Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-22 10:50:52 (10204): Detected: vboxwrapper 26206
2025-02-22 10:50:52 (10204): Detected: BOINC client v7.20.2
2025-02-22 10:50:52 (10204): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-22 10:50:52 (10204): Successfully copied 'init_data.xml' to the shared directory.
2025-02-22 10:50:53 (10204): Create VM. (boinc_959cc04a4c323516, slot#1)
2025-02-22 10:50:53 (10204): Setting Memory Size for VM. (5900MB)
2025-02-22 10:50:54 (10204): Setting CPU Count for VM. (3)
2025-02-22 10:50:54 (10204): Setting Chipset Options for VM.
2025-02-22 10:50:54 (10204): Setting Graphics Controller Options for VM.
2025-02-22 10:50:54 (10204): Setting Boot Options for VM.
2025-02-22 10:50:55 (10204): Setting Network Configuration for NAT.
2025-02-22 10:50:55 (10204): Enabling VM Network Access.
2025-02-22 10:50:55 (10204): Disabling USB Support for VM.
2025-02-22 10:50:55 (10204): Disabling COM Port Support for VM.
2025-02-22 10:50:56 (10204): Disabling LPT Port Support for VM.
2025-02-22 10:50:56 (10204): Disabling Audio Support for VM.
2025-02-22 10:50:56 (10204): Disabling Clipboard Support for VM.
2025-02-22 10:50:56 (10204): Disabling Drag and Drop Support for VM.
2025-02-22 10:50:57 (10204): Adding storage controller(s) to VM.
2025-02-22 10:50:57 (10204): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-22 10:50:57 (10204): Adding VirtualBox Guest Additions to VM.
2025-02-22 10:50:58 (10204): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-22 10:50:58 (10204): forwarding host port 56977 to guest port 80
2025-02-22 10:50:58 (10204): Enabling remote desktop for VM.
2025-02-22 10:50:59 (10204): Enabling shared directory for VM.
2025-02-22 10:50:59 (10204): Starting VM using VBoxManage interface. (boinc_959cc04a4c323516, slot#1)
2025-02-22 10:51:05 (10204): Successfully started VM. (PID = '12540')
2025-02-22 10:51:05 (10204): Reporting VM Process ID to BOINC.
2025-02-22 10:51:05 (10204): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-22 10:51:05 (10204): Guest Log: CPUID EDX: 0x178bfbff
2025-02-22 10:51:05 (10204): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-22 10:51:05 (10204): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-22 10:51:05 (10204): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-22 10:51:05 (10204): Detected: Web Application Enabled (http://localhost:56977)
2025-02-22 10:51:05 (10204): Detected: Remote Desktop Enabled (localhost:56978)
2025-02-22 10:51:05 (10204): Preference change detected
2025-02-22 10:51:05 (10204): Setting CPU throttle for VM. (100%)
2025-02-22 10:51:05 (10204): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-22 10:51:07 (10204): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-22 10:51:07 (10204): Guest Log: BIOS: Booting from Hard Disk...
2025-02-22 10:51:09 (10204): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-22 10:51:09 (10204): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-22 10:51:09 (10204): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-22 10:51:14 (10204): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-22 10:51:14 (10204): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-22 10:51:19 (10204): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-22 10:51:19 (10204): Guest Log: 00:00:00.000148 main     Log opened 2025-02-22T10:51:17.162710000Z
2025-02-22 10:51:19 (10204): Guest Log: 00:00:00.000228 main     OS Product: Linux
2025-02-22 10:51:19 (10204): Guest Log: 00:00:00.000252 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-22 10:51:19 (10204): Guest Log: 00:00:00.000270 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-22 10:51:19 (10204): Guest Log: 00:00:00.000288 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-22 10:51:19 (10204): Guest Log: 00:00:00.000288 main     Process ID: 1338
2025-02-22 10:51:19 (10204): Guest Log: 00:00:00.000288 main     Package type: LINUX_64BITS_GENERIC
2025-02-22 10:51:19 (10204): Guest Log: 00:00:00.000948 main     5.2.32 r132073 started. Verbose level = 0
2025-02-22 10:51:19 (10204): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-22 10:51:19 (10204): Guest Log: [INFO] Mounting shared directory
2025-02-22 10:51:19 (10204): Guest Log: [INFO] Checking for init_data.xml
2025-02-22 10:51:21 (10204): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-22 10:51:21 (10204): Guest Log: [INFO] Detected branch: prod
2025-02-22 10:51:21 (10204): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-22 10:51:21 (10204): Guest Log: Copying input files
2025-02-22 10:51:23 (10204): Guest Log: Copied input files into RunAtlas.
2025-02-22 10:51:23 (10204): Guest Log: Detected user-configured HTTP proxy at http://192.168.0.39:3128 - will set in /etc/cvmfs/default.local
2025-02-22 10:51:29 (10204): Guest Log: 00:00:10.002304 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 300 147 000ns (GuestNow=1 740 217 888 864 330 000 ns GuestLast=1 740 221 477 164 477 000 ns fSetTimeLastLoop=true )
2025-02-22 10:51:31 (10204): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-22 10:51:31 (10204): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-22 10:51:31 (10204): Guest Log: 2.6.3.0 1613 0 29616 142934 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.39:3128 1
2025-02-22 10:51:32 (10204): Guest Log: copied the webapp to /var/www
2025-02-22 10:51:32 (10204): Guest Log: ATHENA_PROC_NUMBER=3
2025-02-22 10:51:32 (10204): Guest Log: ATHENA_CORE_NUMBER=3
2025-02-22 10:51:32 (10204): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-22 10:51:32 (10204): Guest Log:  *** Starting ATLAS job. (PandaID=6522500542 taskID=43205094) ***
2025-02-22 12:31:08 (10204): Status Report: Elapsed Time: '6000.000000'
2025-02-22 12:31:08 (10204): Status Report: CPU Time: '16057.171875'
2025-02-22 14:11:11 (10204): Status Report: Elapsed Time: '12000.000000'
2025-02-22 14:11:11 (10204): Status Report: CPU Time: '33972.218750'
2025-02-22 15:51:14 (10204): Status Report: Elapsed Time: '18000.000000'
2025-02-22 15:51:14 (10204): Status Report: CPU Time: '51887.046875'
2025-02-22 17:31:17 (10204): Status Report: Elapsed Time: '24000.000000'
2025-02-22 17:31:17 (10204): Status Report: CPU Time: '69800.875000'
2025-02-22 19:05:59 (10204): Guest Log:  *** Job finished ***
2025-02-22 19:05:59 (10204): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:33,345 | INFO     | [data] queue_monitor thread has finished
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:36,924 | INFO     | job.realtimelogging is not enabled
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:37,926 | INFO     | [payload] run_realtimelog thread has finished
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:38,591 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139734118410048)>', '<ExcThread(monitor, started 139733296457472)>']
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:38,927 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:38,927 | INFO     | [monitor] control thread has ended
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,597 | INFO     | all workflow threads have been joined
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,597 | INFO     | end of generic workflow (traces error code: 0)
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,597 | INFO     | traces error code: 0
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,598 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,698 [wrapper] ==== pilot stdout END ====
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,702 [wrapper] ==== wrapper stdout RESUME ====
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,705 [wrapper] pilotpid: 5927
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,709 [wrapper] Pilot exit status: 0
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,898 [wrapper] pandaids: 6522500542
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,920 [wrapper] cleanup supervisor_pilot 10844 5928
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,924 [wrapper] Test setup, not cleaning
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,931 [wrapper] apfmon messages muted
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,935 [wrapper] ==== wrapper stdout END ====
2025-02-22 19:05:59 (10204): Guest Log: 2025-02-22 18:05:43,938 [wrapper] ==== wrapper stderr END ====
2025-02-22 19:05:59 (10204): Guest Log:  *** Error codes and diagnostics ***
2025-02-22 19:05:59 (10204): Guest Log:     "exeErrorCode": 0,
2025-02-22 19:05:59 (10204): Guest Log:     "exeErrorDiag": "",
2025-02-22 19:05:59 (10204): Guest Log:     "pilotErrorCode": 0,
2025-02-22 19:05:59 (10204): Guest Log:     "pilotErrorDiag": "",
2025-02-22 19:05:59 (10204): Guest Log:  *** Listing of results directory ***
2025-02-22 19:05:59 (10204): Guest Log: total 330516
2025-02-22 19:05:59 (10204): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 21 20:25 pilot3.tar.gz
2025-02-22 19:05:59 (10204): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 21 20:29 queuedata.json
2025-02-22 19:05:59 (10204): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 21 20:31 runpilot2-wrapper.sh
2025-02-22 19:05:59 (10204): Guest Log: -rwxr-xr-x. 1 atlas atlas      8882 Feb 22 09:51 init_data.xml
2025-02-22 19:05:59 (10204): Guest Log: -rwxr-xr-x. 1 atlas atlas    503551 Feb 22 09:51 input.tar.gz
2025-02-22 19:05:59 (10204): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 22 09:51 start_atlas.sh
2025-02-22 19:05:59 (10204): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 22 09:51 EVNT.43092757._002040.pool.root.1 -> /data/./ATLAS.root_0
2025-02-22 19:05:59 (10204): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Feb 22 09:51 pandaJob.out
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas       459 Feb 22 09:51 setup.sh.local
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas    988034 Feb 22 09:52 agis_schedconf.cvmfs.json
2025-02-22 19:05:59 (10204): Guest Log: drwx------. 4 atlas atlas      4096 Feb 22 09:52 pilot3
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas 326673560 Feb 22 18:04 HITS.43205094._033608.pool.root.1
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas        95 Feb 22 18:05 pilot_heartbeat.json
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas      1029 Feb 22 18:05 memory_monitor_summary.json
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 22 18:05 agis_ddmendpoints.agis.ALL.json
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas    499989 Feb 22 18:05 log.43205094._033608.job.log.tgz.1
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas      7738 Feb 22 18:05 heartbeat.json
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas      4533 Feb 22 18:05 pilotlog.txt
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas   3517694 Feb 22 18:05 log.43205094._033608.job.log.1
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas       357 Feb 22 18:05 output.list
2025-02-22 19:05:59 (10204): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 22 18:05 runtime_log
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas   4034560 Feb 22 18:05 result.tar.gz
2025-02-22 19:05:59 (10204): Guest Log: -rw-r--r--. 1 atlas atlas     11299 Feb 22 18:05 runtime_log.err
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas       659 Feb 22 18:05 4DLNDm0qo56n9Rq4apOajLDm4fhM0noT9bVoFjIUDmFkdKDm4jBSln.diag
2025-02-22 19:05:59 (10204): Guest Log: Looking for outputfile HITS.43205094._033608.pool.root.1
2025-02-22 19:05:59 (10204): Guest Log: HITS file was successfully produced
2025-02-22 19:05:59 (10204): Guest Log: -rw-------. 1 atlas atlas 326673560 Feb 22 18:04 /home/atlas/RunAtlas/HITS.43205094._033608.pool.root.1
2025-02-22 19:06:00 (10204): Guest Log: Successfully finished the ATLAS job!
2025-02-22 19:06:00 (10204): Guest Log: Copying the results back to the shared directory!
2025-02-22 19:06:00 (10204): Guest Log:  *** Contents of shared directory: ***
2025-02-22 19:06:00 (10204): Guest Log: total 658400
2025-02-22 19:06:00 (10204): Guest Log: -rwxrwxrwx. 1 root root 342953367 Feb 22 09:50 ATLAS.root_0
2025-02-22 19:06:00 (10204): Guest Log: -rwxrwxrwx. 1 root root 326673560 Feb 22  2025 HITS.pool.root.1
2025-02-22 19:06:00 (10204): Guest Log: -rwxrwxrwx. 1 root root      8882 Feb 22 09:50 init_data.xml
2025-02-22 19:06:00 (10204): Guest Log: -rwxrwxrwx. 1 root root    503551 Feb 22 01:34 input.tar.gz
2025-02-22 19:06:00 (10204): Guest Log: -rwxrwxrwx. 1 root root   4034560 Feb 22  2025 result.tar.gz
2025-02-22 19:06:00 (10204): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 22 01:34 start_atlas.sh
2025-02-22 19:06:00 (10204): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-22 19:06:00 (10204): VM Completion File Detected.
2025-02-22 19:06:00 (10204): Powering off VM.
2025-02-22 19:06:02 (10204): Successfully stopped VM.
2025-02-22 19:06:02 (10204): Deregistering VM. (boinc_959cc04a4c323516, slot#1)
2025-02-22 19:06:02 (10204): Removing network bandwidth throttle group from VM.
2025-02-22 19:06:02 (10204): Removing VM from VirtualBox.
19:06:07 (10204): called boinc_finish(0)

</stderr_txt>
]]>

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