Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
13:44:23 (888251): wrapper (7.7.26015): starting
13:44:23 (888251): wrapper: running run_atlas (--nthreads 4)
[2025-02-24 13:44:23] Arguments: --nthreads 4
[2025-02-24 13:44:23] Threads: 4
[2025-02-24 13:44:23] Checking for CVMFS
[2025-02-24 13:44:23] No cvmfs_config command found, will try listing directly
[2025-02-24 13:44:23] CVMFS is ok
[2025-02-24 13:44:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-24 13:44:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-24 13:44:23] Further information can be found at the LHC@home message board.
[2025-02-24 13:44:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-24 13:44:23] Checking for apptainer binary...
[2025-02-24 13:44:23] which: no apptainer in ((null))
[2025-02-24 13:44:23] apptainer is not installed, using version from CVMFS
[2025-02-24 13:44:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-24 13:44:24] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot72/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut12.grid.cesnet.cz
[2025-02-24 13:44:24] apptainer works
[2025-02-24 13:44:24] Set ATHENA_PROC_NUMBER=4
[2025-02-24 13:44:24] Set ATHENA_CORE_NUMBER=4
[2025-02-24 13:44:24] Starting ATLAS job with PandaID=6522458476
[2025-02-24 13:44:24] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot72/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-24 19:45:53]  *** The last 200 lines of the pilot log: ***
[2025-02-24 19:45:53] 2025-02-24 18:45:32,442 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-24 19:45:53] 2025-02-24 18:45:32,448 | INFO     | fitting pss+swap vs Time
[2025-02-24 19:45:53] 2025-02-24 18:45:32,449 | INFO     | model: linear, x: [1740401106.0, 1740401167.0, 1740401228.0, 1740401289.0, 1740401350.0, 1740401411.0, 1740401472.0, 1740401533.0, 1740401594.0, 1740401655.0, 1740
[2025-02-24 19:45:53] 2025-02-24 18:45:32,449 | INFO     | sum of square deviations: 13872669410.0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,452 | INFO     | sum of deviations: 132021293682.99998
[2025-02-24 19:45:53] 2025-02-24 18:45:32,453 | INFO     | mean x: 1740411903.0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,453 | INFO     | mean y: 2349647.095774648
[2025-02-24 19:45:53] 2025-02-24 18:45:32,453 | INFO     | -- intersect: -16560535561.552177
[2025-02-24 19:45:53] 2025-02-24 18:45:32,453 | INFO     | intersect: -16560535561.552177
[2025-02-24 19:45:53] 2025-02-24 18:45:32,453 | INFO     | chi2: 4.735015962891461
[2025-02-24 19:45:53] 2025-02-24 18:45:32,454 | INFO     | model: linear, x: [1740401106.0, 1740401167.0, 1740401228.0, 1740401289.0, 1740401350.0, 1740401411.0, 1740401472.0, 1740401533.0, 1740401594.0, 1740401655.0, 1740
[2025-02-24 19:45:53] 2025-02-24 18:45:32,457 | INFO     | sum of square deviations: 13294714387.5
[2025-02-24 19:45:53] 2025-02-24 18:45:32,460 | INFO     | sum of deviations: 153671219276.00003
[2025-02-24 19:45:53] 2025-02-24 18:45:32,460 | INFO     | mean x: 1740411750.5
[2025-02-24 19:45:53] 2025-02-24 18:45:32,460 | INFO     | mean y: 2355290.6685714284
[2025-02-24 19:45:53] 2025-02-24 18:45:32,460 | INFO     | -- intersect: -20114752000.713062
[2025-02-24 19:45:53] 2025-02-24 18:45:32,460 | INFO     | intersect: -20114752000.713062
[2025-02-24 19:45:53] 2025-02-24 18:45:32,461 | INFO     | chi2: 3.934997829930228
[2025-02-24 19:45:53] 2025-02-24 18:45:32,461 | INFO     | current chi2=3.934997829930228 (change=16.895785341190237 %)
[2025-02-24 19:45:53] 2025-02-24 18:45:32,461 | INFO     | right removable region: 349
[2025-02-24 19:45:53] 2025-02-24 18:45:32,462 | INFO     | model: linear, x: [1740401411.0, 1740401472.0, 1740401533.0, 1740401594.0, 1740401655.0, 1740401716.0, 1740401777.0, 1740401838.0, 1740401899.0, 1740401960.0, 1740
[2025-02-24 19:45:53] 2025-02-24 18:45:32,462 | INFO     | sum of square deviations: 13294714387.5
[2025-02-24 19:45:53] 2025-02-24 18:45:32,465 | INFO     | sum of deviations: 49884080409.99997
[2025-02-24 19:45:53] 2025-02-24 18:45:32,465 | INFO     | mean x: 1740412055.5
[2025-02-24 19:45:53] 2025-02-24 18:45:32,465 | INFO     | mean y: 2371280.8971428573
[2025-02-24 19:45:53] 2025-02-24 18:45:32,466 | INFO     | -- intersect: -6527957419.110467
[2025-02-24 19:45:53] 2025-02-24 18:45:32,466 | INFO     | intersect: -6527957419.110467
[2025-02-24 19:45:53] 2025-02-24 18:45:32,466 | INFO     | chi2: 2.4000388515095374
[2025-02-24 19:45:53] 2025-02-24 18:45:32,466 | INFO     | current chi2=2.4000388515095374 (change=49.31297232535745 %)
[2025-02-24 19:45:53] 2025-02-24 18:45:32,467 | INFO     | model: linear, x: [1740401716.0, 1740401777.0, 1740401838.0, 1740401899.0, 1740401960.0, 1740402021.0, 1740402082.0, 1740402143.0, 1740402204.0, 1740402265.0, 1740
[2025-02-24 19:45:53] 2025-02-24 18:45:32,467 | INFO     | sum of square deviations: 12733038740.0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,470 | INFO     | sum of deviations: -18043990137.000008
[2025-02-24 19:45:53] 2025-02-24 18:45:32,470 | INFO     | mean x: 1740412208.0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,470 | INFO     | mean y: 2389727.208695652
[2025-02-24 19:45:53] 2025-02-24 18:45:32,471 | INFO     | -- intersect: 2468727995.450422
[2025-02-24 19:45:53] 2025-02-24 18:45:32,471 | INFO     | intersect: 2468727995.450422
[2025-02-24 19:45:53] 2025-02-24 18:45:32,471 | INFO     | chi2: 0.9393731845336392
[2025-02-24 19:45:53] 2025-02-24 18:45:32,471 | INFO     | current chi2=0.9393731845336392 (change=60.86008424643594 %)
[2025-02-24 19:45:53] 2025-02-24 18:45:32,472 | INFO     | model: linear, x: [1740402021.0, 1740402082.0, 1740402143.0, 1740402204.0, 1740402265.0, 1740402326.0, 1740402387.0, 1740402448.0, 1740402509.0, 1740402570.0, 1740
[2025-02-24 19:45:53] 2025-02-24 18:45:32,473 | INFO     | sum of square deviations: 12187409905.0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,476 | INFO     | sum of deviations: -32073833245.0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,476 | INFO     | mean x: 1740412360.5
[2025-02-24 19:45:53] 2025-02-24 18:45:32,476 | INFO     | mean y: 2393626.276470588
[2025-02-24 19:45:53] 2025-02-24 18:45:32,476 | INFO     | -- intersect: 4582669194.534205
[2025-02-24 19:45:53] 2025-02-24 18:45:32,477 | INFO     | intersect: 4582669194.534205
[2025-02-24 19:45:53] 2025-02-24 18:45:32,477 | INFO     | chi2: 0.838003621162028
[2025-02-24 19:45:53] 2025-02-24 18:45:32,477 | INFO     | current chi2=0.838003621162028 (change=10.7911919395418 %)
[2025-02-24 19:45:53] 2025-02-24 18:45:32,477 | INFO     | left removable region: 30
[2025-02-24 19:45:53] 2025-02-24 18:45:32,478 | INFO     | model: linear, x: [1740402936.0, 1740402997.0, 1740403058.0, 1740403119.0, 1740403180.0, 1740403241.0, 1740403302.0, 1740403363.0, 1740403424.0, 1740403485.0, 1740
[2025-02-24 19:45:53] 2025-02-24 18:45:32,478 | INFO     | sum of square deviations: 10065751520.0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,481 | INFO     | sum of deviations: -13323910237.999996
[2025-02-24 19:45:53] 2025-02-24 18:45:32,481 | INFO     | mean x: 1740412635.0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,481 | INFO     | mean y: 2401569.369905956
[2025-02-24 19:45:53] 2025-02-24 18:45:32,481 | INFO     | -- intersect: 2306164152.7940845
[2025-02-24 19:45:53] 2025-02-24 18:45:32,481 | INFO     | intersect: 2306164152.7940845
[2025-02-24 19:45:53] 2025-02-24 18:45:32,482 | INFO     | chi2: 0.009098835599969816
[2025-02-24 19:45:53] 2025-02-24 18:45:32,482 | INFO     | -- intersect: 2306164152.7940845
[2025-02-24 19:45:53] 2025-02-24 18:45:32,482 | INFO     | current memory leak: -1.32 B/s (using 319 data points, chi2=0.01)
[2025-02-24 19:45:53] 2025-02-24 18:45:32,482 | INFO     | ..............................
[2025-02-24 19:45:53] 2025-02-24 18:45:32,483 | INFO     | . Timing measurements:
[2025-02-24 19:45:53] 2025-02-24 18:45:32,483 | INFO     | . get job = 0 s
[2025-02-24 19:45:53] 2025-02-24 18:45:32,483 | INFO     | . initial setup = 1 s
[2025-02-24 19:45:53] 2025-02-24 18:45:32,483 | INFO     | . payload setup = 7 s
[2025-02-24 19:45:53] 2025-02-24 18:45:32,483 | INFO     | . stage-in = 0 s
[2025-02-24 19:45:53] 2025-02-24 18:45:32,483 | INFO     | . payload execution = 21616 s
[2025-02-24 19:45:53] 2025-02-24 18:45:32,483 | INFO     | . stage-out = 1 s
[2025-02-24 19:45:53] 2025-02-24 18:45:32,483 | INFO     | . log creation = 0 s
[2025-02-24 19:45:53] 2025-02-24 18:45:32,483 | INFO     | ..............................
[2025-02-24 19:45:53] 2025-02-24 18:45:32,585 | INFO     | 
[2025-02-24 19:45:53] 2025-02-24 18:45:32,585 | INFO     | job summary report
[2025-02-24 19:45:53] 2025-02-24 18:45:32,586 | INFO     | --------------------------------------------------
[2025-02-24 19:45:53] 2025-02-24 18:45:32,586 | INFO     | PanDA job id: 6522458476
[2025-02-24 19:45:53] 2025-02-24 18:45:32,586 | INFO     | task id: 43078919
[2025-02-24 19:45:53] 2025-02-24 18:45:32,586 | INFO     | errors: (none)
[2025-02-24 19:45:53] 2025-02-24 18:45:32,586 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-24 19:45:53] 2025-02-24 18:45:32,586 | INFO     | pilot state: finished 
[2025-02-24 19:45:53] 2025-02-24 18:45:32,586 | INFO     | transexitcode: 0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,586 | INFO     | exeerrorcode: 0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,586 | INFO     | exeerrordiag: 
[2025-02-24 19:45:53] 2025-02-24 18:45:32,586 | INFO     | exitcode: 0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,586 | INFO     | exitmsg: OK
[2025-02-24 19:45:53] 2025-02-24 18:45:32,587 | INFO     | cpuconsumptiontime: 82625 s
[2025-02-24 19:45:53] 2025-02-24 18:45:32,587 | INFO     | nevents: 400
[2025-02-24 19:45:53] 2025-02-24 18:45:32,587 | INFO     | neventsw: 0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,587 | INFO     | pid: 899729
[2025-02-24 19:45:53] 2025-02-24 18:45:32,587 | INFO     | pgrp: 899729
[2025-02-24 19:45:53] 2025-02-24 18:45:32,587 | INFO     | corecount: 4
[2025-02-24 19:45:53] 2025-02-24 18:45:32,587 | INFO     | event service: False
[2025-02-24 19:45:53] 2025-02-24 18:45:32,587 | INFO     | sizes: {0: 2383202, 1: 2383401, 7: 2383607, 12: 2383635, 21627: 2417086, 21630: 2426049, 21631: 2426233, 21640: 2426403}
[2025-02-24 19:45:53] 2025-02-24 18:45:32,587 | INFO     | --------------------------------------------------
[2025-02-24 19:45:53] 2025-02-24 18:45:32,587 | INFO     | 
[2025-02-24 19:45:53] 2025-02-24 18:45:32,587 | INFO     | executing command: ls -lF /scratch/boinc/var/slot72/slots/0
[2025-02-24 19:45:53] 2025-02-24 18:45:32,615 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,615 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,616 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,616 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,616 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,616 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,616 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,616 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,616 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,617 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,617 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,617 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,617 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,617 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,617 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-24 19:45:53] 2025-02-24 18:45:32,617 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,617 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-24 19:45:53] 2025-02-24 18:45:32,617 | INFO     | job 6522458476 has completed (purged errors)
[2025-02-24 19:45:53] 2025-02-24 18:45:32,618 | INFO     | overall cleanup function is called
[2025-02-24 19:45:53] 2025-02-24 18:45:33,622 | INFO     | --- collectZombieJob: --- 10, [899729]
[2025-02-24 19:45:53] 2025-02-24 18:45:33,622 | INFO     | zombie collector waiting for pid 899729
[2025-02-24 19:45:53] 2025-02-24 18:45:33,623 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-24 19:45:53] 2025-02-24 18:45:33,623 | INFO     | collected zombie processes
[2025-02-24 19:45:53] 2025-02-24 18:45:33,623 | INFO     | will attempt to kill all subprocesses of pid=899729
[2025-02-24 19:45:53] 2025-02-24 18:45:33,973 | INFO     | process IDs to be killed: [899729] (in reverse order)
[2025-02-24 19:45:53] 2025-02-24 18:45:34,234 | WARNING  | found no corresponding commands to process id(s)
[2025-02-24 19:45:53] 2025-02-24 18:45:34,235 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-24 19:45:53] 2025-02-24 18:45:34,261 | INFO     | did not find any defunct processes belonging to 899729
[2025-02-24 19:45:53] 2025-02-24 18:45:34,282 | INFO     | did not find any defunct processes belonging to 899729
[2025-02-24 19:45:53] 2025-02-24 18:45:34,282 | INFO     | ready for new job
[2025-02-24 19:45:53] 2025-02-24 18:45:34,282 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-24 19:45:53] 2025-02-24 18:45:34,285 | INFO     | **************************************
[2025-02-24 19:45:53] 2025-02-24 18:45:34,285 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-24 19:45:53] 2025-02-24 18:45:34,285 | INFO     | **************************************
[2025-02-24 19:45:53] 2025-02-24 18:45:34,285 | INFO     | 
[2025-02-24 19:45:53] 2025-02-24 18:45:34,294 | INFO     | architecture information:
[2025-02-24 19:45:53] 2025-02-24 18:45:34,294 | INFO     | executing command: cat /etc/os-release
[2025-02-24 19:45:53] 2025-02-24 18:45:34,315 | INFO     | cat /etc/os-release:
[2025-02-24 19:45:53] NAME="CentOS Linux"
[2025-02-24 19:45:53] VERSION="7 (Core)"
[2025-02-24 19:45:53] ID="centos"
[2025-02-24 19:45:53] ID_LIKE="rhel fedora"
[2025-02-24 19:45:53] VERSION_ID="7"
[2025-02-24 19:45:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-24 19:45:53] ANSI_COLOR="0;31"
[2025-02-24 19:45:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-24 19:45:53] HOME_URL="https://www.centos.org/"
[2025-02-24 19:45:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-24 19:45:53] 
[2025-02-24 19:45:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-24 19:45:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-24 19:45:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-24 19:45:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-24 19:45:53] 
[2025-02-24 19:45:53] 2025-02-24 18:45:34,316 | INFO     | **************************************
[2025-02-24 19:45:53] 2025-02-24 18:45:34,819 | INFO     | executing command: df -mP /scratch/boinc/var/slot72/slots/0
[2025-02-24 19:45:53] 2025-02-24 18:45:34,844 | INFO     | sufficient remaining disk space (3249349328896 B)
[2025-02-24 19:45:53] 2025-02-24 18:45:34,844 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-24 19:45:53] 2025-02-24 18:45:34,845 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-24 19:45:53] 2025-02-24 18:45:34,845 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-24 19:45:53] 2025-02-24 18:45:34,846 | INFO     | found 0 job(s) in 20 queues
[2025-02-24 19:45:53] 2025-02-24 18:45:34,846 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-24 19:45:53] 2025-02-24 18:45:34,846 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-24 19:45:53] 2025-02-24 18:45:34,937 | INFO     | all payload control threads have been joined
[2025-02-24 19:45:53] 2025-02-24 18:45:35,018 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-24 19:45:53] 2025-02-24 18:45:35,360 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-24 19:45:53] 2025-02-24 18:45:35,361 | INFO     | aborting loop
[2025-02-24 19:45:53] 2025-02-24 18:45:35,377 | INFO     | all data control threads have been joined
[2025-02-24 19:45:53] 2025-02-24 18:45:35,850 | INFO     | [job] retrieve thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:35,941 | INFO     | [payload] control thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:36,093 | INFO     | [payload] failed_post thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:36,167 | INFO     | [payload] validate_post thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:36,365 | INFO     | [job] job monitor thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:36,382 | INFO     | [data] control thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:36,417 | INFO     | all job control threads have been joined
[2025-02-24 19:45:53] 2025-02-24 18:45:36,563 | INFO     | [payload] execute_payloads thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:36,728 | INFO     | [job] create_data_payload thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:36,976 | INFO     | [data] copytool_in thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:37,024 | INFO     | [data] copytool_out thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:37,181 | INFO     | [payload] validate_pre thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:37,240 | INFO     | [job] validate thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:37,423 | INFO     | [job] control thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:37,594 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-24 19:45:53] 2025-02-24 18:45:38,336 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-24 19:45:53] 2025-02-24 18:45:38,599 | INFO     | [job] queue monitor thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:42,342 | INFO     | [data] queue_monitor thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:45,847 | INFO     | job.realtimelogging is not enabled
[2025-02-24 19:45:53] 2025-02-24 18:45:46,852 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-24 19:45:53] 2025-02-24 18:45:48,037 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23217704486720)>', '<ExcThread(monitor, started 23217469093632)>']
[2025-02-24 19:45:53] 2025-02-24 18:45:48,915 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-24 19:45:53] 2025-02-24 18:45:48,916 | INFO     | [monitor] control thread has ended
[2025-02-24 19:45:53] 2025-02-24 18:45:53,062 | INFO     | all workflow threads have been joined
[2025-02-24 19:45:53] 2025-02-24 18:45:53,063 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-24 19:45:53] 2025-02-24 18:45:53,063 | INFO     | traces error code: 0
[2025-02-24 19:45:53] 2025-02-24 18:45:53,063 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-24 19:45:53] 2025-02-24 18:45:53,215 [wrapper] ==== pilot stdout END ====
[2025-02-24 19:45:53] 2025-02-24 18:45:53,222 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-24 19:45:53] 2025-02-24 18:45:53,226 [wrapper] pilotpid: 892228
[2025-02-24 19:45:53] 2025-02-24 18:45:53,230 [wrapper] Pilot exit status: 0
[2025-02-24 19:45:53] 2025-02-24 18:45:53,246 [wrapper] pandaids: 6522458476
[2025-02-24 19:45:53] 2025-02-24 18:45:53,400 [wrapper] cleanup supervisor_pilot 2220939 892229
[2025-02-24 19:45:53] 2025-02-24 18:45:53,405 [wrapper] Test setup, not cleaning
[2025-02-24 19:45:53] 2025-02-24 18:45:53,414 [wrapper] apfmon messages muted
[2025-02-24 19:45:53] 2025-02-24 18:45:53,418 [wrapper] ==== wrapper stdout END ====
[2025-02-24 19:45:53] 2025-02-24 18:45:53,422 [wrapper] ==== wrapper stderr END ====
[2025-02-24 19:45:53]  *** Error codes and diagnostics ***
[2025-02-24 19:45:53]     "exeErrorCode": 0,
[2025-02-24 19:45:53]     "exeErrorDiag": "",
[2025-02-24 19:45:53]     "pilotErrorCode": 0,
[2025-02-24 19:45:53]     "pilotErrorDiag": "",
[2025-02-24 19:45:53]  *** Listing of results directory ***
[2025-02-24 19:45:53] total 662736
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc    491065 Feb 21 20:29 pilot3.tar.gz
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc      5118 Feb 21 20:34 queuedata.json
[2025-02-24 19:45:53] -rwx------ 1 boinc boinc     35865 Feb 21 20:35 runpilot2-wrapper.sh
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc       100 Feb 24 12:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-24 19:45:53] -rwxr-xr-x 1 boinc boinc      7986 Feb 24 12:55 run_atlas
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc       105 Feb 24 12:55 job.xml
[2025-02-24 19:45:53] -rw-r--r-- 2 boinc boinc 342143542 Feb 24 13:44 EVNT.43078917._002495.pool.root.1
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc      6677 Feb 24 13:44 init_data.xml
[2025-02-24 19:45:53] -rw-r--r-- 2 boinc boinc     17569 Feb 24 13:44 start_atlas.sh
[2025-02-24 19:45:53] drwxrwx--x 2 boinc boinc      4096 Feb 24 13:44 shared
[2025-02-24 19:45:53] -rw-r--r-- 2 boinc boinc    503556 Feb 24 13:44 input.tar.gz
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc         0 Feb 24 13:44 boinc_lockfile
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc      2547 Feb 24 13:44 pandaJob.out
[2025-02-24 19:45:53] -rw------- 1 boinc boinc       424 Feb 24 13:44 setup.sh.local
[2025-02-24 19:45:53] -rw------- 1 boinc boinc    987749 Feb 24 13:44 agis_schedconf.cvmfs.json
[2025-02-24 19:45:53] drwx------ 4 boinc boinc      4096 Feb 24 13:44 pilot3
[2025-02-24 19:45:53] -rw------- 1 boinc boinc 327149226 Feb 24 19:44 HITS.43078919._085035.pool.root.1
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc       531 Feb 24 19:44 boinc_task_state.xml
[2025-02-24 19:45:53] -rw------- 1 boinc boinc        95 Feb 24 19:44 pilot_heartbeat.json
[2025-02-24 19:45:53] -rw------- 1 boinc boinc      1031 Feb 24 19:45 memory_monitor_summary.json
[2025-02-24 19:45:53] -rw------- 1 boinc boinc   1582569 Feb 24 19:45 agis_ddmendpoints.agis.ALL.json
[2025-02-24 19:45:53] -rw------- 1 boinc boinc    434650 Feb 24 19:45 log.43078919._085035.job.log.tgz.1
[2025-02-24 19:45:53] -rw------- 1 boinc boinc      7704 Feb 24 19:45 heartbeat.json
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc      8192 Feb 24 19:45 boinc_mmap_file
[2025-02-24 19:45:53] -rw------- 1 boinc boinc      4421 Feb 24 19:45 pilotlog.txt
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc        27 Feb 24 19:45 wrapper_checkpoint.txt
[2025-02-24 19:45:53] -rw------- 1 boinc boinc   2335855 Feb 24 19:45 log.43078919._085035.job.log.1
[2025-02-24 19:45:53] -rw------- 1 boinc boinc       357 Feb 24 19:45 output.list
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc       620 Feb 24 19:45 runtime_log
[2025-02-24 19:45:53] -rw------- 1 boinc boinc   2785280 Feb 24 19:45 result.tar.gz
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc     11424 Feb 24 19:45 runtime_log.err
[2025-02-24 19:45:53] -rw------- 1 boinc boinc       667 Feb 24 19:45 DzLMDmYzn56n9Rq4apOajLDm4fhM0noT9bVoFjIUDmzhdKDmfEm7Wm.diag
[2025-02-24 19:45:53] -rw-r--r-- 1 boinc boinc     21325 Feb 24 19:45 stderr.txt
[2025-02-24 19:45:53] HITS file was successfully produced:
[2025-02-24 19:45:53] -rw------- 1 boinc boinc 327149226 Feb 24 19:44 shared/HITS.pool.root.1
[2025-02-24 19:45:53]  *** Contents of shared directory: ***
[2025-02-24 19:45:53] total 656852
[2025-02-24 19:45:53] -rw-r--r-- 2 boinc boinc 342143542 Feb 24 13:44 ATLAS.root_0
[2025-02-24 19:45:53] -rw-r--r-- 2 boinc boinc     17569 Feb 24 13:44 start_atlas.sh
[2025-02-24 19:45:53] -rw-r--r-- 2 boinc boinc    503556 Feb 24 13:44 input.tar.gz
[2025-02-24 19:45:53] -rw------- 1 boinc boinc 327149226 Feb 24 19:44 HITS.pool.root.1
[2025-02-24 19:45:53] -rw------- 1 boinc boinc   2785280 Feb 24 19:45 result.tar.gz
19:45:55 (888251): run_atlas exited; CPU time 82221.728878
19:45:55 (888251): called boinc_finish(0)

</stderr_txt>
]]>

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