Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
12:53:37 (3847727): wrapper (7.7.26015): starting
12:53:37 (3847727): wrapper: running run_atlas (--nthreads 4)
[2025-02-23 12:53:37] Arguments: --nthreads 4
[2025-02-23 12:53:37] Threads: 4
[2025-02-23 12:53:37] Checking for CVMFS
[2025-02-23 12:53:37] No cvmfs_config command found, will try listing directly
[2025-02-23 12:53:37] CVMFS is ok
[2025-02-23 12:53:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-23 12:53:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-23 12:53:37] Further information can be found at the LHC@home message board.
[2025-02-23 12:53:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-23 12:53:37] Checking for apptainer binary...
[2025-02-23 12:53:37] which: no apptainer in ((null))
[2025-02-23 12:53:37] apptainer is not installed, using version from CVMFS
[2025-02-23 12:53:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-23 12:53:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot76/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut14.grid.cesnet.cz
[2025-02-23 12:53:37] apptainer works
[2025-02-23 12:53:37] Set ATHENA_PROC_NUMBER=4
[2025-02-23 12:53:37] Set ATHENA_CORE_NUMBER=4
[2025-02-23 12:53:37] Starting ATLAS job with PandaID=6520972817
[2025-02-23 12:53:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot76/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-23 18:48:27]  *** The last 200 lines of the pilot log: ***
[2025-02-23 18:48:27] 2025-02-23 17:46:56,550 | INFO     | fitting pss+swap vs Time
[2025-02-23 18:48:27] 2025-02-23 17:46:56,550 | INFO     | model: linear, x: [1740311663.0, 1740311724.0, 1740311785.0, 1740311846.0, 1740311907.0, 1740311968.0, 1740312029.0, 1740312090.0, 1740312151.0, 1740312212.0, 1740
[2025-02-23 18:48:27] 2025-02-23 17:46:56,551 | INFO     | sum of square deviations: 12955770358.0
[2025-02-23 18:48:27] 2025-02-23 17:46:56,553 | INFO     | sum of deviations: 158927802471.0
[2025-02-23 18:48:27] 2025-02-23 17:46:56,553 | INFO     | mean x: 1740322216.0
[2025-02-23 18:48:27] 2025-02-23 17:46:56,553 | INFO     | mean y: 2319841.172910663
[2025-02-23 18:48:27] 2025-02-23 17:46:56,553 | INFO     | -- intersect: -21346127818.641735
[2025-02-23 18:48:27] 2025-02-23 17:46:56,553 | INFO     | intersect: -21346127818.641735
[2025-02-23 18:48:27] 2025-02-23 17:46:56,554 | INFO     | chi2: 4.888722269484836
[2025-02-23 18:48:27] 2025-02-23 17:46:56,554 | INFO     | model: linear, x: [1740311663.0, 1740311724.0, 1740311785.0, 1740311846.0, 1740311907.0, 1740311968.0, 1740312029.0, 1740312090.0, 1740312151.0, 1740312212.0, 1740
[2025-02-23 18:48:27] 2025-02-23 17:46:56,556 | INFO     | sum of square deviations: 12403750705.5
[2025-02-23 18:48:27] 2025-02-23 17:46:56,558 | INFO     | sum of deviations: 178758421852.00003
[2025-02-23 18:48:27] 2025-02-23 17:46:56,558 | INFO     | mean x: 1740322063.5
[2025-02-23 18:48:27] 2025-02-23 17:46:56,558 | INFO     | mean y: 2325247.643274854
[2025-02-23 18:48:27] 2025-02-23 17:46:56,558 | INFO     | -- intersect: -25078574310.224426
[2025-02-23 18:48:27] 2025-02-23 17:46:56,558 | INFO     | intersect: -25078574310.224426
[2025-02-23 18:48:27] 2025-02-23 17:46:56,558 | INFO     | chi2: 4.094100097944765
[2025-02-23 18:48:27] 2025-02-23 17:46:56,558 | INFO     | current chi2=4.094100097944765 (change=16.254189289910435 %)
[2025-02-23 18:48:27] 2025-02-23 17:46:56,559 | INFO     | right removable region: 341
[2025-02-23 18:48:27] 2025-02-23 17:46:56,559 | INFO     | model: linear, x: [1740311968.0, 1740312029.0, 1740312090.0, 1740312151.0, 1740312212.0, 1740312273.0, 1740312334.0, 1740312395.0, 1740312456.0, 1740312517.0, 1740
[2025-02-23 18:48:27] 2025-02-23 17:46:56,559 | INFO     | sum of square deviations: 12403750705.5
[2025-02-23 18:48:27] 2025-02-23 17:46:56,561 | INFO     | sum of deviations: 75975399106.0
[2025-02-23 18:48:27] 2025-02-23 17:46:56,561 | INFO     | mean x: 1740322368.5
[2025-02-23 18:48:27] 2025-02-23 17:46:56,561 | INFO     | mean y: 2342718.5614035088
[2025-02-23 18:48:27] 2025-02-23 17:46:56,561 | INFO     | -- intersect: -10657472176.078306
[2025-02-23 18:48:27] 2025-02-23 17:46:56,561 | INFO     | intersect: -10657472176.078306
[2025-02-23 18:48:27] 2025-02-23 17:46:56,561 | INFO     | chi2: 2.386286700073709
[2025-02-23 18:48:27] 2025-02-23 17:46:56,561 | INFO     | current chi2=2.386286700073709 (change=51.18792664969345 %)
[2025-02-23 18:48:27] 2025-02-23 17:46:56,562 | INFO     | model: linear, x: [1740312273.0, 1740312334.0, 1740312395.0, 1740312456.0, 1740312517.0, 1740312578.0, 1740312639.0, 1740312700.0, 1740312761.0, 1740312822.0, 1740
[2025-02-23 18:48:27] 2025-02-23 17:46:56,562 | INFO     | sum of square deviations: 11867638328.0
[2025-02-23 18:48:27] 2025-02-23 17:46:56,564 | INFO     | sum of deviations: 9817783836.0
[2025-02-23 18:48:27] 2025-02-23 17:46:56,564 | INFO     | mean x: 1740322521.0
[2025-02-23 18:48:27] 2025-02-23 17:46:56,564 | INFO     | mean y: 2361537.8041543025
[2025-02-23 18:48:27] 2025-02-23 17:46:56,564 | INFO     | -- intersect: -1437361332.3972683
[2025-02-23 18:48:27] 2025-02-23 17:46:56,564 | INFO     | intersect: -1437361332.3972683
[2025-02-23 18:48:27] 2025-02-23 17:46:56,564 | INFO     | chi2: 0.9264754506026869
[2025-02-23 18:48:27] 2025-02-23 17:46:56,564 | INFO     | current chi2=0.9264754506026869 (change=61.17501511557394 %)
[2025-02-23 18:48:27] 2025-02-23 17:46:56,565 | INFO     | model: linear, x: [1740312578.0, 1740312639.0, 1740312700.0, 1740312761.0, 1740312822.0, 1740312883.0, 1740312944.0, 1740313005.0, 1740313066.0, 1740313127.0, 1740
[2025-02-23 18:48:27] 2025-02-23 17:46:56,566 | INFO     | sum of square deviations: 11347200663.0
[2025-02-23 18:48:27] 2025-02-23 17:46:56,568 | INFO     | sum of deviations: -5388572555.000004
[2025-02-23 18:48:27] 2025-02-23 17:46:56,569 | INFO     | mean x: 1740322673.5
[2025-02-23 18:48:27] 2025-02-23 17:46:56,569 | INFO     | mean y: 2365975.3674698793
[2025-02-23 18:48:27] 2025-02-23 17:46:56,569 | INFO     | -- intersect: 828812539.0424083
[2025-02-23 18:48:27] 2025-02-23 17:46:56,569 | INFO     | intersect: 828812539.0424083
[2025-02-23 18:48:27] 2025-02-23 17:46:56,569 | INFO     | chi2: 0.8254846760945495
[2025-02-23 18:48:27] 2025-02-23 17:46:56,569 | INFO     | current chi2=0.8254846760945495 (change=10.900534325269097 %)
[2025-02-23 18:48:27] 2025-02-23 17:46:56,569 | INFO     | left removable region: 30
[2025-02-23 18:48:27] 2025-02-23 17:46:56,569 | INFO     | model: linear, x: [1740313493.0, 1740313554.0, 1740313615.0, 1740313676.0, 1740313737.0, 1740313798.0, 1740313859.0, 1740313920.0, 1740313981.0, 1740314042.0, 1740
[2025-02-23 18:48:27] 2025-02-23 17:46:56,570 | INFO     | sum of square deviations: 9327281860.0
[2025-02-23 18:48:27] 2025-02-23 17:46:56,572 | INFO     | sum of deviations: 9735899083.0
[2025-02-23 18:48:27] 2025-02-23 17:46:56,572 | INFO     | mean x: 1740322948.0
[2025-02-23 18:48:27] 2025-02-23 17:46:56,572 | INFO     | mean y: 2374295.1800643085
[2025-02-23 18:48:27] 2025-02-23 17:46:56,572 | INFO     | -- intersect: -1814190149.625623
[2025-02-23 18:48:27] 2025-02-23 17:46:56,572 | INFO     | intersect: -1814190149.625623
[2025-02-23 18:48:27] 2025-02-23 17:46:56,572 | INFO     | chi2: 0.0018411285819034304
[2025-02-23 18:48:27] 2025-02-23 17:46:56,573 | INFO     | -- intersect: -1814190149.625623
[2025-02-23 18:48:27] 2025-02-23 17:46:56,573 | INFO     | current memory leak: 1.04 B/s (using 311 data points, chi2=0.00)
[2025-02-23 18:48:27] 2025-02-23 17:46:56,574 | INFO     | ..............................
[2025-02-23 18:48:27] 2025-02-23 17:46:56,574 | INFO     | . Timing measurements:
[2025-02-23 18:48:27] 2025-02-23 17:46:56,574 | INFO     | . get job = 0 s
[2025-02-23 18:48:27] 2025-02-23 17:46:56,574 | INFO     | . initial setup = 1 s
[2025-02-23 18:48:27] 2025-02-23 17:46:56,574 | INFO     | . payload setup = 8 s
[2025-02-23 18:48:27] 2025-02-23 17:46:56,574 | INFO     | . stage-in = 0 s
[2025-02-23 18:48:27] 2025-02-23 17:46:56,574 | INFO     | . payload execution = 21146 s
[2025-02-23 18:48:27] 2025-02-23 17:46:56,574 | INFO     | . stage-out = 1 s
[2025-02-23 18:48:27] 2025-02-23 17:46:56,574 | INFO     | . log creation = 0 s
[2025-02-23 18:48:27] 2025-02-23 17:46:56,575 | INFO     | ..............................
[2025-02-23 18:48:27] 2025-02-23 17:46:57,042 | INFO     | 
[2025-02-23 18:48:27] 2025-02-23 17:46:57,044 | INFO     | job summary report
[2025-02-23 18:48:27] 2025-02-23 17:46:57,044 | INFO     | --------------------------------------------------
[2025-02-23 18:48:27] 2025-02-23 17:46:57,045 | INFO     | PanDA job id: 6520972817
[2025-02-23 18:48:27] 2025-02-23 17:46:57,045 | INFO     | task id: 43205075
[2025-02-23 18:48:27] 2025-02-23 17:46:57,045 | INFO     | errors: (none)
[2025-02-23 18:48:27] 2025-02-23 17:46:57,045 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-23 18:48:27] 2025-02-23 17:46:57,045 | INFO     | pilot state: finished 
[2025-02-23 18:48:27] 2025-02-23 17:46:57,045 | INFO     | transexitcode: 0
[2025-02-23 18:48:27] 2025-02-23 17:46:57,045 | INFO     | exeerrorcode: 0
[2025-02-23 18:48:27] 2025-02-23 17:46:57,045 | INFO     | exeerrordiag: 
[2025-02-23 18:48:27] 2025-02-23 17:46:57,045 | INFO     | exitcode: 0
[2025-02-23 18:48:27] 2025-02-23 17:46:57,045 | INFO     | exitmsg: OK
[2025-02-23 18:48:27] 2025-02-23 17:46:57,045 | INFO     | cpuconsumptiontime: 80359 s
[2025-02-23 18:48:27] 2025-02-23 17:46:57,046 | INFO     | nevents: 400
[2025-02-23 18:48:27] 2025-02-23 17:46:57,046 | INFO     | neventsw: 0
[2025-02-23 18:48:27] 2025-02-23 17:46:57,046 | INFO     | pid: 3863828
[2025-02-23 18:48:27] 2025-02-23 17:46:57,046 | INFO     | pgrp: 3863828
[2025-02-23 18:48:27] 2025-02-23 17:46:57,046 | INFO     | corecount: 4
[2025-02-23 18:48:27] 2025-02-23 17:46:57,046 | INFO     | event service: False
[2025-02-23 18:48:27] 2025-02-23 17:46:57,046 | INFO     | sizes: {0: 2383179, 1: 2383434, 7: 2383640, 12: 2383668, 21158: 2416928, 21160: 2425891, 21161: 2426075, 21168: 2426245}
[2025-02-23 18:48:27] 2025-02-23 17:46:57,046 | INFO     | --------------------------------------------------
[2025-02-23 18:48:27] 2025-02-23 17:46:57,046 | INFO     | 
[2025-02-23 18:48:27] 2025-02-23 17:46:57,046 | INFO     | executing command: ls -lF /scratch/boinc/var/slot76/slots/0
[2025-02-23 18:48:27] 2025-02-23 17:46:57,082 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,082 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,082 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,082 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,082 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,082 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,083 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,083 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,083 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,083 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,083 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,083 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,083 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,083 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,083 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,083 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,084 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,084 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-23 18:48:27] 2025-02-23 17:46:57,084 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,084 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-23 18:48:27] 2025-02-23 17:46:57,084 | INFO     | job 6520972817 has completed (purged errors)
[2025-02-23 18:48:27] 2025-02-23 17:46:57,084 | INFO     | overall cleanup function is called
[2025-02-23 18:48:27] 2025-02-23 17:46:58,039 | INFO     | PID=3853989 has CPU usage=12.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-02-23 18:48:27] 2025-02-23 17:46:58,040 | INFO     | .. there are 21 such processes running
[2025-02-23 18:48:27] 2025-02-23 17:46:58,093 | INFO     | --- collectZombieJob: --- 10, [3863828]
[2025-02-23 18:48:27] 2025-02-23 17:46:58,093 | INFO     | zombie collector waiting for pid 3863828
[2025-02-23 18:48:27] 2025-02-23 17:46:58,094 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-23 18:48:27] 2025-02-23 17:46:58,094 | INFO     | collected zombie processes
[2025-02-23 18:48:27] 2025-02-23 17:46:58,094 | INFO     | will attempt to kill all subprocesses of pid=3863828
[2025-02-23 18:48:27] 2025-02-23 17:46:58,454 | INFO     | process IDs to be killed: [3863828] (in reverse order)
[2025-02-23 18:48:27] 2025-02-23 17:46:58,724 | WARNING  | found no corresponding commands to process id(s)
[2025-02-23 18:48:27] 2025-02-23 17:46:58,724 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-23 18:48:27] 2025-02-23 17:46:58,749 | INFO     | did not find any defunct processes belonging to 3863828
[2025-02-23 18:48:27] 2025-02-23 17:46:58,769 | INFO     | did not find any defunct processes belonging to 3863828
[2025-02-23 18:48:27] 2025-02-23 17:46:58,769 | INFO     | ready for new job
[2025-02-23 18:48:27] 2025-02-23 17:46:58,769 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-23 18:48:27] 2025-02-23 17:46:58,773 | INFO     | **************************************
[2025-02-23 18:48:27] 2025-02-23 17:46:58,773 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-23 18:48:27] 2025-02-23 17:46:58,773 | INFO     | **************************************
[2025-02-23 18:48:27] 2025-02-23 17:46:58,773 | INFO     | 
[2025-02-23 18:48:27] 2025-02-23 17:46:58,783 | INFO     | architecture information:
[2025-02-23 18:48:27] 2025-02-23 17:46:58,783 | INFO     | executing command: cat /etc/os-release
[2025-02-23 18:48:27] 2025-02-23 17:46:58,806 | INFO     | cat /etc/os-release:
[2025-02-23 18:48:27] NAME="CentOS Linux"
[2025-02-23 18:48:27] VERSION="7 (Core)"
[2025-02-23 18:48:27] ID="centos"
[2025-02-23 18:48:27] ID_LIKE="rhel fedora"
[2025-02-23 18:48:27] VERSION_ID="7"
[2025-02-23 18:48:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-23 18:48:27] ANSI_COLOR="0;31"
[2025-02-23 18:48:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-23 18:48:27] HOME_URL="https://www.centos.org/"
[2025-02-23 18:48:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-23 18:48:27] 
[2025-02-23 18:48:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-23 18:48:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-23 18:48:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-23 18:48:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-23 18:48:27] 
[2025-02-23 18:48:27] 2025-02-23 17:46:58,806 | INFO     | **************************************
[2025-02-23 18:48:27] 2025-02-23 17:46:59,309 | INFO     | executing command: df -mP /scratch/boinc/var/slot76/slots/0
[2025-02-23 18:48:27] 2025-02-23 17:46:59,335 | INFO     | sufficient remaining disk space (3226603618304 B)
[2025-02-23 18:48:27] 2025-02-23 17:46:59,335 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-23 18:48:27] 2025-02-23 17:46:59,335 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-23 18:48:27] 2025-02-23 17:46:59,336 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-23 18:48:27] 2025-02-23 17:46:59,610 | INFO     | all payload control threads have been joined
[2025-02-23 18:48:27] 2025-02-23 17:46:59,886 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-23 18:48:27] 2025-02-23 17:46:59,887 | INFO     | aborting loop
[2025-02-23 18:48:27] 2025-02-23 17:46:59,928 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-23 18:48:27] 2025-02-23 17:47:00,047 | INFO     | found 0 job(s) in 20 queues
[2025-02-23 18:48:27] 2025-02-23 17:47:00,047 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-23 18:48:27] 2025-02-23 17:47:00,047 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-23 18:48:27] 2025-02-23 17:47:00,121 | INFO     | all data control threads have been joined
[2025-02-23 18:48:27] 2025-02-23 17:47:00,276 | INFO     | all job control threads have been joined
[2025-02-23 18:48:27] 2025-02-23 17:47:00,341 | INFO     | [job] retrieve thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:00,615 | INFO     | [payload] control thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:00,733 | INFO     | [payload] validate_post thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:00,887 | INFO     | [job] job monitor thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:01,126 | INFO     | [data] control thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:01,177 | INFO     | [payload] failed_post thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:01,281 | INFO     | [job] control thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:01,324 | INFO     | [payload] execute_payloads thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:01,341 | INFO     | [data] copytool_out thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:01,437 | INFO     | [payload] validate_pre thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:01,676 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-23 18:48:27] 2025-02-23 17:47:01,728 | INFO     | [job] create_data_payload thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:01,735 | INFO     | [job] validate thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:01,815 | INFO     | [data] copytool_in thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:02,682 | INFO     | [job] queue monitor thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:03,934 | INFO     | [data] queue_monitor thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:09,929 | INFO     | job.realtimelogging is not enabled
[2025-02-23 18:48:27] 2025-02-23 17:47:10,934 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-23 18:48:27] 2025-02-23 17:47:11,859 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23235594233664)>', '<ExcThread(monitor, started 23235292800768)>']
[2025-02-23 18:48:27] 2025-02-23 17:47:12,099 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-23 18:48:27] 2025-02-23 17:47:12,099 | INFO     | [monitor] control thread has ended
[2025-02-23 18:48:27] 2025-02-23 17:47:16,864 | INFO     | all workflow threads have been joined
[2025-02-23 18:48:27] 2025-02-23 17:47:16,864 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-23 18:48:27] 2025-02-23 17:47:16,865 | INFO     | traces error code: 0
[2025-02-23 18:48:27] 2025-02-23 17:47:16,865 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-23 18:48:27] 2025-02-23 17:47:17,005 [wrapper] ==== pilot stdout END ====
[2025-02-23 18:48:27] 2025-02-23 17:47:17,009 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-23 18:48:27] 2025-02-23 17:47:17,013 [wrapper] pilotpid: 3853989
[2025-02-23 18:48:27] 2025-02-23 17:47:17,017 [wrapper] Pilot exit status: 0
[2025-02-23 18:48:27] 2025-02-23 17:47:17,032 [wrapper] pandaids: 6520972817
[2025-02-23 18:48:27] 2025-02-23 17:47:17,181 [wrapper] cleanup supervisor_pilot  979459 3853990
[2025-02-23 18:48:27] 2025-02-23 17:47:17,186 [wrapper] Test setup, not cleaning
[2025-02-23 18:48:27] 2025-02-23 17:47:17,193 [wrapper] apfmon messages muted
[2025-02-23 18:48:27] 2025-02-23 17:47:17,197 [wrapper] ==== wrapper stdout END ====
[2025-02-23 18:48:27] 2025-02-23 17:47:17,201 [wrapper] ==== wrapper stderr END ====
[2025-02-23 18:48:27]  *** Error codes and diagnostics ***
[2025-02-23 18:48:27]     "exeErrorCode": 0,
[2025-02-23 18:48:27]     "exeErrorDiag": "",
[2025-02-23 18:48:27]     "pilotErrorCode": 0,
[2025-02-23 18:48:27]     "pilotErrorDiag": "",
[2025-02-23 18:48:27]  *** Listing of results directory ***
[2025-02-23 18:48:27] total 666396
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc    491065 Feb 20 16:24 pilot3.tar.gz
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc      5118 Feb 20 16:25 queuedata.json
[2025-02-23 18:48:27] -rwx------ 1 boinc boinc     35865 Feb 20 16:26 runpilot2-wrapper.sh
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc       100 Feb 23 12:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-23 18:48:27] -rwxr-xr-x 1 boinc boinc      7986 Feb 23 12:53 run_atlas
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc       105 Feb 23 12:53 job.xml
[2025-02-23 18:48:27] -rw-r--r-- 2 boinc boinc 346154449 Feb 23 12:53 EVNT.43092757._000481.pool.root.1
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc      6676 Feb 23 12:53 init_data.xml
[2025-02-23 18:48:27] drwxrwx--x 2 boinc boinc      4096 Feb 23 12:53 shared
[2025-02-23 18:48:27] -rw-r--r-- 2 boinc boinc    503560 Feb 23 12:53 input.tar.gz
[2025-02-23 18:48:27] -rw-r--r-- 2 boinc boinc     17569 Feb 23 12:53 start_atlas.sh
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc         0 Feb 23 12:53 boinc_lockfile
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc      2555 Feb 23 12:53 pandaJob.out
[2025-02-23 18:48:27] -rw------- 1 boinc boinc       424 Feb 23 12:53 setup.sh.local
[2025-02-23 18:48:27] -rw------- 1 boinc boinc    987728 Feb 23 12:53 agis_schedconf.cvmfs.json
[2025-02-23 18:48:27] drwx------ 4 boinc boinc      4096 Feb 23 12:53 pilot3
[2025-02-23 18:48:27] -rw------- 1 boinc boinc 327035240 Feb 23 18:45 HITS.43205075._055106.pool.root.1
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc       530 Feb 23 18:45 boinc_task_state.xml
[2025-02-23 18:48:27] -rw------- 1 boinc boinc      1031 Feb 23 18:46 memory_monitor_summary.json
[2025-02-23 18:48:27] -rw------- 1 boinc boinc   1582569 Feb 23 18:46 agis_ddmendpoints.agis.ALL.json
[2025-02-23 18:48:27] -rw------- 1 boinc boinc    433354 Feb 23 18:46 log.43205075._055106.job.log.tgz.1
[2025-02-23 18:48:27] -rw------- 1 boinc boinc      7716 Feb 23 18:46 heartbeat.json
[2025-02-23 18:48:27] -rw------- 1 boinc boinc        95 Feb 23 18:46 pilot_heartbeat.json
[2025-02-23 18:48:27] -rw------- 1 boinc boinc      4298 Feb 23 18:47 pilotlog.txt
[2025-02-23 18:48:27] -rw------- 1 boinc boinc   2262249 Feb 23 18:47 log.43205075._055106.job.log.1
[2025-02-23 18:48:27] -rw------- 1 boinc boinc       357 Feb 23 18:47 output.list
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc       620 Feb 23 18:47 runtime_log
[2025-02-23 18:48:27] -rw------- 1 boinc boinc   2713600 Feb 23 18:47 result.tar.gz
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc     11424 Feb 23 18:47 runtime_log.err
[2025-02-23 18:48:27] -rw------- 1 boinc boinc       666 Feb 23 18:47 8feNDmwcN56nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmdUqKDm2XqGNo.diag
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc        27 Feb 23 18:48 wrapper_checkpoint.txt
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc      8192 Feb 23 18:48 boinc_mmap_file
[2025-02-23 18:48:27] -rw-r--r-- 1 boinc boinc     21403 Feb 23 18:48 stderr.txt
[2025-02-23 18:48:27] HITS file was successfully produced:
[2025-02-23 18:48:27] -rw------- 1 boinc boinc 327035240 Feb 23 18:45 shared/HITS.pool.root.1
[2025-02-23 18:48:27]  *** Contents of shared directory: ***
[2025-02-23 18:48:27] total 660588
[2025-02-23 18:48:27] -rw-r--r-- 2 boinc boinc 346154449 Feb 23 12:53 ATLAS.root_0
[2025-02-23 18:48:27] -rw-r--r-- 2 boinc boinc    503560 Feb 23 12:53 input.tar.gz
[2025-02-23 18:48:27] -rw-r--r-- 2 boinc boinc     17569 Feb 23 12:53 start_atlas.sh
[2025-02-23 18:48:27] -rw------- 1 boinc boinc 327035240 Feb 23 18:45 HITS.pool.root.1
[2025-02-23 18:48:27] -rw------- 1 boinc boinc   2713600 Feb 23 18:47 result.tar.gz
18:48:28 (3847727): run_atlas exited; CPU time 80023.871084
18:48:28 (3847727): called boinc_finish(0)

</stderr_txt>
]]>

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