Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-21 22:40:07 (7472): Detected: vboxwrapper 26206
2025-02-21 22:40:07 (7472): Detected: BOINC client v8.0.2
2025-02-21 22:40:08 (7472): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-21 22:40:08 (7472): Successfully copied 'init_data.xml' to the shared directory.
2025-02-21 22:40:09 (7472): Create VM. (boinc_b65e529615da29f6, slot#7)
2025-02-21 22:40:09 (7472): Setting Memory Size for VM. (4200MB)
2025-02-21 22:40:09 (7472): Setting CPU Count for VM. (2)
2025-02-21 22:40:10 (7472): Setting Chipset Options for VM.
2025-02-21 22:40:10 (7472): Setting Graphics Controller Options for VM.
2025-02-21 22:40:10 (7472): Setting Boot Options for VM.
2025-02-21 22:40:10 (7472): Setting Network Configuration for NAT.
2025-02-21 22:40:11 (7472): Enabling VM Network Access.
2025-02-21 22:40:11 (7472): Disabling USB Support for VM.
2025-02-21 22:40:11 (7472): Disabling COM Port Support for VM.
2025-02-21 22:40:11 (7472): Disabling LPT Port Support for VM.
2025-02-21 22:40:12 (7472): Disabling Audio Support for VM.
2025-02-21 22:40:12 (7472): Disabling Clipboard Support for VM.
2025-02-21 22:40:12 (7472): Disabling Drag and Drop Support for VM.
2025-02-21 22:40:12 (7472): Adding storage controller(s) to VM.
2025-02-21 22:40:13 (7472): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-21 22:40:13 (7472): Adding VirtualBox Guest Additions to VM.
2025-02-21 22:40:14 (7472): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-21 22:40:14 (7472): forwarding host port 50483 to guest port 80
2025-02-21 22:40:14 (7472): Enabling remote desktop for VM.
2025-02-21 22:40:14 (7472): Required extension pack not installed, remote desktop not enabled.
2025-02-21 22:40:14 (7472): Enabling shared directory for VM.
2025-02-21 22:40:15 (7472): Starting VM using VBoxManage interface. (boinc_b65e529615da29f6, slot#7)
2025-02-21 22:40:22 (7472): Successfully started VM. (PID = '12260')
2025-02-21 22:40:22 (7472): Reporting VM Process ID to BOINC.
2025-02-21 22:40:22 (7472): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-21 22:40:22 (7472): Guest Log: CPUID EDX: 0x178bfbff
2025-02-21 22:40:22 (7472): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-21 22:40:22 (7472): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-21 22:40:22 (7472): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-21 22:40:22 (7472): Detected: Web Application Enabled (http://localhost:50483)
2025-02-21 22:40:22 (7472): Preference change detected
2025-02-21 22:40:22 (7472): Setting CPU throttle for VM. (100%)
2025-02-21 22:40:22 (7472): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-21 22:40:24 (7472): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-21 22:40:24 (7472): Guest Log: BIOS: Booting from Hard Disk...
2025-02-21 22:40:26 (7472): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-21 22:40:26 (7472): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-21 22:40:26 (7472): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-21 22:40:31 (7472): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-21 22:40:31 (7472): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-21 22:40:37 (7472): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-21 22:40:37 (7472): Guest Log: 00:00:00.000087 main     Log opened 2025-02-21T22:40:34.784466000Z
2025-02-21 22:40:37 (7472): Guest Log: 00:00:00.000195 main     OS Product: Linux
2025-02-21 22:40:37 (7472): Guest Log: 00:00:00.000224 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-21 22:40:37 (7472): Guest Log: 00:00:00.000246 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-21 22:40:37 (7472): Guest Log: 00:00:00.000267 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-21 22:40:37 (7472): Guest Log: 00:00:00.000268 main     Process ID: 1259
2025-02-21 22:40:37 (7472): Guest Log: 00:00:00.000268 main     Package type: LINUX_64BITS_GENERIC
2025-02-21 22:40:37 (7472): Guest Log: 00:00:00.000835 main     5.2.32 r132073 started. Verbose level = 0
2025-02-21 22:40:37 (7472): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-21 22:40:37 (7472): Guest Log: [INFO] Mounting shared directory
2025-02-21 22:40:37 (7472): Guest Log: [INFO] Checking for init_data.xml
2025-02-21 22:40:46 (7472): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-21 22:40:46 (7472): Guest Log: [INFO] Detected branch: prod
2025-02-21 22:40:46 (7472): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-21 22:40:46 (7472): Guest Log: Copying input files
2025-02-21 22:40:47 (7472): Guest Log: 00:00:10.004653 timesync vgsvcTimeSyncWorker: Radical guest time change: -39 587 663 175 000ns (GuestNow=1 740 138 047 123 908 000 ns GuestLast=1 740 177 634 787 083 000 ns fSetTimeLastLoop=true )
2025-02-21 22:40:47 (7472): Guest Log: Copied input files into RunAtlas.
2025-02-21 22:40:47 (7472): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-21 22:40:47 (7472): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-21 22:40:47 (7472): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-21 22:40:47 (7472): Guest Log: Further information can be found at the LHC@home message board.
2025-02-21 22:40:58 (7472): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-21 22:40:58 (7472): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-21 22:40:58 (7472): Guest Log: 2.6.3.0 1537 0 32080 142901 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-21 22:40:59 (7472): Guest Log: copied the webapp to /var/www
2025-02-21 22:40:59 (7472): Guest Log: ATHENA_PROC_NUMBER=2
2025-02-21 22:40:59 (7472): Guest Log: ATHENA_CORE_NUMBER=2
2025-02-21 22:41:00 (7472): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-21 22:41:00 (7472): Guest Log:  *** Starting ATLAS job. (PandaID=6521944130 taskID=43205094) ***
2025-02-22 00:21:17 (7472): Status Report: Elapsed Time: '6000.592611'
2025-02-22 00:21:17 (7472): Status Report: CPU Time: '9116.109375'
2025-02-22 02:08:18 (7472): Status Report: Elapsed Time: '12001.281080'
2025-02-22 02:08:18 (7472): Status Report: CPU Time: '21794.062500'
2025-02-22 04:03:23 (7472): Status Report: Elapsed Time: '18001.956203'
2025-02-22 04:03:23 (7472): Status Report: CPU Time: '35475.781250'
2025-02-22 06:01:31 (7472): Status Report: Elapsed Time: '24002.193628'
2025-02-22 06:01:31 (7472): Status Report: CPU Time: '49501.562500'
2025-02-22 07:59:07 (7472): Status Report: Elapsed Time: '30003.137636'
2025-02-22 07:59:07 (7472): Status Report: CPU Time: '63471.296875'
2025-02-22 09:54:17 (7472): Status Report: Elapsed Time: '36003.331543'
2025-02-22 09:54:17 (7472): Status Report: CPU Time: '77148.531250'
2025-02-22 11:41:59 (7472): Status Report: Elapsed Time: '42004.290180'
2025-02-22 11:41:59 (7472): Status Report: CPU Time: '89935.109375'
2025-02-22 13:21:51 (7472): Guest Log:  *** Job finished ***
2025-02-22 13:21:51 (7472): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:23,035 | INFO     | [data] copytool_out thread has finished
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:23,197 | INFO     | [payload] control thread has finished
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:26,086 | INFO     | [data] queue_monitor thread has finished
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:26,739 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140108656723776)>', '<ExcThread(monitor, started 140107998816000)>']
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:27,647 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:27,647 | INFO     | [monitor] control thread has ended
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:31,755 | INFO     | all workflow threads have been joined
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:31,755 | INFO     | end of generic workflow (traces error code: 0)
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:31,756 | INFO     | traces error code: 0
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:31,756 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:31,859 [wrapper] ==== pilot stdout END ====
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:31,863 [wrapper] ==== wrapper stdout RESUME ====
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:31,866 [wrapper] pilotpid: 5855
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:31,870 [wrapper] Pilot exit status: 0
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:32,401 [wrapper] pandaids: 6521944130
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:32,425 [wrapper] cleanup supervisor_pilot  8037 5856
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:32,429 [wrapper] Test setup, not cleaning
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:32,436 [wrapper] apfmon messages muted
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:32,439 [wrapper] ==== wrapper stdout END ====
2025-02-22 13:21:51 (7472): Guest Log: 2025-02-22 02:21:32,443 [wrapper] ==== wrapper stderr END ====
2025-02-22 13:21:51 (7472): Guest Log:  *** Error codes and diagnostics ***
2025-02-22 13:21:51 (7472): Guest Log:     "exeErrorCode": 0,
2025-02-22 13:21:51 (7472): Guest Log:     "exeErrorDiag": "",
2025-02-22 13:21:51 (7472): Guest Log:     "pilotErrorCode": 0,
2025-02-22 13:21:51 (7472): Guest Log:     "pilotErrorDiag": "",
2025-02-22 13:21:51 (7472): Guest Log:  *** Listing of results directory ***
2025-02-22 13:21:51 (7472): Guest Log: total 337284
2025-02-22 13:21:51 (7472): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 21 08:10 pilot3.tar.gz
2025-02-22 13:21:51 (7472): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 21 08:17 queuedata.json
2025-02-22 13:21:51 (7472): Guest Log: -rwx------. 1 atlas atlas     35865 Feb 21 08:17 runpilot2-wrapper.sh
2025-02-22 13:21:51 (7472): Guest Log: -rwxr-xr-x. 1 atlas atlas      9003 Feb 21 11:40 init_data.xml
2025-02-22 13:21:51 (7472): Guest Log: -rwxr-xr-x. 1 atlas atlas    503552 Feb 21 11:40 input.tar.gz
2025-02-22 13:21:51 (7472): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 21 11:40 start_atlas.sh
2025-02-22 13:21:51 (7472): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 21 11:40 EVNT.43092757._001982.pool.root.1 -> /data/./ATLAS.root_0
2025-02-22 13:21:51 (7472): Guest Log: -rw-r--r--. 1 atlas atlas      2547 Feb 21 11:41 pandaJob.out
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas       424 Feb 21 11:41 setup.sh.local
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas    991368 Feb 21 11:43 agis_schedconf.cvmfs.json
2025-02-22 13:21:51 (7472): Guest Log: drwx------. 4 atlas atlas      4096 Feb 21 11:43 pilot3
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas 325762261 Feb 22 02:20 HITS.43205094._031308.pool.root.1
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas        95 Feb 22 02:20 pilot_heartbeat.json
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas      1021 Feb 22 02:20 memory_monitor_summary.json
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas   1582569 Feb 22 02:21 agis_ddmendpoints.agis.ALL.json
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas    755721 Feb 22 02:21 log.43205094._031308.job.log.tgz.1
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas      7705 Feb 22 02:21 heartbeat.json
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas      4398 Feb 22 02:21 pilotlog.txt
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas   7179190 Feb 22 02:21 log.43205094._031308.job.log.1
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas       357 Feb 22 02:21 output.list
2025-02-22 13:21:51 (7472): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 22 02:21 runtime_log
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas   7956480 Feb 22 02:21 result.tar.gz
2025-02-22 13:21:51 (7472): Guest Log: -rw-r--r--. 1 atlas atlas     10966 Feb 22 02:21 runtime_log.err
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas       669 Feb 22 02:21 4iWKDmXPd56nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmsurKDmokKStm.diag
2025-02-22 13:21:51 (7472): Guest Log: Looking for outputfile HITS.43205094._031308.pool.root.1
2025-02-22 13:21:51 (7472): Guest Log: HITS file was successfully produced
2025-02-22 13:21:51 (7472): Guest Log: -rw-------. 1 atlas atlas 325762261 Feb 22 02:20 /home/atlas/RunAtlas/HITS.43205094._031308.pool.root.1
2025-02-22 13:21:52 (7472): Guest Log: Successfully finished the ATLAS job!
2025-02-22 13:21:52 (7472): Guest Log: Copying the results back to the shared directory!
2025-02-22 13:21:52 (7472): Guest Log:  *** Contents of shared directory: ***
2025-02-22 13:21:52 (7472): Guest Log: total 662896
2025-02-22 13:21:52 (7472): Guest Log: -rwxrwxrwx. 1 root root 344544821 Feb 21 11:40 ATLAS.root_0
2025-02-22 13:21:52 (7472): Guest Log: -rwxrwxrwx. 1 root root 325762261 Feb 22  2025 HITS.pool.root.1
2025-02-22 13:21:52 (7472): Guest Log: -rwxrwxrwx. 1 root root      9003 Feb 21 11:40 init_data.xml
2025-02-22 13:21:52 (7472): Guest Log: -rwxrwxrwx. 1 root root    503552 Feb 21 11:25 input.tar.gz
2025-02-22 13:21:52 (7472): Guest Log: -rwxrwxrwx. 1 root root   7956480 Feb 22  2025 result.tar.gz
2025-02-22 13:21:52 (7472): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 21 11:25 start_atlas.sh
2025-02-22 13:21:52 (7472): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-22 13:21:52 (7472): VM Completion File Detected.
2025-02-22 13:21:52 (7472): Powering off VM.
2025-02-22 13:21:53 (7472): Successfully stopped VM.
2025-02-22 13:21:53 (7472): Deregistering VM. (boinc_b65e529615da29f6, slot#7)
2025-02-22 13:21:53 (7472): Removing network bandwidth throttle group from VM.
2025-02-22 13:21:53 (7472): Removing VM from VirtualBox.
13:21:58 (7472): called boinc_finish(0)

</stderr_txt>
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