Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-22 15:21:05 (19864): Detected: vboxwrapper 26206
2025-02-22 15:21:05 (19864): Detected: BOINC client v8.0.2
2025-02-22 15:21:06 (19864): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2025-02-22 15:21:06 (19864): Successfully copied 'init_data.xml' to the shared directory.
2025-02-22 15:21:07 (19864): Create VM. (boinc_3fe6b08a3475d2e5, slot#1)
2025-02-22 15:21:07 (19864): Setting Memory Size for VM. (4800MB)
2025-02-22 15:21:07 (19864): Setting CPU Count for VM. (8)
2025-02-22 15:21:08 (19864): Setting Chipset Options for VM.
2025-02-22 15:21:08 (19864): Setting Graphics Controller Options for VM.
2025-02-22 15:21:08 (19864): Setting Boot Options for VM.
2025-02-22 15:21:09 (19864): Setting Network Configuration for NAT.
2025-02-22 15:21:09 (19864): Enabling VM Network Access.
2025-02-22 15:21:09 (19864): Disabling USB Support for VM.
2025-02-22 15:21:09 (19864): Disabling COM Port Support for VM.
2025-02-22 15:21:10 (19864): Disabling LPT Port Support for VM.
2025-02-22 15:21:10 (19864): Disabling Audio Support for VM.
2025-02-22 15:21:10 (19864): Disabling Clipboard Support for VM.
2025-02-22 15:21:11 (19864): Disabling Drag and Drop Support for VM.
2025-02-22 15:21:11 (19864): Adding storage controller(s) to VM.
2025-02-22 15:21:11 (19864): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-22 15:21:14 (19864): Adding VirtualBox Guest Additions to VM.
2025-02-22 15:21:14 (19864): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-22 15:21:15 (19864): forwarding host port 63426 to guest port 80
2025-02-22 15:21:15 (19864): Enabling remote desktop for VM.
2025-02-22 15:21:15 (19864): Enabling shared directory for VM.
2025-02-22 15:21:16 (19864): Starting VM using VBoxManage interface. (boinc_3fe6b08a3475d2e5, slot#1)
2025-02-22 15:21:23 (19864): Successfully started VM. (PID = '16764')
2025-02-22 15:21:23 (19864): Reporting VM Process ID to BOINC.
2025-02-22 15:21:23 (19864): Guest Log: BIOS: VirtualBox 7.0.14
2025-02-22 15:21:23 (19864): Guest Log: CPUID EDX: 0x178bfbff
2025-02-22 15:21:23 (19864): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-22 15:21:23 (19864): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-22 15:21:23 (19864): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-22 15:21:23 (19864): Detected: Web Application Enabled (http://localhost:63426)
2025-02-22 15:21:23 (19864): Detected: Remote Desktop Enabled (localhost:63427)
2025-02-22 15:21:23 (19864): Preference change detected
2025-02-22 15:21:23 (19864): Setting CPU throttle for VM. (90%)
2025-02-22 15:21:23 (19864): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-22 15:21:25 (19864): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-22 15:21:25 (19864): Guest Log: BIOS: Booting from Hard Disk...
2025-02-22 15:21:29 (19864): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-22 15:21:29 (19864): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-22 15:21:29 (19864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-22 15:21:40 (19864): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-22 15:21:40 (19864): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-22 15:21:59 (19864): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-22 15:21:59 (19864): Guest Log: 00:00:00.000205 main     Log opened 2025-02-22T15:21:57.968153000Z
2025-02-22 15:21:59 (19864): Guest Log: 00:00:00.000328 main     OS Product: Linux
2025-02-22 15:21:59 (19864): Guest Log: 00:00:00.000369 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-22 15:21:59 (19864): Guest Log: 00:00:00.000402 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-22 15:21:59 (19864): Guest Log: 00:00:00.000475 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-22 15:21:59 (19864): Guest Log: 00:00:00.000476 main     Process ID: 1371
2025-02-22 15:21:59 (19864): Guest Log: 00:00:00.000477 main     Package type: LINUX_64BITS_GENERIC
2025-02-22 15:21:59 (19864): Guest Log: 00:00:00.001183 main     5.2.32 r132073 started. Verbose level = 0
2025-02-22 15:21:59 (19864): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-22 15:21:59 (19864): Guest Log: [INFO] Mounting shared directory
2025-02-22 15:21:59 (19864): Guest Log: [INFO] Checking for init_data.xml
2025-02-22 15:22:03 (19864): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-22 15:22:03 (19864): Guest Log: [INFO] Detected branch: prod
2025-02-22 15:22:03 (19864): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-22 15:22:03 (19864): Guest Log: Copying input files
2025-02-22 15:22:05 (19864): Guest Log: Copied input files into RunAtlas.
2025-02-22 15:22:05 (19864): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-22 15:22:05 (19864): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-22 15:22:05 (19864): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-22 15:22:05 (19864): Guest Log: Further information can be found at the LHC@home message board.
2025-02-22 15:22:09 (19864): Guest Log: 00:00:10.007001 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 010 897 453 000ns (GuestNow=1 740 255 728 870 679 000 ns GuestLast=1 740 237 717 973 226 000 ns fSetTimeLastLoop=true )
2025-02-22 15:22:16 (19864): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-22 15:22:19 (19864): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-22 15:22:19 (19864): Guest Log: 2.6.3.0 1668 0 32016 142951 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-22 15:22:23 (19864): Guest Log: copied the webapp to /var/www
2025-02-22 15:22:23 (19864): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-22 15:22:23 (19864): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-22 15:22:23 (19864): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-22 15:22:23 (19864): Guest Log:  *** Starting ATLAS job. (PandaID=6522671569 taskID=43205094) ***
2025-02-22 17:01:28 (19864): Status Report: Elapsed Time: '6000.339060'
2025-02-22 17:01:28 (19864): Status Report: CPU Time: '34812.609375'
2025-02-22 18:41:30 (19864): Status Report: Elapsed Time: '12001.066343'
2025-02-22 18:41:30 (19864): Status Report: CPU Time: '77396.062500'
2025-02-22 19:05:51 (19864): Guest Log:  *** Job finished ***
2025-02-22 19:05:51 (19864): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:33,525 | INFO     | [payload] failed_post thread has finished
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:34,215 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:38,277 | INFO     | [data] queue_monitor thread has finished
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:40,393 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140421248759616)>', '<ExcThread(monitor, started 140420952594176)>']
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:41,394 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:41,394 | INFO     | [monitor] control thread has ended
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:45,398 | INFO     | all workflow threads have been joined
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:45,398 | INFO     | end of generic workflow (traces error code: 0)
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:45,398 | INFO     | traces error code: 0
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:45,398 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:49,056 [wrapper] ==== pilot stdout END ====
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:49,063 [wrapper] ==== wrapper stdout RESUME ====
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:49,070 [wrapper] pilotpid: 6010
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:49,076 [wrapper] Pilot exit status: 0
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:49,543 [wrapper] pandaids: 6522671569
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:49,568 [wrapper] cleanup supervisor_pilot 15358 6011
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:49,572 [wrapper] Test setup, not cleaning
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:49,581 [wrapper] apfmon messages muted
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:49,585 [wrapper] ==== wrapper stdout END ====
2025-02-22 19:05:51 (19864): Guest Log: 2025-02-23 00:05:49,589 [wrapper] ==== wrapper stderr END ====
2025-02-22 19:05:51 (19864): Guest Log:  *** Error codes and diagnostics ***
2025-02-22 19:05:51 (19864): Guest Log:     "exeErrorCode": 0,
2025-02-22 19:05:51 (19864): Guest Log:     "exeErrorDiag": "",
2025-02-22 19:05:51 (19864): Guest Log:     "pilotErrorCode": 0,
2025-02-22 19:05:51 (19864): Guest Log:     "pilotErrorDiag": "",
2025-02-22 19:05:51 (19864): Guest Log:  *** Listing of results directory ***
2025-02-22 19:05:51 (19864): Guest Log: total 327424
2025-02-22 19:05:51 (19864): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 22 04:22 queuedata.json
2025-02-22 19:05:51 (19864): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 22 04:22 pilot3.tar.gz
2025-02-22 19:05:51 (19864): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 22 04:23 runpilot2-wrapper.sh
2025-02-22 19:05:51 (19864): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 22 20:22 start_atlas.sh
2025-02-22 19:05:51 (19864): Guest Log: -rwxr-xr-x. 1 atlas atlas    503551 Feb 22 20:22 input.tar.gz
2025-02-22 19:05:51 (19864): Guest Log: -rwxr-xr-x. 1 atlas atlas      9246 Feb 22 20:22 init_data.xml
2025-02-22 19:05:51 (19864): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 22 20:22 EVNT.43092757._002094.pool.root.1 -> /data/./ATLAS.root_0
2025-02-22 19:05:51 (19864): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Feb 22 20:22 pandaJob.out
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas       424 Feb 22 20:22 setup.sh.local
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas    987744 Feb 22 20:22 agis_schedconf.cvmfs.json
2025-02-22 19:05:51 (19864): Guest Log: drwx------. 4 atlas atlas      4096 Feb 22 20:23 pilot3
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas 328531329 Feb 23 00:03 HITS.43205094._035420.pool.root.1
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas      1031 Feb 23 00:04 memory_monitor_summary.json
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 23 00:04 agis_ddmendpoints.agis.ALL.json
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas    386374 Feb 23 00:04 log.43205094._035420.job.log.tgz.1
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas        95 Feb 23 00:05 pilot_heartbeat.json
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas      7723 Feb 23 00:05 heartbeat.json
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas      4275 Feb 23 00:05 pilotlog.txt
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas   1122097 Feb 23 00:05 log.43205094._035420.job.log.1
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas       357 Feb 23 00:05 output.list
2025-02-22 19:05:51 (19864): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 23 00:05 runtime_log
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas   1525760 Feb 23 00:05 result.tar.gz
2025-02-22 19:05:51 (19864): Guest Log: -rw-r--r--. 1 atlas atlas     10972 Feb 23 00:05 runtime_log.err
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas       668 Feb 23 00:05 EvfLDmNEw56nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmzRtKDm3kP69m.diag
2025-02-22 19:05:51 (19864): Guest Log: Looking for outputfile HITS.43205094._035420.pool.root.1
2025-02-22 19:05:51 (19864): Guest Log: HITS file was successfully produced
2025-02-22 19:05:51 (19864): Guest Log: -rw-------. 1 atlas atlas 328531329 Feb 23 00:03 /home/atlas/RunAtlas/HITS.43205094._035420.pool.root.1
2025-02-22 19:05:53 (19864): Guest Log: Successfully finished the ATLAS job!
2025-02-22 19:05:53 (19864): Guest Log: Copying the results back to the shared directory!
2025-02-22 19:05:53 (19864): Guest Log:  *** Contents of shared directory: ***
2025-02-22 19:05:53 (19864): Guest Log: total 656756
2025-02-22 19:05:53 (19864): Guest Log: -rwxrwxrwx. 1 root root 341918703 Feb 22 20:21 ATLAS.root_0
2025-02-22 19:05:53 (19864): Guest Log: -rwxrwxrwx. 1 root root 328531329 Feb 23 00:05 HITS.pool.root.1
2025-02-22 19:05:53 (19864): Guest Log: -rwxrwxrwx. 1 root root      9246 Feb 22 20:21 init_data.xml
2025-02-22 19:05:53 (19864): Guest Log: -rwxrwxrwx. 1 root root    503551 Feb 22 09:04 input.tar.gz
2025-02-22 19:05:53 (19864): Guest Log: -rwxrwxrwx. 1 root root   1525760 Feb 23  2025 result.tar.gz
2025-02-22 19:05:53 (19864): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 22 09:04 start_atlas.sh
2025-02-22 19:05:53 (19864): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-22 19:05:53 (19864): VM Completion File Detected.
2025-02-22 19:05:53 (19864): Powering off VM.
2025-02-22 19:05:56 (19864): Successfully stopped VM.
2025-02-22 19:05:56 (19864): Deregistering VM. (boinc_3fe6b08a3475d2e5, slot#1)
2025-02-22 19:05:56 (19864): Removing network bandwidth throttle group from VM.
2025-02-22 19:05:57 (19864): Removing VM from VirtualBox.
19:06:02 (19864): called boinc_finish(0)

</stderr_txt>
]]>

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