Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
22:56:46 (2985430): wrapper (7.7.26015): starting
22:56:46 (2985430): wrapper: running run_atlas (--nthreads 4)
[2025-02-24 22:56:46] Arguments: --nthreads 4
[2025-02-24 22:56:46] Threads: 4
[2025-02-24 22:56:46] Checking for CVMFS
[2025-02-24 22:56:46] No cvmfs_config command found, will try listing directly
[2025-02-24 22:56:46] CVMFS is ok
[2025-02-24 22:56:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-24 22:56:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-24 22:56:47] Further information can be found at the LHC@home message board.
[2025-02-24 22:56:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-24 22:56:47] Checking for apptainer binary...
[2025-02-24 22:56:47] which: no apptainer in ((null))
[2025-02-24 22:56:47] apptainer is not installed, using version from CVMFS
[2025-02-24 22:56:47] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-24 22:56:47] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-02-24 22:56:47] apptainer works
[2025-02-24 22:56:47] Set ATHENA_PROC_NUMBER=4
[2025-02-24 22:56:47] Set ATHENA_CORE_NUMBER=4
[2025-02-24 22:56:47] Starting ATLAS job with PandaID=6522812073
[2025-02-24 22:56:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
01:44:58 (3573548): wrapper (7.7.26015): starting
01:44:58 (3573548): wrapper: running run_atlas (--nthreads 4)
[2025-02-25 01:44:58] Arguments: --nthreads 4
[2025-02-25 01:44:58] Threads: 4
[2025-02-25 01:44:58] This job has been restarted, cleaning up previous attempt
[2025-02-25 01:44:58] Checking for CVMFS
[2025-02-25 01:44:58] No cvmfs_config command found, will try listing directly
[2025-02-25 01:44:58] CVMFS is ok
[2025-02-25 01:44:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-25 01:44:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-25 01:44:58] Further information can be found at the LHC@home message board.
[2025-02-25 01:44:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-25 01:44:58] Checking for apptainer binary...
[2025-02-25 01:44:58] which: no apptainer in ((null))
[2025-02-25 01:44:58] apptainer is not installed, using version from CVMFS
[2025-02-25 01:44:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-25 01:44:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot64/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-02-25 01:44:58] apptainer works
[2025-02-25 01:44:58] Set ATHENA_PROC_NUMBER=4
[2025-02-25 01:44:58] Set ATHENA_CORE_NUMBER=4
[2025-02-25 01:44:58] Starting ATLAS job with PandaID=6522812073
[2025-02-25 01:44:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot64/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-25 07:48:20]  *** The last 200 lines of the pilot log: ***
[2025-02-25 07:48:20] 2025-02-25 06:44:32,338 | INFO     | right removable region: 347
[2025-02-25 07:48:20] 2025-02-25 06:44:32,338 | INFO     | model: linear, x: [1740444650.0, 1740444711.0, 1740444772.0, 1740444833.0, 1740444894.0, 1740444955.0, 1740445016.0, 1740445077.0, 1740445138.0, 1740445199.0, 1740
[2025-02-25 07:48:20] 2025-02-25 06:44:32,339 | INFO     | sum of square deviations: 13068103627.0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,342 | INFO     | sum of deviations: 90598620171.50002
[2025-02-25 07:48:20] 2025-02-25 06:44:32,342 | INFO     | mean x: 1740455233.5
[2025-02-25 07:48:20] 2025-02-25 06:44:32,343 | INFO     | mean y: 2355645.3017241377
[2025-02-25 07:48:20] 2025-02-25 06:44:32,343 | INFO     | -- intersect: -12063881899.645308
[2025-02-25 07:48:20] 2025-02-25 06:44:32,343 | INFO     | intersect: -12063881899.645308
[2025-02-25 07:48:20] 2025-02-25 06:44:32,343 | INFO     | chi2: 1.5450191882310294
[2025-02-25 07:48:20] 2025-02-25 06:44:32,343 | INFO     | current chi2=1.5450191882310294 (change=61.829043834398334 %)
[2025-02-25 07:48:20] 2025-02-25 06:44:32,344 | INFO     | model: linear, x: [1740444955.0, 1740445016.0, 1740445077.0, 1740445138.0, 1740445199.0, 1740445260.0, 1740445321.0, 1740445382.0, 1740445443.0, 1740445504.0, 1740
[2025-02-25 07:48:20] 2025-02-25 06:44:32,344 | INFO     | sum of square deviations: 12512874612.0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,347 | INFO     | sum of deviations: 23557876822.000004
[2025-02-25 07:48:20] 2025-02-25 06:44:32,347 | INFO     | mean x: 1740455386.0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,347 | INFO     | mean y: 2374059.574344023
[2025-02-25 07:48:20] 2025-02-25 06:44:32,348 | INFO     | -- intersect: -3274365688.001612
[2025-02-25 07:48:20] 2025-02-25 06:44:32,348 | INFO     | intersect: -3274365688.001612
[2025-02-25 07:48:20] 2025-02-25 06:44:32,348 | INFO     | chi2: 0.10130374128760845
[2025-02-25 07:48:20] 2025-02-25 06:44:32,348 | INFO     | current chi2=0.10130374128760845 (change=93.4432049738103 %)
[2025-02-25 07:48:20] 2025-02-25 06:44:32,349 | INFO     | model: linear, x: [1740445260.0, 1740445321.0, 1740445382.0, 1740445443.0, 1740445504.0, 1740445565.0, 1740445626.0, 1740445687.0, 1740445748.0, 1740445809.0, 1740
[2025-02-25 07:48:20] 2025-02-25 06:44:32,349 | INFO     | sum of square deviations: 11973599384.5
[2025-02-25 07:48:20] 2025-02-25 06:44:32,352 | INFO     | sum of deviations: 9762147779.500002
[2025-02-25 07:48:20] 2025-02-25 06:44:32,352 | INFO     | mean x: 1740455538.5
[2025-02-25 07:48:20] 2025-02-25 06:44:32,353 | INFO     | mean y: 2377938.2041420117
[2025-02-25 07:48:20] 2025-02-25 06:44:32,353 | INFO     | -- intersect: -1416625957.3563538
[2025-02-25 07:48:20] 2025-02-25 06:44:32,353 | INFO     | intersect: -1416625957.3563538
[2025-02-25 07:48:20] 2025-02-25 06:44:32,353 | INFO     | chi2: 0.009676281536543421
[2025-02-25 07:48:20] 2025-02-25 06:44:32,353 | INFO     | current chi2=0.009676281536543421 (change=90.44824859027489 %)
[2025-02-25 07:48:20] 2025-02-25 06:44:32,354 | INFO     | model: linear, x: [1740445565.0, 1740445626.0, 1740445687.0, 1740445748.0, 1740445809.0, 1740445870.0, 1740445931.0, 1740445992.0, 1740446053.0, 1740446114.0, 1740
[2025-02-25 07:48:20] 2025-02-25 06:44:32,354 | INFO     | sum of square deviations: 11450045382.0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,357 | INFO     | sum of deviations: 9547549809.999998
[2025-02-25 07:48:20] 2025-02-25 06:44:32,357 | INFO     | mean x: 1740455691.0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,357 | INFO     | mean y: 2377998.051051051
[2025-02-25 07:48:20] 2025-02-25 06:44:32,357 | INFO     | -- intersect: -1448890258.7580698
[2025-02-25 07:48:20] 2025-02-25 06:44:32,358 | INFO     | intersect: -1448890258.7580698
[2025-02-25 07:48:20] 2025-02-25 06:44:32,358 | INFO     | chi2: 0.00923843866874197
[2025-02-25 07:48:20] 2025-02-25 06:44:32,358 | INFO     | current chi2=0.00923843866874197 (change=4.524908314706377 %)
[2025-02-25 07:48:20] 2025-02-25 06:44:32,358 | INFO     | left removable region: 40
[2025-02-25 07:48:20] 2025-02-25 06:44:32,359 | INFO     | model: linear, x: [1740446785.0, 1740446846.0, 1740446907.0, 1740446968.0, 1740447029.0, 1740447090.0, 1740447151.0, 1740447212.0, 1740447273.0, 1740447334.0, 1740
[2025-02-25 07:48:20] 2025-02-25 06:44:32,359 | INFO     | sum of square deviations: 8971993338.0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,361 | INFO     | sum of deviations: 11548550317.0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,362 | INFO     | mean x: 1740456118.0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,362 | INFO     | mean y: 2376967.5081433225
[2025-02-25 07:48:20] 2025-02-25 06:44:32,362 | INFO     | -- intersect: -2237899445.551927
[2025-02-25 07:48:20] 2025-02-25 06:44:32,362 | INFO     | intersect: -2237899445.551927
[2025-02-25 07:48:20] 2025-02-25 06:44:32,362 | INFO     | chi2: 0.0015500753667079413
[2025-02-25 07:48:20] 2025-02-25 06:44:32,362 | INFO     | -- intersect: -2237899445.551927
[2025-02-25 07:48:20] 2025-02-25 06:44:32,363 | INFO     | current memory leak: 1.29 B/s (using 307 data points, chi2=0.00)
[2025-02-25 07:48:20] 2025-02-25 06:44:32,364 | INFO     | ..............................
[2025-02-25 07:48:20] 2025-02-25 06:44:32,364 | INFO     | . Timing measurements:
[2025-02-25 07:48:20] 2025-02-25 06:44:32,364 | INFO     | . get job = 0 s
[2025-02-25 07:48:20] 2025-02-25 06:44:32,364 | INFO     | . initial setup = 1 s
[2025-02-25 07:48:20] 2025-02-25 06:44:32,364 | INFO     | . payload setup = 8 s
[2025-02-25 07:48:20] 2025-02-25 06:44:32,364 | INFO     | . stage-in = 0 s
[2025-02-25 07:48:20] 2025-02-25 06:44:32,364 | INFO     | . payload execution = 21520 s
[2025-02-25 07:48:20] 2025-02-25 06:44:32,364 | INFO     | . stage-out = 1 s
[2025-02-25 07:48:20] 2025-02-25 06:44:32,364 | INFO     | . log creation = 0 s
[2025-02-25 07:48:20] 2025-02-25 06:44:32,364 | INFO     | ..............................
[2025-02-25 07:48:20] 2025-02-25 06:44:32,469 | INFO     | 
[2025-02-25 07:48:20] 2025-02-25 06:44:32,470 | INFO     | job summary report
[2025-02-25 07:48:20] 2025-02-25 06:44:32,470 | INFO     | --------------------------------------------------
[2025-02-25 07:48:20] 2025-02-25 06:44:32,470 | INFO     | PanDA job id: 6522812073
[2025-02-25 07:48:20] 2025-02-25 06:44:32,470 | INFO     | task id: 43205075
[2025-02-25 07:48:20] 2025-02-25 06:44:32,470 | INFO     | errors: (none)
[2025-02-25 07:48:20] 2025-02-25 06:44:32,470 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-25 07:48:20] 2025-02-25 06:44:32,470 | INFO     | pilot state: finished 
[2025-02-25 07:48:20] 2025-02-25 06:44:32,470 | INFO     | transexitcode: 0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,470 | INFO     | exeerrorcode: 0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,470 | INFO     | exeerrordiag: 
[2025-02-25 07:48:20] 2025-02-25 06:44:32,471 | INFO     | exitcode: 0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,471 | INFO     | exitmsg: OK
[2025-02-25 07:48:20] 2025-02-25 06:44:32,471 | INFO     | cpuconsumptiontime: 82115 s
[2025-02-25 07:48:20] 2025-02-25 06:44:32,471 | INFO     | nevents: 400
[2025-02-25 07:48:20] 2025-02-25 06:44:32,471 | INFO     | neventsw: 0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,471 | INFO     | pid: 3600276
[2025-02-25 07:48:20] 2025-02-25 06:44:32,471 | INFO     | pgrp: 3600276
[2025-02-25 07:48:20] 2025-02-25 06:44:32,471 | INFO     | corecount: 4
[2025-02-25 07:48:20] 2025-02-25 06:44:32,471 | INFO     | event service: False
[2025-02-25 07:48:20] 2025-02-25 06:44:32,471 | INFO     | sizes: {0: 2383329, 1: 2383329, 7: 2383563, 11: 2383591, 21532: 2416857, 21533: 2416856, 21535: 2426059, 21543: 2426173}
[2025-02-25 07:48:20] 2025-02-25 06:44:32,471 | INFO     | --------------------------------------------------
[2025-02-25 07:48:20] 2025-02-25 06:44:32,473 | INFO     | 
[2025-02-25 07:48:20] 2025-02-25 06:44:32,473 | INFO     | executing command: ls -lF /scratch/boinc/var/slot64/slots/0
[2025-02-25 07:48:20] 2025-02-25 06:44:32,501 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,501 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,501 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,501 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,501 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,501 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,501 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,501 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,501 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,501 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,502 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,502 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,502 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,502 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,502 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,502 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,502 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,502 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-25 07:48:20] 2025-02-25 06:44:32,502 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,502 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-25 07:48:20] 2025-02-25 06:44:32,502 | INFO     | job 6522812073 has completed (purged errors)
[2025-02-25 07:48:20] 2025-02-25 06:44:32,503 | INFO     | overall cleanup function is called
[2025-02-25 07:48:20] 2025-02-25 06:44:32,686 | WARNING  | process 3600276 can no longer be monitored (due to stat problems) - aborting
[2025-02-25 07:48:20] 2025-02-25 06:44:33,186 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 07:48:20] 2025-02-25 06:44:33,187 | INFO     | using path: /scratch/boinc/var/slot64/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-02-25 07:48:20] 2025-02-25 06:44:33,188 | INFO     | skipping file size check of payload stdout file (/scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6522812073/payload.stdout) since it has not been created yet
[2025-02-25 07:48:20] 2025-02-25 06:44:33,188 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-02-25 07:48:20] 2025-02-25 06:44:33,210 | INFO     | sufficient remaining disk space (3220895170560 B)
[2025-02-25 07:48:20] 2025-02-25 06:44:33,210 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-02-25 07:48:20] 2025-02-25 06:44:33,210 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot64/slots/0/PanDA_Pilot-6522812073/HITS.43205075._058481.pool.root.1 since it does not exist
[2025-02-25 07:48:20] 2025-02-25 06:44:33,509 | INFO     | --- collectZombieJob: --- 10, [3600276]
[2025-02-25 07:48:20] 2025-02-25 06:44:33,510 | INFO     | zombie collector waiting for pid 3600276
[2025-02-25 07:48:20] 2025-02-25 06:44:33,510 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-25 07:48:20] 2025-02-25 06:44:33,510 | INFO     | collected zombie processes
[2025-02-25 07:48:20] 2025-02-25 06:44:33,510 | INFO     | will attempt to kill all subprocesses of pid=3600276
[2025-02-25 07:48:20] 2025-02-25 06:44:33,554 | INFO     | number of running child processes to parent process 3600276: 1
[2025-02-25 07:48:20] 2025-02-25 06:44:33,554 | INFO     | maximum number of monitored processes: 6
[2025-02-25 07:48:20] 2025-02-25 06:44:33,554 | INFO     | aborting job monitoring since job object (job id=6522812073) has expired
[2025-02-25 07:48:20] 2025-02-25 06:44:33,871 | INFO     | process IDs to be killed: [3600276] (in reverse order)
[2025-02-25 07:48:20] 2025-02-25 06:44:34,101 | WARNING  | found no corresponding commands to process id(s)
[2025-02-25 07:48:20] 2025-02-25 06:44:34,101 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-25 07:48:20] 2025-02-25 06:44:34,126 | INFO     | did not find any defunct processes belonging to 3600276
[2025-02-25 07:48:20] 2025-02-25 06:44:34,148 | INFO     | did not find any defunct processes belonging to 3600276
[2025-02-25 07:48:20] 2025-02-25 06:44:34,149 | INFO     | ready for new job
[2025-02-25 07:48:20] 2025-02-25 06:44:34,149 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-25 07:48:20] 2025-02-25 06:44:34,151 | INFO     | **************************************
[2025-02-25 07:48:20] 2025-02-25 06:44:34,152 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-25 07:48:20] 2025-02-25 06:44:34,152 | INFO     | **************************************
[2025-02-25 07:48:20] 2025-02-25 06:44:34,152 | INFO     | 
[2025-02-25 07:48:20] 2025-02-25 06:44:34,159 | INFO     | architecture information:
[2025-02-25 07:48:20] 2025-02-25 06:44:34,160 | INFO     | executing command: cat /etc/os-release
[2025-02-25 07:48:20] 2025-02-25 06:44:34,184 | INFO     | cat /etc/os-release:
[2025-02-25 07:48:20] NAME="CentOS Linux"
[2025-02-25 07:48:20] VERSION="7 (Core)"
[2025-02-25 07:48:20] ID="centos"
[2025-02-25 07:48:20] ID_LIKE="rhel fedora"
[2025-02-25 07:48:20] VERSION_ID="7"
[2025-02-25 07:48:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-25 07:48:20] ANSI_COLOR="0;31"
[2025-02-25 07:48:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-25 07:48:20] HOME_URL="https://www.centos.org/"
[2025-02-25 07:48:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-25 07:48:20] 
[2025-02-25 07:48:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-25 07:48:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-25 07:48:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-25 07:48:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-25 07:48:20] 
[2025-02-25 07:48:20] 2025-02-25 06:44:34,185 | INFO     | **************************************
[2025-02-25 07:48:20] 2025-02-25 06:44:34,686 | INFO     | executing command: df -mP /scratch/boinc/var/slot64/slots/0
[2025-02-25 07:48:20] 2025-02-25 06:44:34,710 | INFO     | sufficient remaining disk space (3220897267712 B)
[2025-02-25 07:48:20] 2025-02-25 06:44:34,711 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-25 07:48:20] 2025-02-25 06:44:34,711 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-25 07:48:20] 2025-02-25 06:44:34,711 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-25 07:48:20] 2025-02-25 06:44:34,712 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-25 07:48:20] 2025-02-25 06:44:34,712 | INFO     | aborting loop
[2025-02-25 07:48:20] 2025-02-25 06:44:34,713 | INFO     | found 0 job(s) in 20 queues
[2025-02-25 07:48:20] 2025-02-25 06:44:34,713 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-25 07:48:20] 2025-02-25 06:44:34,713 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-25 07:48:20] 2025-02-25 06:44:35,125 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-25 07:48:20] 2025-02-25 06:44:35,214 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-25 07:48:20] 2025-02-25 06:44:35,616 | INFO     | all payload control threads have been joined
[2025-02-25 07:48:20] 2025-02-25 06:44:35,709 | INFO     | all data control threads have been joined
[2025-02-25 07:48:20] 2025-02-25 06:44:35,715 | INFO     | [job] job monitor thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:35,716 | INFO     | [job] retrieve thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:35,766 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:35,989 | INFO     | [data] copytool_in thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:36,036 | INFO     | [payload] validate_post thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:36,153 | INFO     | all job control threads have been joined
[2025-02-25 07:48:20] 2025-02-25 06:44:36,305 | INFO     | [job] validate thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:36,349 | INFO     | [job] create_data_payload thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:36,472 | INFO     | [payload] execute_payloads thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:36,473 | INFO     | [payload] failed_post thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:36,620 | INFO     | [payload] control thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:36,715 | INFO     | [data] control thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:36,843 | INFO     | [payload] validate_pre thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:37,130 | INFO     | [data] copytool_out thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:37,158 | INFO     | [job] control thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:37,479 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-25 07:48:20] 2025-02-25 06:44:38,484 | INFO     | [job] queue monitor thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:39,221 | INFO     | [data] queue_monitor thread has finished
[2025-02-25 07:48:20] 2025-02-25 06:44:40,736 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22866038765376)>', '<ExcThread(monitor, started 22865810261760)>']
[2025-02-25 07:48:20] 2025-02-25 06:44:41,741 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-25 07:48:20] 2025-02-25 06:44:41,741 | INFO     | [monitor] control thread has ended
[2025-02-25 07:48:20] 2025-02-25 06:44:45,762 | INFO     | all workflow threads have been joined
[2025-02-25 07:48:20] 2025-02-25 06:44:45,763 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-25 07:48:20] 2025-02-25 06:44:45,763 | INFO     | traces error code: 0
[2025-02-25 07:48:20] 2025-02-25 06:44:45,763 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-25 07:48:20] 2025-02-25 06:44:45,987 [wrapper] ==== pilot stdout END ====
[2025-02-25 07:48:20] 2025-02-25 06:44:45,993 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-25 07:48:20] 2025-02-25 06:44:45,996 [wrapper] pilotpid: 3580865
[2025-02-25 07:48:20] 2025-02-25 06:44:45,999 [wrapper] Pilot exit status: 0
[2025-02-25 07:48:20] 2025-02-25 06:44:46,011 [wrapper] pandaids: 6522812073 6522812073
[2025-02-25 07:48:20] 2025-02-25 06:44:46,174 [wrapper] cleanup supervisor_pilot  483306 3580867
[2025-02-25 07:48:20] 2025-02-25 06:44:46,178 [wrapper] Test setup, not cleaning
[2025-02-25 07:48:20] 2025-02-25 06:44:46,186 [wrapper] apfmon messages muted
[2025-02-25 07:48:20] 2025-02-25 06:44:46,190 [wrapper] ==== wrapper stdout END ====
[2025-02-25 07:48:20] 2025-02-25 06:44:46,193 [wrapper] ==== wrapper stderr END ====
[2025-02-25 07:48:20]  *** Error codes and diagnostics ***
[2025-02-25 07:48:20]     "exeErrorCode": 0,
[2025-02-25 07:48:20]     "exeErrorDiag": "",
[2025-02-25 07:48:20]     "pilotErrorCode": 0,
[2025-02-25 07:48:20]     "pilotErrorDiag": "",
[2025-02-25 07:48:20]  *** Listing of results directory ***
[2025-02-25 07:48:20] total 1001224
[2025-02-25 07:48:20] drwx------ 4 boinc boinc      4096 Dec 18 12:03 pilot3
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc    491065 Feb 22 08:44 pilot3.tar.gz
[2025-02-25 07:48:20] -rwx------ 1 boinc boinc     35865 Feb 22 08:49 runpilot2-wrapper.sh
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc      5118 Feb 22 08:49 queuedata.json
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc       100 Feb 24 22:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-25 07:48:20] -rwxr-xr-x 1 boinc boinc      7986 Feb 24 22:56 run_atlas
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc       105 Feb 24 22:56 job.xml
[2025-02-25 07:48:20] -rw-r--r-- 3 boinc boinc 343061642 Feb 24 22:56 EVNT.43092757._001166.pool.root.1
[2025-02-25 07:48:20] -rw-r--r-- 3 boinc boinc 343061642 Feb 24 22:56 ATLAS.root_0
[2025-02-25 07:48:20] -rw-r--r-- 2 boinc boinc     17569 Feb 24 22:56 start_atlas.sh
[2025-02-25 07:48:20] drwxrwx--x 2 boinc boinc      4096 Feb 24 22:56 shared
[2025-02-25 07:48:20] -rw-r--r-- 2 boinc boinc    503555 Feb 24 22:56 input.tar.gz
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc         0 Feb 24 22:56 boinc_lockfile
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc      2555 Feb 25 01:44 pandaJob.out
[2025-02-25 07:48:20] -rw------- 1 boinc boinc       424 Feb 25 01:44 setup.sh.local
[2025-02-25 07:48:20] -rw------- 1 boinc boinc    988859 Feb 25 01:45 agis_schedconf.cvmfs.json
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc      6683 Feb 25 04:57 init_data.xml
[2025-02-25 07:48:20] -rw------- 1 boinc boinc 329837208 Feb 25 07:43 HITS.43205075._058481.pool.root.1
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc       532 Feb 25 07:43 boinc_task_state.xml
[2025-02-25 07:48:20] -rw------- 1 boinc boinc      1045 Feb 25 07:44 memory_monitor_summary.json
[2025-02-25 07:48:20] -rw------- 1 boinc boinc   1582569 Feb 25 07:44 agis_ddmendpoints.agis.ALL.json
[2025-02-25 07:48:20] -rw------- 1 boinc boinc    438905 Feb 25 07:44 log.43205075._058481.job.log.tgz.1
[2025-02-25 07:48:20] -rw------- 1 boinc boinc        97 Feb 25 07:44 pilot_heartbeat.json
[2025-02-25 07:48:20] -rw------- 1 boinc boinc      7704 Feb 25 07:44 heartbeat.json
[2025-02-25 07:48:20] -rw------- 1 boinc boinc      4349 Feb 25 07:44 pilotlog.txt
[2025-02-25 07:48:20] -rw------- 1 boinc boinc   2300489 Feb 25 07:44 log.43205075._058481.job.log.1
[2025-02-25 07:48:20] -rw------- 1 boinc boinc       357 Feb 25 07:44 output.list
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc       620 Feb 25 07:44 runtime_log
[2025-02-25 07:48:20] -rw------- 1 boinc boinc   2754560 Feb 25 07:44 result.tar.gz
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc     11501 Feb 25 07:44 runtime_log.err
[2025-02-25 07:48:20] -rw------- 1 boinc boinc       791 Feb 25 07:44 VPoNDmQRz56n9Rq4apOajLDm4fhM0noT9bVoFjIUDmW4dKDmZSpYIm.diag
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc        28 Feb 25 07:48 wrapper_checkpoint.txt
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc      8192 Feb 25 07:48 boinc_mmap_file
[2025-02-25 07:48:20] -rw-r--r-- 1 boinc boinc     23715 Feb 25 07:48 stderr.txt
[2025-02-25 07:48:20] HITS file was successfully produced:
[2025-02-25 07:48:20] -rw------- 1 boinc boinc 329837208 Feb 25 07:43 shared/HITS.pool.root.1
[2025-02-25 07:48:20]  *** Contents of shared directory: ***
[2025-02-25 07:48:20] total 660344
[2025-02-25 07:48:20] -rw-r--r-- 3 boinc boinc 343061642 Feb 24 22:56 ATLAS.root_0
[2025-02-25 07:48:20] -rw-r--r-- 2 boinc boinc     17569 Feb 24 22:56 start_atlas.sh
[2025-02-25 07:48:20] -rw-r--r-- 2 boinc boinc    503555 Feb 24 22:56 input.tar.gz
[2025-02-25 07:48:20] -rw------- 1 boinc boinc 329837208 Feb 25 07:43 HITS.pool.root.1
[2025-02-25 07:48:20] -rw------- 1 boinc boinc   2754560 Feb 25 07:44 result.tar.gz
07:48:21 (3573548): run_atlas exited; CPU time 81812.618732
07:48:21 (3573548): called boinc_finish(0)

</stderr_txt>
]]>

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