Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-22 10:57:54 (16676): Detected: vboxwrapper 26206
2025-02-22 10:57:54 (16676): Detected: BOINC client v8.0.2
2025-02-22 10:57:55 (16676): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-02-22 10:57:55 (16676): Successfully copied 'init_data.xml' to the shared directory.
2025-02-22 10:57:56 (16676): Create VM. (boinc_dd049bfa85b6f720, slot#8)
2025-02-22 10:57:56 (16676): Setting Memory Size for VM. (4800MB)
2025-02-22 10:57:57 (16676): Setting CPU Count for VM. (8)
2025-02-22 10:57:57 (16676): Setting Chipset Options for VM.
2025-02-22 10:57:57 (16676): Setting Graphics Controller Options for VM.
2025-02-22 10:57:58 (16676): Setting Boot Options for VM.
2025-02-22 10:57:58 (16676): Setting Network Configuration for NAT.
2025-02-22 10:57:58 (16676): Enabling VM Network Access.
2025-02-22 10:57:58 (16676): Disabling USB Support for VM.
2025-02-22 10:57:59 (16676): Disabling COM Port Support for VM.
2025-02-22 10:57:59 (16676): Disabling LPT Port Support for VM.
2025-02-22 10:57:59 (16676): Disabling Audio Support for VM.
2025-02-22 10:57:59 (16676): Disabling Clipboard Support for VM.
2025-02-22 10:58:00 (16676): Disabling Drag and Drop Support for VM.
2025-02-22 10:58:00 (16676): Adding storage controller(s) to VM.
2025-02-22 10:58:00 (16676): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-22 10:58:03 (16676): Adding VirtualBox Guest Additions to VM.
2025-02-22 10:58:03 (16676): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-22 10:58:04 (16676): forwarding host port 58341 to guest port 80
2025-02-22 10:58:04 (16676): Enabling remote desktop for VM.
2025-02-22 10:58:04 (16676): Required extension pack not installed, remote desktop not enabled.
2025-02-22 10:58:04 (16676): Enabling shared directory for VM.
2025-02-22 10:58:05 (16676): Starting VM using VBoxManage interface. (boinc_dd049bfa85b6f720, slot#8)
2025-02-22 10:58:10 (16676): Successfully started VM. (PID = '15944')
2025-02-22 10:58:10 (16676): Reporting VM Process ID to BOINC.
2025-02-22 10:58:10 (16676): Guest Log: BIOS: VirtualBox 7.1.4
2025-02-22 10:58:10 (16676): Guest Log: CPUID EDX: 0x178bfbff
2025-02-22 10:58:10 (16676): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-22 10:58:10 (16676): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-22 10:58:10 (16676): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-22 10:58:10 (16676): Detected: Web Application Enabled (http://localhost:58341)
2025-02-22 10:58:10 (16676): Preference change detected
2025-02-22 10:58:10 (16676): Setting CPU throttle for VM. (60%)
2025-02-22 10:58:10 (16676): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-22 10:58:12 (16676): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-22 10:58:12 (16676): Guest Log: BIOS: Booting from Hard Disk...
2025-02-22 10:58:15 (16676): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-22 10:58:15 (16676): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-22 10:58:15 (16676): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-22 10:58:23 (16676): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-22 10:58:23 (16676): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-22 10:58:30 (16676): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-22 10:58:30 (16676): Guest Log: 00:00:00.000164 main     Log opened 2025-02-22T10:58:28.117604000Z
2025-02-22 10:58:30 (16676): Guest Log: 00:00:00.000301 main     OS Product: Linux
2025-02-22 10:58:30 (16676): Guest Log: 00:00:00.000346 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-22 10:58:30 (16676): Guest Log: 00:00:00.000373 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-22 10:58:30 (16676): Guest Log: 00:00:00.000398 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-22 10:58:30 (16676): Guest Log: 00:00:00.000398 main     Process ID: 1377
2025-02-22 10:58:30 (16676): Guest Log: 00:00:00.000399 main     Package type: LINUX_64BITS_GENERIC
2025-02-22 10:58:30 (16676): Guest Log: 00:00:00.001138 main     5.2.32 r132073 started. Verbose level = 0
2025-02-22 10:58:30 (16676): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-22 10:58:30 (16676): Guest Log: [INFO] Mounting shared directory
2025-02-22 10:58:30 (16676): Guest Log: [INFO] Checking for init_data.xml
2025-02-22 10:58:37 (16676): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-22 10:58:37 (16676): Guest Log: [INFO] Detected branch: prod
2025-02-22 10:58:37 (16676): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-22 10:58:37 (16676): Guest Log: Copying input files
2025-02-22 10:58:40 (16676): Guest Log: 00:00:10.003224 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 874 750 000ns (GuestNow=1 740 218 320 244 930 000 ns GuestLast=1 740 221 908 119 680 000 ns fSetTimeLastLoop=true )
2025-02-22 10:58:40 (16676): Guest Log: Copied input files into RunAtlas.
2025-02-22 10:58:40 (16676): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-22 10:58:40 (16676): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-22 10:58:40 (16676): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-22 10:58:40 (16676): Guest Log: Further information can be found at the LHC@home message board.
2025-02-22 10:58:46 (16676): VM state change detected. (old = 'running', new = 'paused')
2025-02-22 10:59:06 (16676): VM state change detected. (old = 'paused', new = 'running')
2025-02-22 10:59:10 (16676): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-22 10:59:10 (16676): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-22 10:59:10 (16676): Guest Log: 2.6.3.0 1655 0 32020 142934 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-22 10:59:11 (16676): Guest Log: copied the webapp to /var/www
2025-02-22 10:59:11 (16676): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-22 10:59:11 (16676): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-22 10:59:11 (16676): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-22 10:59:11 (16676): Guest Log:  *** Starting ATLAS job. (PandaID=6522371039 taskID=43205075) ***
2025-02-22 11:00:26 (16676): VM state change detected. (old = 'running', new = 'paused')
2025-02-22 11:00:46 (16676): VM state change detected. (old = 'paused', new = 'running')
2025-02-22 11:13:32 (16676): Guest Log:  *** Job finished ***
2025-02-22 11:13:32 (16676): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:40,311 | INFO     | [data] copytool_out thread has finished
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:40,747 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:44,766 | INFO     | [data] queue_monitor thread has finished
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:46,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140465098536768)>', '<ExcThread(monitor, started 140464137164544)>']
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:47,013 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:47,013 | INFO     | [monitor] control thread has ended
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,246 | INFO     | all workflow threads have been joined
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,246 | INFO     | end of generic workflow (traces error code: 0)
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,247 | INFO     | traces error code: 0
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,247 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,318 [wrapper] ==== pilot stdout END ====
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,322 [wrapper] ==== wrapper stdout RESUME ====
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,326 [wrapper] pilotpid: 6017
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,330 [wrapper] Pilot exit status: 0
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,596 [wrapper] pandaids: 6522371039
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,626 [wrapper] cleanup supervisor_pilot  6023 6018
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,631 [wrapper] Test setup, not cleaning
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,641 [wrapper] apfmon messages muted
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,645 [wrapper] ==== wrapper stdout END ====
2025-02-22 11:13:32 (16676): Guest Log: 2025-02-22 10:12:51,650 [wrapper] ==== wrapper stderr END ====
2025-02-22 11:13:32 (16676): Guest Log:  *** Error codes and diagnostics ***
2025-02-22 11:13:32 (16676): Guest Log:     "exeErrorCode": 65,
2025-02-22 11:13:32 (16676): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1)",
2025-02-22 11:13:32 (16676): Guest Log:     "pilotErrorCode": 1305,
2025-02-22 11:13:32 (16676): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2025-02-22 10:10:21,216 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1)",
2025-02-22 11:13:32 (16676): Guest Log:  *** Listing of results directory ***
2025-02-22 11:13:32 (16676): Guest Log: total 3928
2025-02-22 11:13:32 (16676): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Feb 21 15:12 pilot3.tar.gz
2025-02-22 11:13:32 (16676): Guest Log: -rw-r--r--. 1 atlas atlas    5118 Feb 21 15:34 queuedata.json
2025-02-22 11:13:32 (16676): Guest Log: -rwx------. 1 atlas atlas   35865 Feb 21 15:35 runpilot2-wrapper.sh
2025-02-22 11:13:32 (16676): Guest Log: -rwxr-xr-x. 1 atlas atlas    8823 Feb 22 09:58 init_data.xml
2025-02-22 11:13:32 (16676): Guest Log: -rwxr-xr-x. 1 atlas atlas  503555 Feb 22 09:58 input.tar.gz
2025-02-22 11:13:32 (16676): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Feb 22 09:58 start_atlas.sh
2025-02-22 11:13:32 (16676): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Feb 22 09:58 EVNT.43092757._000136.pool.root.1 -> /data/./ATLAS.root_0
2025-02-22 11:13:32 (16676): Guest Log: -rw-r--r--. 1 atlas atlas    2549 Feb 22 09:58 pandaJob.out
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas     424 Feb 22 09:58 setup.sh.local
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas  988034 Feb 22 10:00 agis_schedconf.cvmfs.json
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas 1582569 Feb 22 10:00 agis_ddmendpoints.agis.ALL.json
2025-02-22 11:13:32 (16676): Guest Log: drwx------. 4 atlas atlas    4096 Feb 22 10:00 pilot3
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas    1002 Feb 22 10:10 memory_monitor_summary.json
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas   24433 Feb 22 10:10 log.43205075._057496.job.log.tgz.1
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas      95 Feb 22 10:12 pilot_heartbeat.json
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas    8465 Feb 22 10:12 heartbeat.json
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas    4461 Feb 22 10:12 pilotlog.txt
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas  116724 Feb 22 10:12 log.43205075._057496.job.log.1
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas     188 Feb 22 10:12 output.list
2025-02-22 11:13:32 (16676): Guest Log: -rw-r--r--. 1 atlas atlas     620 Feb 22 10:12 runtime_log
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas  163840 Feb 22 10:12 result.tar.gz
2025-02-22 11:13:32 (16676): Guest Log: -rw-r--r--. 1 atlas atlas   10811 Feb 22 10:12 runtime_log.err
2025-02-22 11:13:32 (16676): Guest Log: -rw-------. 1 atlas atlas     652 Feb 22 10:12 A1kLDm7Ek56nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmBYsKDmJAYzEo.diag
2025-02-22 11:13:32 (16676): Guest Log: Looking for outputfile HITS.43205075._057496.pool.root.1
2025-02-22 11:13:32 (16676): Guest Log: No HITS file was produced
2025-02-22 11:13:32 (16676): Guest Log: Successfully finished the ATLAS job!
2025-02-22 11:13:32 (16676): Guest Log: Copying the results back to the shared directory!
2025-02-22 11:13:32 (16676): Guest Log:  *** Contents of shared directory: ***
2025-02-22 11:13:32 (16676): Guest Log: total 339112
2025-02-22 11:13:32 (16676): Guest Log: -rwxrwxrwx. 1 root root 346546315 Feb 22 09:57 ATLAS.root_0
2025-02-22 11:13:32 (16676): Guest Log: -rwxrwxrwx. 1 root root      8823 Feb 22 09:57 init_data.xml
2025-02-22 11:13:32 (16676): Guest Log: -rwxrwxrwx. 1 root root    503555 Feb 21 19:38 input.tar.gz
2025-02-22 11:13:32 (16676): Guest Log: -rwxrwxrwx. 1 root root    163840 Feb 22  2025 result.tar.gz
2025-02-22 11:13:32 (16676): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 21 19:38 start_atlas.sh
2025-02-22 11:13:32 (16676): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-22 11:13:32 (16676): VM Completion File Detected.
2025-02-22 11:13:32 (16676): Powering off VM.
2025-02-22 11:13:34 (16676): Successfully stopped VM.
2025-02-22 11:13:34 (16676): Deregistering VM. (boinc_dd049bfa85b6f720, slot#8)
2025-02-22 11:13:34 (16676): Removing network bandwidth throttle group from VM.
2025-02-22 11:13:34 (16676): Removing VM from VirtualBox.
11:13:40 (16676): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN