Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
16:54:22 (619090): wrapper (7.7.26015): starting
16:54:22 (619090): wrapper: running run_atlas (--nthreads 4)
[2025-02-23 16:54:22] Arguments: --nthreads 4
[2025-02-23 16:54:22] Threads: 4
[2025-02-23 16:54:22] Checking for CVMFS
[2025-02-23 16:54:22] No cvmfs_config command found, will try listing directly
[2025-02-23 16:54:22] CVMFS is ok
[2025-02-23 16:54:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-23 16:54:22] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-23 16:54:22] Further information can be found at the LHC@home message board.
[2025-02-23 16:54:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-23 16:54:22] Checking for apptainer binary...
[2025-02-23 16:54:22] which: no apptainer in ((null))
[2025-02-23 16:54:22] apptainer is not installed, using version from CVMFS
[2025-02-23 16:54:22] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-23 16:54:22] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot24/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut30.grid.cesnet.cz
[2025-02-23 16:54:22] apptainer works
[2025-02-23 16:54:22] Set ATHENA_PROC_NUMBER=4
[2025-02-23 16:54:22] Set ATHENA_CORE_NUMBER=4
[2025-02-23 16:54:22] Starting ATLAS job with PandaID=6521610033
[2025-02-23 16:54:22] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot24/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-24 00:01:52]  *** The last 200 lines of the pilot log: ***
[2025-02-24 00:01:52] 2025-02-23 23:01:32,176 | INFO     | intersect: -11934377879.440453
[2025-02-24 00:01:52] 2025-02-23 23:01:32,177 | INFO     | chi2: 3.135204683739089
[2025-02-24 00:01:52] 2025-02-23 23:01:32,178 | INFO     | current chi2=3.135204683739089 (change=19.926908393412386 %)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,178 | INFO     | right removable region: 414
[2025-02-24 00:01:52] 2025-02-23 23:01:32,178 | INFO     | model: linear, x: [1740326402.0, 1740326463.0, 1740326524.0, 1740326585.0, 1740326646.0, 1740326707.0, 1740326768.0, 1740326829.0, 1740326890.0, 1740326951.0, 1740
[2025-02-24 00:01:52] 2025-02-23 23:01:32,179 | INFO     | sum of square deviations: 22162573680.0
[2025-02-24 00:01:52] 2025-02-23 23:01:32,184 | INFO     | sum of deviations: 35703357523.00001
[2025-02-24 00:01:52] 2025-02-23 23:01:32,185 | INFO     | mean x: 1740339029.0
[2025-02-24 00:01:52] 2025-02-23 23:01:32,185 | INFO     | mean y: 2372861.01686747
[2025-02-24 00:01:52] 2025-02-23 23:01:32,185 | INFO     | -- intersect: -2801270229.392372
[2025-02-24 00:01:52] 2025-02-23 23:01:32,185 | INFO     | intersect: -2801270229.392372
[2025-02-24 00:01:52] 2025-02-23 23:01:32,186 | INFO     | chi2: 1.8442624848205045
[2025-02-24 00:01:52] 2025-02-23 23:01:32,186 | INFO     | current chi2=1.8442624848205045 (change=52.897557323911315 %)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,187 | INFO     | model: linear, x: [1740326707.0, 1740326768.0, 1740326829.0, 1740326890.0, 1740326951.0, 1740327012.0, 1740327073.0, 1740327134.0, 1740327195.0, 1740327256.0, 1740
[2025-02-24 00:01:52] 2025-02-23 23:01:32,188 | INFO     | sum of square deviations: 21371126282.5
[2025-02-24 00:01:52] 2025-02-23 23:01:32,193 | INFO     | sum of deviations: -25540811233.5
[2025-02-24 00:01:52] 2025-02-23 23:01:32,193 | INFO     | mean x: 1740339181.5
[2025-02-24 00:01:52] 2025-02-23 23:01:32,193 | INFO     | mean y: 2384661.5
[2025-02-24 00:01:52] 2025-02-23 23:01:32,193 | INFO     | -- intersect: 2082278529.9552877
[2025-02-24 00:01:52] 2025-02-23 23:01:32,193 | INFO     | intersect: 2082278529.9552877
[2025-02-24 00:01:52] 2025-02-23 23:01:32,194 | INFO     | chi2: 1.0012069400239558
[2025-02-24 00:01:52] 2025-02-23 23:01:32,194 | INFO     | current chi2=1.0012069400239558 (change=45.712340392728876 %)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,195 | INFO     | model: linear, x: [1740327012.0, 1740327073.0, 1740327134.0, 1740327195.0, 1740327256.0, 1740327317.0, 1740327378.0, 1740327439.0, 1740327500.0, 1740327561.0, 1740
[2025-02-24 00:01:52] 2025-02-23 23:01:32,195 | INFO     | sum of square deviations: 20598749010.0
[2025-02-24 00:01:52] 2025-02-23 23:01:32,200 | INFO     | sum of deviations: -30717448835.000008
[2025-02-24 00:01:52] 2025-02-23 23:01:32,200 | INFO     | mean x: 1740339334.0
[2025-02-24 00:01:52] 2025-02-23 23:01:32,201 | INFO     | mean y: 2385662.3333333335
[2025-02-24 00:01:52] 2025-02-23 23:01:32,201 | INFO     | -- intersect: 2597629889.1419883
[2025-02-24 00:01:52] 2025-02-23 23:01:32,201 | INFO     | intersect: 2597629889.1419883
[2025-02-24 00:01:52] 2025-02-23 23:01:32,202 | INFO     | chi2: 0.9332102402391601
[2025-02-24 00:01:52] 2025-02-23 23:01:32,202 | INFO     | current chi2=0.9332102402391601 (change=6.791473077800357 %)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,202 | INFO     | left removable region: 30
[2025-02-24 00:01:52] 2025-02-23 23:01:32,202 | INFO     | model: linear, x: [1740327927.0, 1740327988.0, 1740328049.0, 1740328110.0, 1740328171.0, 1740328232.0, 1740328293.0, 1740328354.0, 1740328415.0, 1740328476.0, 1740
[2025-02-24 00:01:52] 2025-02-23 23:01:32,203 | INFO     | sum of square deviations: 17557761760.0
[2025-02-24 00:01:52] 2025-02-23 23:01:32,207 | INFO     | sum of deviations: 17744370763.999996
[2025-02-24 00:01:52] 2025-02-23 23:01:32,208 | INFO     | mean x: 1740339608.5
[2025-02-24 00:01:52] 2025-02-23 23:01:32,208 | INFO     | mean y: 2386318.5572916665
[2025-02-24 00:01:52] 2025-02-23 23:01:32,208 | INFO     | -- intersect: -1756450126.0088978
[2025-02-24 00:01:52] 2025-02-23 23:01:32,208 | INFO     | intersect: -1756450126.0088978
[2025-02-24 00:01:52] 2025-02-23 23:01:32,209 | INFO     | chi2: 0.005232353264525527
[2025-02-24 00:01:52] 2025-02-23 23:01:32,209 | INFO     | -- intersect: -1756450126.0088978
[2025-02-24 00:01:52] 2025-02-23 23:01:32,209 | INFO     | current memory leak: 1.01 B/s (using 384 data points, chi2=0.01)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,211 | INFO     | ..............................
[2025-02-24 00:01:52] 2025-02-23 23:01:32,211 | INFO     | . Timing measurements:
[2025-02-24 00:01:52] 2025-02-23 23:01:32,211 | INFO     | . get job = 0 s
[2025-02-24 00:01:52] 2025-02-23 23:01:32,211 | INFO     | . initial setup = 1 s
[2025-02-24 00:01:52] 2025-02-23 23:01:32,211 | INFO     | . payload setup = 5 s
[2025-02-24 00:01:52] 2025-02-23 23:01:32,211 | INFO     | . stage-in = 0 s
[2025-02-24 00:01:52] 2025-02-23 23:01:32,212 | INFO     | . payload execution = 25589 s
[2025-02-24 00:01:52] 2025-02-23 23:01:32,212 | INFO     | . stage-out = 1 s
[2025-02-24 00:01:52] 2025-02-23 23:01:32,212 | INFO     | . log creation = 0 s
[2025-02-24 00:01:52] 2025-02-23 23:01:32,212 | INFO     | ..............................
[2025-02-24 00:01:52] 2025-02-23 23:01:32,300 | WARNING  | process 629839 can no longer be monitored (due to stat problems) - aborting
[2025-02-24 00:01:52] 2025-02-23 23:01:32,301 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6521610033/memory_monitor_summary.json (trf name=prmon)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,340 | INFO     | using path: /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6521610033/memory_monitor_summary.json (trf name=prmon)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,348 | INFO     | 
[2025-02-24 00:01:52] 2025-02-23 23:01:32,349 | INFO     | job summary report
[2025-02-24 00:01:52] 2025-02-23 23:01:32,349 | INFO     | --------------------------------------------------
[2025-02-24 00:01:52] 2025-02-23 23:01:32,349 | INFO     | PanDA job id: 6521610033
[2025-02-24 00:01:52] 2025-02-23 23:01:32,349 | INFO     | task id: 43205075
[2025-02-24 00:01:52] 2025-02-23 23:01:32,349 | INFO     | errors: (none)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,349 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-24 00:01:52] 2025-02-23 23:01:32,350 | INFO     | pilot state: finished 
[2025-02-24 00:01:52] 2025-02-23 23:01:32,350 | INFO     | transexitcode: 0
[2025-02-24 00:01:52] 2025-02-23 23:01:32,350 | INFO     | exeerrorcode: 0
[2025-02-24 00:01:52] 2025-02-23 23:01:32,350 | INFO     | exeerrordiag: 
[2025-02-24 00:01:52] 2025-02-23 23:01:32,350 | INFO     | exitcode: 0
[2025-02-24 00:01:52] 2025-02-23 23:01:32,350 | INFO     | exitmsg: OK
[2025-02-24 00:01:52] 2025-02-23 23:01:32,350 | INFO     | cpuconsumptiontime: 97957 s
[2025-02-24 00:01:52] 2025-02-23 23:01:32,350 | INFO     | nevents: 400
[2025-02-24 00:01:52] 2025-02-23 23:01:32,351 | INFO     | neventsw: 0
[2025-02-24 00:01:52] 2025-02-23 23:01:32,351 | INFO     | pid: 629839
[2025-02-24 00:01:52] 2025-02-23 23:01:32,351 | INFO     | pgrp: 629839
[2025-02-24 00:01:52] 2025-02-23 23:01:32,351 | INFO     | corecount: 4
[2025-02-24 00:01:52] 2025-02-23 23:01:32,351 | INFO     | event service: False
[2025-02-24 00:01:52] 2025-02-23 23:01:32,351 | INFO     | sizes: {0: 2383330, 4: 2383536, 11: 2383564, 25598: 2419321, 25601: 2428340, 25605: 2428454}
[2025-02-24 00:01:52] 2025-02-23 23:01:32,351 | INFO     | --------------------------------------------------
[2025-02-24 00:01:52] 2025-02-23 23:01:32,351 | INFO     | 
[2025-02-24 00:01:52] 2025-02-23 23:01:32,352 | INFO     | executing command: ls -lF /scratch/boinc/var/slot24/slots/0
[2025-02-24 00:01:52] 2025-02-23 23:01:32,360 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2723048 B
[2025-02-24 00:01:52] 2025-02-23 23:01:32,361 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 17008 B
[2025-02-24 00:01:52] 2025-02-23 23:01:32,361 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2025-02-24 00:01:52] 2025-02-23 23:01:32,373 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,374 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,374 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,374 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,374 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,374 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,374 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,375 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,375 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,375 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,375 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,375 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,375 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,375 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,376 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,376 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,376 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,376 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,376 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,376 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-24 00:01:52] 2025-02-23 23:01:32,376 | INFO     | job 6521610033 has completed (purged errors)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,377 | INFO     | overall cleanup function is called
[2025-02-24 00:01:52] 2025-02-23 23:01:32,377 | INFO     | sufficient remaining disk space (1647968256000 B)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,378 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,380 | INFO     | size of work directory /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6521610033: 3050775 B (within 2537553920 B limit)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,380 | INFO     | pfn file=/scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6521610033/HITS.43205075._056473.pool.root.1 does not exist (skip from workdir size calculation)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,381 | INFO     | total size of present files: 0 B (workdir size: 3050775 B)
[2025-02-24 00:01:52] 2025-02-23 23:01:32,381 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot24/slots/0/PanDA_Pilot-6521610033/HITS.43205075._056473.pool.root.1 since it does not exist
[2025-02-24 00:01:52] 2025-02-23 23:01:32,466 | INFO     | PID=623069 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-02-24 00:01:52] 2025-02-23 23:01:32,466 | INFO     | .. there are 7 such processes running
[2025-02-24 00:01:52] 2025-02-23 23:01:32,507 | INFO     | number of running child processes to parent process 629839: 1
[2025-02-24 00:01:52] 2025-02-23 23:01:32,507 | INFO     | maximum number of monitored processes: 6
[2025-02-24 00:01:52] 2025-02-23 23:01:32,507 | INFO     | aborting job monitoring since job object (job id=6521610033) has expired
[2025-02-24 00:01:52] 2025-02-23 23:01:33,394 | INFO     | --- collectZombieJob: --- 10, [629839]
[2025-02-24 00:01:52] 2025-02-23 23:01:33,394 | INFO     | zombie collector waiting for pid 629839
[2025-02-24 00:01:52] 2025-02-23 23:01:33,394 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-24 00:01:52] 2025-02-23 23:01:33,394 | INFO     | collected zombie processes
[2025-02-24 00:01:52] 2025-02-23 23:01:33,395 | INFO     | will attempt to kill all subprocesses of pid=629839
[2025-02-24 00:01:52] 2025-02-23 23:01:33,512 | INFO     | process IDs to be killed: [629839] (in reverse order)
[2025-02-24 00:01:52] 2025-02-23 23:01:33,603 | WARNING  | found no corresponding commands to process id(s)
[2025-02-24 00:01:52] 2025-02-23 23:01:33,603 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-24 00:01:52] 2025-02-23 23:01:33,613 | INFO     | did not find any defunct processes belonging to 629839
[2025-02-24 00:01:52] 2025-02-23 23:01:33,621 | INFO     | did not find any defunct processes belonging to 629839
[2025-02-24 00:01:52] 2025-02-23 23:01:33,622 | INFO     | ready for new job
[2025-02-24 00:01:52] 2025-02-23 23:01:33,622 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-24 00:01:52] 2025-02-23 23:01:33,625 | INFO     | **************************************
[2025-02-24 00:01:52] 2025-02-23 23:01:33,625 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-24 00:01:52] 2025-02-23 23:01:33,625 | INFO     | **************************************
[2025-02-24 00:01:52] 2025-02-23 23:01:33,625 | INFO     | 
[2025-02-24 00:01:52] 2025-02-23 23:01:33,628 | INFO     | architecture information:
[2025-02-24 00:01:52] 2025-02-23 23:01:33,628 | INFO     | executing command: cat /etc/os-release
[2025-02-24 00:01:52] 2025-02-23 23:01:33,641 | INFO     | cat /etc/os-release:
[2025-02-24 00:01:52] NAME="CentOS Linux"
[2025-02-24 00:01:52] VERSION="7 (Core)"
[2025-02-24 00:01:52] ID="centos"
[2025-02-24 00:01:52] ID_LIKE="rhel fedora"
[2025-02-24 00:01:52] VERSION_ID="7"
[2025-02-24 00:01:52] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-24 00:01:52] ANSI_COLOR="0;31"
[2025-02-24 00:01:52] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-24 00:01:52] HOME_URL="https://www.centos.org/"
[2025-02-24 00:01:52] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-24 00:01:52] 
[2025-02-24 00:01:52] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-24 00:01:52] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-24 00:01:52] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-24 00:01:52] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-24 00:01:52] 
[2025-02-24 00:01:52] 2025-02-23 23:01:33,641 | INFO     | **************************************
[2025-02-24 00:01:52] 2025-02-23 23:01:34,144 | INFO     | executing command: df -mP /scratch/boinc/var/slot24/slots/0
[2025-02-24 00:01:52] 2025-02-23 23:01:34,159 | INFO     | sufficient remaining disk space (1647974547456 B)
[2025-02-24 00:01:52] 2025-02-23 23:01:34,160 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-24 00:01:52] 2025-02-23 23:01:34,160 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-24 00:01:52] 2025-02-23 23:01:34,160 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-24 00:01:52] 2025-02-23 23:01:34,161 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-24 00:01:52] 2025-02-23 23:01:34,161 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-24 00:01:52] 2025-02-23 23:01:34,161 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-24 00:01:52] 2025-02-23 23:01:34,161 | INFO     | aborting loop
[2025-02-24 00:01:52] 2025-02-23 23:01:34,472 | INFO     | found 0 job(s) in 20 queues
[2025-02-24 00:01:52] 2025-02-23 23:01:34,472 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-24 00:01:52] 2025-02-23 23:01:34,472 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-24 00:01:52] 2025-02-23 23:01:34,521 | INFO     | all data control threads have been joined
[2025-02-24 00:01:52] 2025-02-23 23:01:34,796 | INFO     | all payload control threads have been joined
[2025-02-24 00:01:52] 2025-02-23 23:01:35,165 | INFO     | [job] retrieve thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:35,167 | INFO     | [job] queue monitor thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:35,167 | INFO     | [job] job monitor thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:35,190 | INFO     | [payload] validate_pre thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:35,263 | INFO     | [payload] execute_payloads thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:35,318 | INFO     | all job control threads have been joined
[2025-02-24 00:01:52] 2025-02-23 23:01:35,527 | INFO     | [data] control thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:35,789 | INFO     | [job] validate thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:35,801 | INFO     | [payload] control thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:35,901 | INFO     | [payload] validate_post thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:35,915 | INFO     | [data] copytool_in thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:36,089 | INFO     | [job] create_data_payload thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:36,166 | INFO     | [data] copytool_out thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:36,323 | INFO     | [job] control thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:36,602 | INFO     | [payload] failed_post thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:38,162 | INFO     | [data] queue_monitor thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:44,608 | INFO     | job.realtimelogging is not enabled
[2025-02-24 00:01:52] 2025-02-23 23:01:45,613 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-24 00:01:52] 2025-02-23 23:01:47,477 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22865661413184)>', '<ExcThread(monitor, started 22865428580096)>']
[2025-02-24 00:01:52] 2025-02-23 23:01:47,518 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-24 00:01:52] 2025-02-23 23:01:47,518 | INFO     | [monitor] control thread has ended
[2025-02-24 00:01:52] 2025-02-23 23:01:52,502 | INFO     | all workflow threads have been joined
[2025-02-24 00:01:52] 2025-02-23 23:01:52,502 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-24 00:01:52] 2025-02-23 23:01:52,502 | INFO     | traces error code: 0
[2025-02-24 00:01:52] 2025-02-23 23:01:52,502 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-24 00:01:52] 2025-02-23 23:01:52,619 [wrapper] ==== pilot stdout END ====
[2025-02-24 00:01:52] 2025-02-23 23:01:52,621 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-24 00:01:52] 2025-02-23 23:01:52,623 [wrapper] pilotpid: 623069
[2025-02-24 00:01:52] 2025-02-23 23:01:52,625 [wrapper] Pilot exit status: 0
[2025-02-24 00:01:52] 2025-02-23 23:01:52,634 [wrapper] pandaids: 6521610033
[2025-02-24 00:01:52] 2025-02-23 23:01:52,680 [wrapper] cleanup supervisor_pilot 1184294 623070
[2025-02-24 00:01:52] 2025-02-23 23:01:52,682 [wrapper] Test setup, not cleaning
[2025-02-24 00:01:52] 2025-02-23 23:01:52,687 [wrapper] apfmon messages muted
[2025-02-24 00:01:52] 2025-02-23 23:01:52,689 [wrapper] ==== wrapper stdout END ====
[2025-02-24 00:01:52] 2025-02-23 23:01:52,691 [wrapper] ==== wrapper stderr END ====
[2025-02-24 00:01:52]  *** Error codes and diagnostics ***
[2025-02-24 00:01:52]     "exeErrorCode": 0,
[2025-02-24 00:01:52]     "exeErrorDiag": "",
[2025-02-24 00:01:52]     "pilotErrorCode": 0,
[2025-02-24 00:01:52]     "pilotErrorDiag": "",
[2025-02-24 00:01:52]  *** Listing of results directory ***
[2025-02-24 00:01:52] total 664680
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc    491065 Feb 21 02:21 pilot3.tar.gz
[2025-02-24 00:01:52] -rwx------ 1 boinc boinc     35865 Feb 21 02:36 runpilot2-wrapper.sh
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc      5118 Feb 21 02:36 queuedata.json
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc       100 Feb 23 16:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-24 00:01:52] -rwxr-xr-x 1 boinc boinc      7986 Feb 23 16:54 run_atlas
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc       105 Feb 23 16:54 job.xml
[2025-02-24 00:01:52] -rw-r--r-- 2 boinc boinc 343792460 Feb 23 16:54 EVNT.43092757._001092.pool.root.1
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc      6420 Feb 23 16:54 init_data.xml
[2025-02-24 00:01:52] drwxrwx--x 2 boinc boinc      4096 Feb 23 16:54 shared
[2025-02-24 00:01:52] -rw-r--r-- 2 boinc boinc    503554 Feb 23 16:54 input.tar.gz
[2025-02-24 00:01:52] -rw-r--r-- 2 boinc boinc     17569 Feb 23 16:54 start_atlas.sh
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc         0 Feb 23 16:54 boinc_lockfile
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc      2556 Feb 23 16:54 pandaJob.out
[2025-02-24 00:01:52] -rw------- 1 boinc boinc       424 Feb 23 16:54 setup.sh.local
[2025-02-24 00:01:52] -rw------- 1 boinc boinc    987744 Feb 23 16:54 agis_schedconf.cvmfs.json
[2025-02-24 00:01:52] drwx------ 4 boinc boinc      4096 Feb 23 16:54 pilot3
[2025-02-24 00:01:52] -rw------- 1 boinc boinc 325595451 Feb 24 00:00 HITS.43205075._056473.pool.root.1
[2025-02-24 00:01:52] -rw------- 1 boinc boinc        95 Feb 24 00:00 pilot_heartbeat.json
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc       531 Feb 24 00:01 boinc_task_state.xml
[2025-02-24 00:01:52] -rw------- 1 boinc boinc      1038 Feb 24 00:01 memory_monitor_summary.json
[2025-02-24 00:01:52] -rw------- 1 boinc boinc   1582569 Feb 24 00:01 agis_ddmendpoints.agis.ALL.json
[2025-02-24 00:01:52] -rw------- 1 boinc boinc    505603 Feb 24 00:01 log.43205075._056473.job.log.tgz.1
[2025-02-24 00:01:52] -rw------- 1 boinc boinc      7747 Feb 24 00:01 heartbeat.json
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc        28 Feb 24 00:01 wrapper_checkpoint.txt
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc      8192 Feb 24 00:01 boinc_mmap_file
[2025-02-24 00:01:52] -rw------- 1 boinc boinc      4298 Feb 24 00:01 pilotlog.txt
[2025-02-24 00:01:52] -rw------- 1 boinc boinc   3214290 Feb 24 00:01 log.43205075._056473.job.log.1
[2025-02-24 00:01:52] -rw------- 1 boinc boinc       357 Feb 24 00:01 output.list
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc       620 Feb 24 00:01 runtime_log
[2025-02-24 00:01:52] -rw------- 1 boinc boinc   3737600 Feb 24 00:01 result.tar.gz
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc     11424 Feb 24 00:01 runtime_log.err
[2025-02-24 00:01:52] -rw------- 1 boinc boinc       665 Feb 24 00:01 iPOKDmF9W56n9Rq4apOajLDm4fhM0noT9bVoFjIUDmMicKDmoNLRVm.diag
[2025-02-24 00:01:52] -rw-r--r-- 1 boinc boinc     21973 Feb 24 00:01 stderr.txt
[2025-02-24 00:01:52] HITS file was successfully produced:
[2025-02-24 00:01:52] -rw------- 1 boinc boinc 325595451 Feb 24 00:00 shared/HITS.pool.root.1
[2025-02-24 00:01:52]  *** Contents of shared directory: ***
[2025-02-24 00:01:52] total 657872
[2025-02-24 00:01:52] -rw-r--r-- 2 boinc boinc 343792460 Feb 23 16:54 ATLAS.root_0
[2025-02-24 00:01:52] -rw-r--r-- 2 boinc boinc    503554 Feb 23 16:54 input.tar.gz
[2025-02-24 00:01:52] -rw-r--r-- 2 boinc boinc     17569 Feb 23 16:54 start_atlas.sh
[2025-02-24 00:01:52] -rw------- 1 boinc boinc 325595451 Feb 24 00:00 HITS.pool.root.1
[2025-02-24 00:01:52] -rw------- 1 boinc boinc   3737600 Feb 24 00:01 result.tar.gz
00:01:54 (619090): run_atlas exited; CPU time 98112.484207
00:01:54 (619090): called boinc_finish(0)

</stderr_txt>
]]>

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