Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
02:22:35 (3383649): wrapper (7.7.26015): starting
02:22:35 (3383649): wrapper: running run_atlas (--nthreads 12)
[2025-02-22 02:22:35] Arguments: --nthreads 12
[2025-02-22 02:22:35] Threads: 12
[2025-02-22 02:22:35] Checking for CVMFS
[2025-02-22 02:22:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-22 02:22:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-22 02:22:35] Running cvmfs_config stat atlas.cern.ch
[2025-02-22 02:22:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-22 02:22:36] 2.11.5.0 1490239 27422 197052 142934 0 578 32999016 45568000 11780 130560 0 116348236 99.649 135454047 26445 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-02-22 02:22:36] CVMFS is ok
[2025-02-22 02:22:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-22 02:22:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-22 02:22:36] Further information can be found at the LHC@home message board.
[2025-02-22 02:22:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-22 02:22:36] Checking for apptainer binary...
[2025-02-22 02:22:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-22 02:22:36] Running /usr/bin/apptainer --version
[2025-02-22 02:22:36] apptainer version 1.3.5-1.el9
[2025-02-22 02:22:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-22 02:22:36] WARNING: Environment variable TMPDIR already has value [/home/boinc/slots/0/.apptainertmp], will not forward new value [/home/boinc] from parent process environment wns0113.triumf.lcg
[2025-02-22 02:22:36] apptainer works
[2025-02-22 02:22:36] Set ATHENA_PROC_NUMBER=12
[2025-02-22 02:22:36] Set ATHENA_CORE_NUMBER=12
[2025-02-22 02:22:36] Starting ATLAS job with PandaID=6522417024
[2025-02-22 02:22:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-22 05:05:43]  *** The last 200 lines of the pilot log: ***
[2025-02-22 05:05:43] 2025-02-22 13:05:23,061 | INFO     | model: linear, x: [1740220149.0, 1740220210.0, 1740220271.0, 1740220332.0, 1740220393.0, 1740220454.0, 1740220515.0, 1740220576.0, 1740220637.0, 1740220698.0, 1740
[2025-02-22 05:05:43] 2025-02-22 13:05:23,061 | INFO     | sum of square deviations: 1132392454.8376615
[2025-02-22 05:05:43] 2025-02-22 13:05:23,062 | INFO     | sum of deviations: 58753742372.863655
[2025-02-22 05:05:43] 2025-02-22 13:05:23,062 | INFO     | mean x: 1740224815.6038961
[2025-02-22 05:05:43] 2025-02-22 13:05:23,062 | INFO     | mean y: 2711437.227272727
[2025-02-22 05:05:43] 2025-02-22 13:05:23,062 | INFO     | -- intersect: -90288176717.36852
[2025-02-22 05:05:43] 2025-02-22 13:05:23,062 | INFO     | intersect: -90288176717.36852
[2025-02-22 05:05:43] 2025-02-22 13:05:23,063 | INFO     | chi2: 3.8021751730890387
[2025-02-22 05:05:43] 2025-02-22 13:05:23,063 | INFO     | current chi2=3.8021751730890387 (change=41.02261269735905 %)
[2025-02-22 05:05:43] 2025-02-22 13:05:23,063 | INFO     | model: linear, x: [1740220454.0, 1740220515.0, 1740220576.0, 1740220637.0, 1740220698.0, 1740220759.0, 1740220820.0, 1740220881.0, 1740220942.0, 1740221003.0, 1740
[2025-02-22 05:05:43] 2025-02-22 13:05:23,063 | INFO     | sum of square deviations: 1025622782.2818773
[2025-02-22 05:05:43] 2025-02-22 13:05:23,064 | INFO     | sum of deviations: 22883754002.650993
[2025-02-22 05:05:43] 2025-02-22 13:05:23,064 | INFO     | mean x: 1740224968.1073825
[2025-02-22 05:05:43] 2025-02-22 13:05:23,064 | INFO     | mean y: 2762786.7718120804
[2025-02-22 05:05:43] 2025-02-22 13:05:23,064 | INFO     | -- intersect: -38825235934.98023
[2025-02-22 05:05:43] 2025-02-22 13:05:23,064 | INFO     | intersect: -38825235934.98023
[2025-02-22 05:05:43] 2025-02-22 13:05:23,064 | INFO     | chi2: 2.1207017115363422
[2025-02-22 05:05:43] 2025-02-22 13:05:23,064 | INFO     | current chi2=2.1207017115363422 (change=44.22398719169481 %)
[2025-02-22 05:05:43] 2025-02-22 13:05:23,065 | INFO     | model: linear, x: [1740220759.0, 1740220820.0, 1740220881.0, 1740220942.0, 1740221003.0, 1740221064.0, 1740221126.0, 1740221187.0, 1740221247.0, 1740221308.0, 1740
[2025-02-22 05:05:43] 2025-02-22 13:05:23,065 | INFO     | sum of square deviations: 925783472.22222
[2025-02-22 05:05:43] 2025-02-22 13:05:23,065 | INFO     | sum of deviations: -6988783172.944445
[2025-02-22 05:05:43] 2025-02-22 13:05:23,065 | INFO     | mean x: 1740225120.6111112
[2025-02-22 05:05:43] 2025-02-22 13:05:23,065 | INFO     | mean y: 2808169.590277778
[2025-02-22 05:05:43] 2025-02-22 13:05:23,065 | INFO     | -- intersect: 13139849826.716381
[2025-02-22 05:05:43] 2025-02-22 13:05:23,065 | INFO     | intersect: 13139849826.716381
[2025-02-22 05:05:43] 2025-02-22 13:05:23,066 | INFO     | chi2: 0.8433187758723272
[2025-02-22 05:05:43] 2025-02-22 13:05:23,066 | INFO     | current chi2=0.8433187758723272 (change=60.233974854418115 %)
[2025-02-22 05:05:43] 2025-02-22 13:05:23,066 | INFO     | model: linear, x: [1740221064.0, 1740221126.0, 1740221187.0, 1740221247.0, 1740221308.0, 1740221369.0, 1740221430.0, 1740221492.0, 1740221552.0, 1740221614.0, 1740
[2025-02-22 05:05:43] 2025-02-22 13:05:23,066 | INFO     | sum of square deviations: 832641962.1582756
[2025-02-22 05:05:43] 2025-02-22 13:05:23,067 | INFO     | sum of deviations: -13625195889.223019
[2025-02-22 05:05:43] 2025-02-22 13:05:23,067 | INFO     | mean x: 1740225273.115108
[2025-02-22 05:05:43] 2025-02-22 13:05:23,067 | INFO     | mean y: 2818900.201438849
[2025-02-22 05:05:43] 2025-02-22 13:05:23,067 | INFO     | -- intersect: 28479536763.554577
[2025-02-22 05:05:43] 2025-02-22 13:05:23,067 | INFO     | intersect: 28479536763.554577
[2025-02-22 05:05:43] 2025-02-22 13:05:23,067 | INFO     | chi2: 0.7454497456073464
[2025-02-22 05:05:43] 2025-02-22 13:05:23,067 | INFO     | current chi2=0.7454497456073464 (change=11.60522367876195 %)
[2025-02-22 05:05:43] 2025-02-22 13:05:23,067 | INFO     | left removable region: 40
[2025-02-22 05:05:43] 2025-02-22 13:05:23,067 | INFO     | model: linear, x: [1740222285.0, 1740222345.0, 1740222406.0, 1740222467.0, 1740222528.0, 1740222589.0, 1740222650.0, 1740222711.0, 1740222772.0, 1740222833.0, 1740
[2025-02-22 05:05:43] 2025-02-22 13:05:23,067 | INFO     | sum of square deviations: 447360708.56637096
[2025-02-22 05:05:43] 2025-02-22 13:05:23,068 | INFO     | sum of deviations: 7936138.203539928
[2025-02-22 05:05:43] 2025-02-22 13:05:23,068 | INFO     | mean x: 1740225700.0619469
[2025-02-22 05:05:43] 2025-02-22 13:05:23,068 | INFO     | mean y: 2828220.256637168
[2025-02-22 05:05:43] 2025-02-22 13:05:23,068 | INFO     | -- intersect: -28043225.08173829
[2025-02-22 05:05:43] 2025-02-22 13:05:23,068 | INFO     | intersect: -28043225.08173829
[2025-02-22 05:05:43] 2025-02-22 13:05:23,068 | INFO     | chi2: 0.016529712164039947
[2025-02-22 05:05:43] 2025-02-22 13:05:23,068 | INFO     | -- intersect: -28043225.08173829
[2025-02-22 05:05:43] 2025-02-22 13:05:23,068 | INFO     | current memory leak: 0.02 B/s (using 113 data points, chi2=0.02)
[2025-02-22 05:05:43] 2025-02-22 13:05:23,069 | INFO     | ..............................
[2025-02-22 05:05:43] 2025-02-22 13:05:23,069 | INFO     | . Timing measurements:
[2025-02-22 05:05:43] 2025-02-22 13:05:23,069 | INFO     | . get job = 0 s
[2025-02-22 05:05:43] 2025-02-22 13:05:23,069 | INFO     | . initial setup = 4 s
[2025-02-22 05:05:43] 2025-02-22 13:05:23,069 | INFO     | . payload setup = 18 s
[2025-02-22 05:05:43] 2025-02-22 13:05:23,069 | INFO     | . stage-in = 0 s
[2025-02-22 05:05:43] 2025-02-22 13:05:23,069 | INFO     | . payload execution = 9684 s
[2025-02-22 05:05:43] 2025-02-22 13:05:23,070 | INFO     | . stage-out = 0 s
[2025-02-22 05:05:43] 2025-02-22 13:05:23,070 | INFO     | . log creation = 0 s
[2025-02-22 05:05:43] 2025-02-22 13:05:23,070 | INFO     | ..............................
[2025-02-22 05:05:43] 2025-02-22 13:05:23,141 | INFO     | size of work directory /home/boinc/slots/0/PanDA_Pilot-6522417024: 4054525 B (within 2537553920 B limit)
[2025-02-22 05:05:43] 2025-02-22 13:05:23,141 | INFO     | pfn file=/home/boinc/slots/0/PanDA_Pilot-6522417024/HITS.43205094._033251.pool.root.1 does not exist (skip from workdir size calculation)
[2025-02-22 05:05:43] 2025-02-22 13:05:23,141 | INFO     | total size of present files: 0 B (workdir size: 4054525 B)
[2025-02-22 05:05:43] 2025-02-22 13:05:23,142 | INFO     | output file size check: skipping output file /home/boinc/slots/0/PanDA_Pilot-6522417024/HITS.43205094._033251.pool.root.1 since it does not exist
[2025-02-22 05:05:43] 2025-02-22 13:05:23,255 | INFO     | number of running child processes to parent process 3395681: 1
[2025-02-22 05:05:43] 2025-02-22 13:05:23,256 | INFO     | maximum number of monitored processes: 6
[2025-02-22 05:05:43] 2025-02-22 13:05:23,256 | INFO     | aborting job monitoring since job object (job id=6522417024) has expired
[2025-02-22 05:05:43] 2025-02-22 13:05:23,547 | INFO     | 
[2025-02-22 05:05:43] 2025-02-22 13:05:23,547 | INFO     | job summary report
[2025-02-22 05:05:43] 2025-02-22 13:05:23,547 | INFO     | --------------------------------------------------
[2025-02-22 05:05:43] 2025-02-22 13:05:23,547 | INFO     | PanDA job id: 6522417024
[2025-02-22 05:05:43] 2025-02-22 13:05:23,548 | INFO     | task id: 43205094
[2025-02-22 05:05:43] 2025-02-22 13:05:23,548 | INFO     | errors: (none)
[2025-02-22 05:05:43] 2025-02-22 13:05:23,548 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-22 05:05:43] 2025-02-22 13:05:23,548 | INFO     | pilot state: finished 
[2025-02-22 05:05:43] 2025-02-22 13:05:23,548 | INFO     | transexitcode: 0
[2025-02-22 05:05:43] 2025-02-22 13:05:23,548 | INFO     | exeerrorcode: 0
[2025-02-22 05:05:43] 2025-02-22 13:05:23,548 | INFO     | exeerrordiag: 
[2025-02-22 05:05:43] 2025-02-22 13:05:23,549 | INFO     | exitcode: 0
[2025-02-22 05:05:43] 2025-02-22 13:05:23,549 | INFO     | exitmsg: OK
[2025-02-22 05:05:43] 2025-02-22 13:05:23,549 | INFO     | cpuconsumptiontime: 70395 s
[2025-02-22 05:05:43] 2025-02-22 13:05:23,549 | INFO     | nevents: 400
[2025-02-22 05:05:43] 2025-02-22 13:05:23,549 | INFO     | neventsw: 0
[2025-02-22 05:05:43] 2025-02-22 13:05:23,549 | INFO     | pid: 3395681
[2025-02-22 05:05:43] 2025-02-22 13:05:23,549 | INFO     | pgrp: 3395681
[2025-02-22 05:05:43] 2025-02-22 13:05:23,549 | INFO     | corecount: 12
[2025-02-22 05:05:43] 2025-02-22 13:05:23,549 | INFO     | event service: False
[2025-02-22 05:05:43] 2025-02-22 13:05:23,550 | INFO     | sizes: {0: 2382525, 1: 2383378, 10: 2383584, 12: 2383612, 9706: 2411871, 9708: 2420806, 9709: 2420990, 9714: 2421160}
[2025-02-22 05:05:43] 2025-02-22 13:05:23,550 | INFO     | --------------------------------------------------
[2025-02-22 05:05:43] 2025-02-22 13:05:23,550 | INFO     | 
[2025-02-22 05:05:43] 2025-02-22 13:05:23,550 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-02-22 05:05:43] 2025-02-22 13:05:23,573 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,574 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,575 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,575 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,575 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,575 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,576 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,576 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,576 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,577 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,577 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,577 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,577 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,578 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,578 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,578 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,578 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,578 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-22 05:05:43] 2025-02-22 13:05:23,578 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,579 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-22 05:05:43] 2025-02-22 13:05:23,579 | INFO     | job 6522417024 has completed (purged errors)
[2025-02-22 05:05:43] 2025-02-22 13:05:23,579 | INFO     | overall cleanup function is called
[2025-02-22 05:05:43] 2025-02-22 13:05:24,589 | INFO     | --- collectZombieJob: --- 10, [3395681]
[2025-02-22 05:05:43] 2025-02-22 13:05:24,589 | INFO     | zombie collector waiting for pid 3395681
[2025-02-22 05:05:43] 2025-02-22 13:05:24,589 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-22 05:05:43] 2025-02-22 13:05:24,589 | INFO     | collected zombie processes
[2025-02-22 05:05:43] 2025-02-22 13:05:24,589 | INFO     | will attempt to kill all subprocesses of pid=3395681
[2025-02-22 05:05:43] 2025-02-22 13:05:24,710 | INFO     | process IDs to be killed: [3395681] (in reverse order)
[2025-02-22 05:05:43] 2025-02-22 13:05:24,787 | WARNING  | found no corresponding commands to process id(s)
[2025-02-22 05:05:43] 2025-02-22 13:05:24,788 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-22 05:05:43] 2025-02-22 13:05:24,798 | INFO     | did not find any defunct processes belonging to 3395681
[2025-02-22 05:05:43] 2025-02-22 13:05:24,805 | INFO     | did not find any defunct processes belonging to 3395681
[2025-02-22 05:05:43] 2025-02-22 13:05:24,806 | INFO     | ready for new job
[2025-02-22 05:05:43] 2025-02-22 13:05:24,806 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-22 05:05:43] 2025-02-22 13:05:24,807 | INFO     | **************************************
[2025-02-22 05:05:43] 2025-02-22 13:05:24,808 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-22 05:05:43] 2025-02-22 13:05:24,808 | INFO     | **************************************
[2025-02-22 05:05:43] 2025-02-22 13:05:24,808 | INFO     | 
[2025-02-22 05:05:43] 2025-02-22 13:05:24,810 | INFO     | architecture information:
[2025-02-22 05:05:43] 2025-02-22 13:05:24,810 | INFO     | executing command: cat /etc/os-release
[2025-02-22 05:05:43] 2025-02-22 13:05:24,825 | INFO     | cat /etc/os-release:
[2025-02-22 05:05:43] NAME="CentOS Linux"
[2025-02-22 05:05:43] VERSION="7 (Core)"
[2025-02-22 05:05:43] ID="centos"
[2025-02-22 05:05:43] ID_LIKE="rhel fedora"
[2025-02-22 05:05:43] VERSION_ID="7"
[2025-02-22 05:05:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-22 05:05:43] ANSI_COLOR="0;31"
[2025-02-22 05:05:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-22 05:05:43] HOME_URL="https://www.centos.org/"
[2025-02-22 05:05:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-22 05:05:43] 
[2025-02-22 05:05:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-22 05:05:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-22 05:05:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-22 05:05:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-22 05:05:43] 
[2025-02-22 05:05:43] 2025-02-22 13:05:24,826 | INFO     | **************************************
[2025-02-22 05:05:43] 2025-02-22 13:05:25,282 | INFO     | PID=3387309 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-02-22 05:05:43] 2025-02-22 13:05:25,283 | INFO     | .. there are 21 such processes running
[2025-02-22 05:05:43] 2025-02-22 13:05:25,328 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-02-22 05:05:43] 2025-02-22 13:05:25,348 | INFO     | sufficient remaining disk space (1903585918976 B)
[2025-02-22 05:05:43] 2025-02-22 13:05:25,349 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-22 05:05:43] 2025-02-22 13:05:25,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-22 05:05:43] 2025-02-22 13:05:25,349 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-22 05:05:43] 2025-02-22 13:05:25,350 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-22 05:05:43] 2025-02-22 13:05:25,350 | INFO     | found 0 job(s) in 20 queues
[2025-02-22 05:05:43] 2025-02-22 13:05:25,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-22 05:05:43] 2025-02-22 13:05:25,351 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-22 05:05:43] 2025-02-22 13:05:25,759 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-02-22 05:05:43] 2025-02-22 13:05:25,759 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-02-22 05:05:43] 2025-02-22 13:05:25,759 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-22 05:05:43] 2025-02-22 13:05:25,759 | INFO     | will abort loop
[2025-02-22 05:05:43] 2025-02-22 13:05:26,327 | INFO     | all payload control threads have been joined
[2025-02-22 05:05:43] 2025-02-22 13:05:26,354 | INFO     | [job] retrieve thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:26,367 | INFO     | all data control threads have been joined
[2025-02-22 05:05:43] 2025-02-22 13:05:26,469 | INFO     | all job control threads have been joined
[2025-02-22 05:05:43] 2025-02-22 13:05:26,602 | INFO     | [payload] execute_payloads thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:26,631 | INFO     | [job] validate thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:26,765 | INFO     | [job] job monitor thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:27,022 | INFO     | [payload] failed_post thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:27,231 | INFO     | [job] create_data_payload thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:27,286 | INFO     | [data] copytool_in thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:27,332 | INFO     | [payload] control thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:27,356 | INFO     | [data] copytool_out thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:27,372 | INFO     | [data] control thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:27,405 | INFO     | [payload] validate_pre thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:27,418 | INFO     | [payload] validate_post thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:27,474 | INFO     | [job] control thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:28,049 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-22 05:05:43] 2025-02-22 13:05:28,150 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-22 05:05:43] 2025-02-22 13:05:29,155 | INFO     | [job] queue monitor thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:32,054 | INFO     | [data] queue_monitor thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:35,602 | INFO     | job.realtimelogging is not enabled
[2025-02-22 05:05:43] 2025-02-22 13:05:36,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-22 05:05:43] 2025-02-22 13:05:37,905 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139933322995520)>', '<ExcThread(monitor, started 139932517529344)>']
[2025-02-22 05:05:43] 2025-02-22 13:05:38,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-22 05:05:43] 2025-02-22 13:05:38,412 | INFO     | [monitor] control thread has ended
[2025-02-22 05:05:43] 2025-02-22 13:05:42,930 | INFO     | all workflow threads have been joined
[2025-02-22 05:05:43] 2025-02-22 13:05:42,931 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-22 05:05:43] 2025-02-22 13:05:42,931 | INFO     | traces error code: 0
[2025-02-22 05:05:43] 2025-02-22 13:05:42,932 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-22 05:05:43] 2025-02-22 13:05:43,070 [wrapper] ==== pilot stdout END ====
[2025-02-22 05:05:43] 2025-02-22 13:05:43,074 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-22 05:05:43] 2025-02-22 13:05:43,078 [wrapper] pilotpid: 3387309
[2025-02-22 05:05:43] 2025-02-22 13:05:43,082 [wrapper] Pilot exit status: 0
[2025-02-22 05:05:43] 2025-02-22 13:05:43,098 [wrapper] pandaids: 6522417024
[2025-02-22 05:05:43] 2025-02-22 13:05:43,153 [wrapper] cleanup supervisor_pilot 3932804 3387310
[2025-02-22 05:05:43] 2025-02-22 13:05:43,157 [wrapper] Test setup, not cleaning
[2025-02-22 05:05:43] 2025-02-22 13:05:43,164 [wrapper] apfmon messages muted
[2025-02-22 05:05:43] 2025-02-22 13:05:43,168 [wrapper] ==== wrapper stdout END ====
[2025-02-22 05:05:43] 2025-02-22 13:05:43,172 [wrapper] ==== wrapper stderr END ====
[2025-02-22 05:05:43]  *** Error codes and diagnostics ***
[2025-02-22 05:05:43]     "exeErrorCode": 0,
[2025-02-22 05:05:43]     "exeErrorDiag": "",
[2025-02-22 05:05:43]     "pilotErrorCode": 0,
[2025-02-22 05:05:43]     "pilotErrorDiag": "",
[2025-02-22 05:05:43]  *** Listing of results directory ***
[2025-02-22 05:05:43] total 658068
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc    491065 Feb 21 09:24 pilot3.tar.gz
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc      5118 Feb 21 09:34 queuedata.json
[2025-02-22 05:05:43] -rwx------. 1 boinc boinc     35865 Feb 21 09:36 runpilot2-wrapper.sh
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc       100 Feb 22 02:22 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-22 05:05:43] -rwxr-xr-x. 1 boinc boinc      7986 Feb 22 02:22 run_atlas
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc       105 Feb 22 02:22 job.xml
[2025-02-22 05:05:43] -rw-r--r--. 2 boinc boinc 345966692 Feb 22 02:22 EVNT.43092757._002035.pool.root.1
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc      6599 Feb 22 02:22 init_data.xml
[2025-02-22 05:05:43] -rw-r--r--. 2 boinc boinc    503551 Feb 22 02:22 input.tar.gz
[2025-02-22 05:05:43] -rw-r--r--. 2 boinc boinc     17569 Feb 22 02:22 start_atlas.sh
[2025-02-22 05:05:43] drwxrwx--x. 2 boinc boinc      4096 Feb 22 02:22 shared
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc         0 Feb 22 02:22 boinc_lockfile
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc      2544 Feb 22 02:22 pandaJob.out
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc       424 Feb 22 02:22 setup.sh.local
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc    988034 Feb 22 02:23 agis_schedconf.cvmfs.json
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc   1582569 Feb 22 02:23 agis_ddmendpoints.agis.ALL.json
[2025-02-22 05:05:43] drwx------. 4 boinc boinc      4096 Feb 22 02:23 pilot3
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc 321318394 Feb 22 05:04 HITS.43205094._033251.pool.root.1
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc       530 Feb 22 05:04 boinc_task_state.xml
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc        95 Feb 22 05:04 pilot_heartbeat.json
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc      1054 Feb 22 05:05 memory_monitor_summary.json
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc    406809 Feb 22 05:05 log.43205094._033251.job.log.tgz.1
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc      7759 Feb 22 05:05 heartbeat.json
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc        27 Feb 22 05:05 wrapper_checkpoint.txt
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc      8192 Feb 22 05:05 boinc_mmap_file
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc      4990 Feb 22 05:05 pilotlog.txt
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc    978672 Feb 22 05:05 log.43205094._033251.job.log.1
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc       357 Feb 22 05:05 output.list
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc       620 Feb 22 05:05 runtime_log
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc   1402880 Feb 22 05:05 result.tar.gz
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc       662 Feb 22 05:05 YnOKDmM8l56nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm8isKDm5NiJ0m.diag
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc     11144 Feb 22 05:05 runtime_log.err
[2025-02-22 05:05:43] -rw-r--r--. 1 boinc boinc     22249 Feb 22 05:05 stderr.txt
[2025-02-22 05:05:43] HITS file was successfully produced:
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc 321318394 Feb 22 05:04 shared/HITS.pool.root.1
[2025-02-22 05:05:43]  *** Contents of shared directory: ***
[2025-02-22 05:05:43] total 653540
[2025-02-22 05:05:43] -rw-r--r--. 2 boinc boinc 345966692 Feb 22 02:22 ATLAS.root_0
[2025-02-22 05:05:43] -rw-r--r--. 2 boinc boinc    503551 Feb 22 02:22 input.tar.gz
[2025-02-22 05:05:43] -rw-r--r--. 2 boinc boinc     17569 Feb 22 02:22 start_atlas.sh
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc 321318394 Feb 22 05:04 HITS.pool.root.1
[2025-02-22 05:05:43] -rw-------. 1 boinc boinc   1402880 Feb 22 05:05 result.tar.gz
05:05:45 (3383649): run_atlas exited; CPU time 70334.517200
05:05:45 (3383649): called boinc_finish(0)

</stderr_txt>
]]>

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