208): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 01:27 runpilot2-wrapper.sh
2025-02-23 12:31:36 (99208): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 01:27 queuedata.json
2025-02-23 12:31:36 (99208): Guest Log: -rwxr-xr-x. 1 atlas atlas     12027 Feb 23 06:31 init_data.xml
2025-02-23 12:31:36 (99208): Guest Log: -rwxr-xr-x. 1 atlas atlas    503553 Feb 23 06:31 input.tar.gz
2025-02-23 12:31:36 (99208): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 23 06:31 start_atlas.sh
2025-02-23 12:31:36 (99208): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 23 06:31 EVNT.43092757._002062.pool.root.1 -> /data/./ATLAS.root_0
2025-02-23 12:31:36 (99208): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Feb 23 06:31 pandaJob.out
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas       424 Feb 23 06:31 setup.sh.local
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas    987744 Feb 23 06:31 agis_schedconf.cvmfs.json
2025-02-23 12:31:36 (99208): Guest Log: drwx------. 4 atlas atlas      4096 Feb 23 06:31 pilot3
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas        95 Feb 23 10:42 pilot_heartbeat.json
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas 328906984 Feb 23 10:42 HITS.43205094._034514.pool.root.1
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas      1027 Feb 23 10:42 memory_monitor_summary.json
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 23 10:42 agis_ddmendpoints.agis.ALL.json
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas    326938 Feb 23 10:42 log.43205094._034514.job.log.tgz.1
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas      7676 Feb 23 10:42 heartbeat.json
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas      4461 Feb 23 10:42 pilotlog.txt
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas   1368413 Feb 23 10:42 log.43205094._034514.job.log.1
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas       357 Feb 23 10:42 output.list
2025-02-23 12:31:36 (99208): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 23 10:42 runtime_log
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas   1710080 Feb 23 10:42 result.tar.gz
2025-02-23 12:31:36 (99208): Guest Log: -rw-r--r--. 1 atlas atlas     10941 Feb 23 10:42 runtime_log.err
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas       661 Feb 23 10:42 0pqMDmEUt56nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmcHtKDmt7RwEm.diag
2025-02-23 12:31:36 (99208): Guest Log: Looking for outputfile HITS.43205094._034514.pool.root.1
2025-02-23 12:31:36 (99208): Guest Log: HITS file was successfully produced
2025-02-23 12:31:36 (99208): Guest Log: -rw-------. 1 atlas atlas 328906984 Feb 23 10:42 /home/atlas/RunAtlas/HITS.43205094._034514.pool.root.1
2025-02-23 12:31:36 (99208): Guest Log: Successfully finished the ATLAS job!
2025-02-23 12:31:36 (99208): Guest Log: Copying the results back to the shared directory!
2025-02-23 12:31:36 (99208): Guest Log:  *** Contents of shared directory: ***
2025-02-23 12:31:36 (99208): Guest Log: total 656408
2025-02-23 12:31:36 (99208): Guest Log: -rwxrwxrwx. 1 root root 341000934 Feb 23 06:30 ATLAS.root_0
2025-02-23 12:31:36 (99208): Guest Log: -rwxrwxrwx. 1 root root 328906984 Feb 23 10:31 HITS.pool.root.1
2025-02-23 12:31:36 (99208): Guest Log: -rwxrwxrwx. 1 root root     12027 Feb 23 06:30 init_data.xml
2025-02-23 12:31:36 (99208): Guest Log: -rwxrwxrwx. 1 root root    503553 Feb 22 22:39 input.tar.gz
2025-02-23 12:31:36 (99208): Guest Log: -rwxrwxrwx. 1 root root   1710080 Feb 23 10:31 result.tar.gz
2025-02-23 12:31:36 (99208): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 22 22:39 start_atlas.sh
2025-02-23 12:31:36 (99208): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-23 12:31:36 (99208): VM Completion File Detected.
2025-02-23 12:31:36 (99208): Powering off VM.
2025-02-23 12:31:36 (99208): Successfully stopped VM.
2025-02-23 12:31:36 (99208): Deregistering VM. (boinc_10658b88b30be58e, slot#5)
2025-02-23 12:31:36 (99208): Removing network bandwidth throttle group from VM.
2025-02-23 12:31:37 (99208): Removing VM from VirtualBox.
12:31:42 (99208): called boinc_finish(0)

</stderr_txt>
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