Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:15:37 (4022909): wrapper (7.7.26015): starting
01:15:37 (4022909): wrapper: running run_atlas (--nthreads 4)
[2025-02-22 01:15:37] Arguments: --nthreads 4
[2025-02-22 01:15:37] Threads: 4
[2025-02-22 01:15:37] Checking for CVMFS
[2025-02-22 01:15:37] No cvmfs_config command found, will try listing directly
[2025-02-22 01:15:37] CVMFS is ok
[2025-02-22 01:15:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-22 01:15:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-22 01:15:37] Further information can be found at the LHC@home message board.
[2025-02-22 01:15:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-22 01:15:37] Checking for apptainer binary...
[2025-02-22 01:15:37] which: no apptainer in ((null))
[2025-02-22 01:15:37] apptainer is not installed, using version from CVMFS
[2025-02-22 01:15:37] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-22 01:15:37] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot44/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-02-22 01:15:37] apptainer works
[2025-02-22 01:15:37] Set ATHENA_PROC_NUMBER=4
[2025-02-22 01:15:37] Set ATHENA_CORE_NUMBER=4
[2025-02-22 01:15:37] Starting ATLAS job with PandaID=6520503276
[2025-02-22 01:15:37] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot44/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
06:10:28 (701395): wrapper (7.7.26015): starting
06:10:28 (701395): wrapper: running run_atlas (--nthreads 4)
[2025-02-22 06:10:28] Arguments: --nthreads 4
[2025-02-22 06:10:28] Threads: 4
[2025-02-22 06:10:28] This job has been restarted, cleaning up previous attempt
[2025-02-22 06:10:28] Checking for CVMFS
[2025-02-22 06:10:28] No cvmfs_config command found, will try listing directly
[2025-02-22 06:10:28] CVMFS is ok
[2025-02-22 06:10:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-22 06:10:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-22 06:10:28] Further information can be found at the LHC@home message board.
[2025-02-22 06:10:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-22 06:10:28] Checking for apptainer binary...
[2025-02-22 06:10:28] which: no apptainer in ((null))
[2025-02-22 06:10:28] apptainer is not installed, using version from CVMFS
[2025-02-22 06:10:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-22 06:10:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot44/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut10.grid.cesnet.cz
[2025-02-22 06:10:29] apptainer works
[2025-02-22 06:10:29] Set ATHENA_PROC_NUMBER=4
[2025-02-22 06:10:29] Set ATHENA_CORE_NUMBER=4
[2025-02-22 06:10:29] Starting ATLAS job with PandaID=6520503276
[2025-02-22 06:10:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot44/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-22 12:05:36]  *** The last 200 lines of the pilot log: ***
[2025-02-22 12:05:36] 2025-02-22 11:05:14,839 | INFO     | chi2: 2.912841505463536
[2025-02-22 12:05:36] 2025-02-22 11:05:14,839 | INFO     | model: linear, x: [1740201076.0, 1740201137.0, 1740201198.0, 1740201259.0, 1740201320.0, 1740201381.0, 1740201442.0, 1740201503.0, 1740201564.0, 1740201625.0, 1740
[2025-02-22 12:05:36] 2025-02-22 11:05:14,839 | INFO     | sum of square deviations: 12512874612.0
[2025-02-22 12:05:36] 2025-02-22 11:05:14,843 | INFO     | sum of deviations: 117670263432.00002
[2025-02-22 12:05:36] 2025-02-22 11:05:14,843 | INFO     | mean x: 1740211507.0
[2025-02-22 12:05:36] 2025-02-22 11:05:14,843 | INFO     | mean y: 2344422.3819241985
[2025-02-22 12:05:36] 2025-02-22 11:05:14,843 | INFO     | -- intersect: -16362492020.533417
[2025-02-22 12:05:36] 2025-02-22 11:05:14,843 | INFO     | intersect: -16362492020.533417
[2025-02-22 12:05:36] 2025-02-22 11:05:14,843 | INFO     | chi2: 2.9134996014412557
[2025-02-22 12:05:36] 2025-02-22 11:05:14,844 | INFO     | current chi2=2.9134996014412557 (change=-0.022592920915375063 %)
[2025-02-22 12:05:36] 2025-02-22 11:05:14,844 | INFO     | right removable region: 342
[2025-02-22 12:05:36] 2025-02-22 11:05:14,844 | INFO     | model: linear, x: [1740201381.0, 1740201442.0, 1740201503.0, 1740201564.0, 1740201625.0, 1740201686.0, 1740201747.0, 1740201808.0, 1740201869.0, 1740201930.0, 1740
[2025-02-22 12:05:36] 2025-02-22 11:05:14,846 | INFO     | sum of square deviations: 12512874612.0
[2025-02-22 12:05:36] 2025-02-22 11:05:14,850 | INFO     | sum of deviations: 47831747732.00001
[2025-02-22 12:05:36] 2025-02-22 11:05:14,850 | INFO     | mean x: 1740211812.0
[2025-02-22 12:05:36] 2025-02-22 11:05:14,850 | INFO     | mean y: 2364754.2303206995
[2025-02-22 12:05:36] 2025-02-22 11:05:14,850 | INFO     | -- intersect: -6649773541.154256
[2025-02-22 12:05:36] 2025-02-22 11:05:14,850 | INFO     | intersect: -6649773541.154256
[2025-02-22 12:05:36] 2025-02-22 11:05:14,850 | INFO     | chi2: 0.9420563139846283
[2025-02-22 12:05:36] 2025-02-22 11:05:14,851 | INFO     | current chi2=0.9420563139846283 (change=67.65851103749931 %)
[2025-02-22 12:05:36] 2025-02-22 11:05:14,851 | INFO     | model: linear, x: [1740201686.0, 1740201747.0, 1740201808.0, 1740201869.0, 1740201930.0, 1740201991.0, 1740202052.0, 1740202113.0, 1740202174.0, 1740202235.0, 1740
[2025-02-22 12:05:36] 2025-02-22 11:05:14,851 | INFO     | sum of square deviations: 11973599384.5
[2025-02-22 12:05:36] 2025-02-22 11:05:14,854 | INFO     | sum of deviations: -2517547866.499999
[2025-02-22 12:05:36] 2025-02-22 11:05:14,854 | INFO     | mean x: 1740211964.5
[2025-02-22 12:05:36] 2025-02-22 11:05:14,854 | INFO     | mean y: 2378991.973372781
[2025-02-22 12:05:36] 2025-02-22 11:05:14,855 | INFO     | -- intersect: 368272887.18387246
[2025-02-22 12:05:36] 2025-02-22 11:05:14,855 | INFO     | intersect: 368272887.18387246
[2025-02-22 12:05:36] 2025-02-22 11:05:14,855 | INFO     | chi2: 0.1022965297405761
[2025-02-22 12:05:36] 2025-02-22 11:05:14,855 | INFO     | current chi2=0.1022965297405761 (change=89.14114493772765 %)
[2025-02-22 12:05:36] 2025-02-22 11:05:14,856 | INFO     | model: linear, x: [1740201991.0, 1740202052.0, 1740202113.0, 1740202174.0, 1740202235.0, 1740202296.0, 1740202357.0, 1740202418.0, 1740202479.0, 1740202540.0, 1740
[2025-02-22 12:05:36] 2025-02-22 11:05:14,856 | INFO     | sum of square deviations: 11450045382.0
[2025-02-22 12:05:36] 2025-02-22 11:05:14,859 | INFO     | sum of deviations: -13725745358.99996
[2025-02-22 12:05:36] 2025-02-22 11:05:14,859 | INFO     | mean x: 1740212117.0
[2025-02-22 12:05:36] 2025-02-22 11:05:14,859 | INFO     | mean y: 2382244.4234234234
[2025-02-22 12:05:36] 2025-02-22 11:05:14,859 | INFO     | -- intersect: 2088462045.1321335
[2025-02-22 12:05:36] 2025-02-22 11:05:14,859 | INFO     | intersect: 2088462045.1321335
[2025-02-22 12:05:36] 2025-02-22 11:05:14,860 | INFO     | chi2: 0.03839829740313576
[2025-02-22 12:05:36] 2025-02-22 11:05:14,860 | INFO     | current chi2=0.03839829740313576 (change=62.46373410660772 %)
[2025-02-22 12:05:36] 2025-02-22 11:05:14,860 | INFO     | model: linear, x: [1740202296.0, 1740202357.0, 1740202418.0, 1740202479.0, 1740202540.0, 1740202601.0, 1740202662.0, 1740202723.0, 1740202784.0, 1740202845.0, 1740
[2025-02-22 12:05:36] 2025-02-22 11:05:14,860 | INFO     | sum of square deviations: 10941980042.0
[2025-02-22 12:05:36] 2025-02-22 11:05:14,863 | INFO     | sum of deviations: -13407713471.499989
[2025-02-22 12:05:36] 2025-02-22 11:05:14,863 | INFO     | mean x: 1740212269.5
[2025-02-22 12:05:36] 2025-02-22 11:05:14,863 | INFO     | mean y: 2382142.8689024393
[2025-02-22 12:05:36] 2025-02-22 11:05:14,863 | INFO     | -- intersect: 2134744603.729322
[2025-02-22 12:05:36] 2025-02-22 11:05:14,863 | INFO     | intersect: 2134744603.729322
[2025-02-22 12:05:36] 2025-02-22 11:05:14,864 | INFO     | chi2: 0.0355235218666871
[2025-02-22 12:05:36] 2025-02-22 11:05:14,864 | INFO     | current chi2=0.0355235218666871 (change=7.486726576095255 %)
[2025-02-22 12:05:36] 2025-02-22 11:05:14,864 | INFO     | left removable region: 40
[2025-02-22 12:05:36] 2025-02-22 11:05:14,864 | INFO     | model: linear, x: [1740203516.0, 1740203577.0, 1740203638.0, 1740203699.0, 1740203760.0, 1740203821.0, 1740203882.0, 1740203943.0, 1740204004.0, 1740204065.0, 1740
[2025-02-22 12:05:36] 2025-02-22 11:05:14,866 | INFO     | sum of square deviations: 8540720135.5
[2025-02-22 12:05:36] 2025-02-22 11:05:14,868 | INFO     | sum of deviations: 3747104309.5000005
[2025-02-22 12:05:36] 2025-02-22 11:05:14,868 | INFO     | mean x: 1740212696.5
[2025-02-22 12:05:36] 2025-02-22 11:05:14,868 | INFO     | mean y: 2376171.1754966886
[2025-02-22 12:05:36] 2025-02-22 11:05:14,868 | INFO     | -- intersect: -761114306.3309438
[2025-02-22 12:05:36] 2025-02-22 11:05:14,869 | INFO     | intersect: -761114306.3309438
[2025-02-22 12:05:36] 2025-02-22 11:05:14,869 | INFO     | chi2: 0.008066333315458831
[2025-02-22 12:05:36] 2025-02-22 11:05:14,869 | INFO     | -- intersect: -761114306.3309438
[2025-02-22 12:05:36] 2025-02-22 11:05:14,869 | INFO     | current memory leak: 0.44 B/s (using 302 data points, chi2=0.01)
[2025-02-22 12:05:36] 2025-02-22 11:05:14,870 | INFO     | ..............................
[2025-02-22 12:05:36] 2025-02-22 11:05:14,870 | INFO     | . Timing measurements:
[2025-02-22 12:05:36] 2025-02-22 11:05:14,870 | INFO     | . get job = 0 s
[2025-02-22 12:05:36] 2025-02-22 11:05:14,870 | INFO     | . initial setup = 1 s
[2025-02-22 12:05:36] 2025-02-22 11:05:14,870 | INFO     | . payload setup = 8 s
[2025-02-22 12:05:36] 2025-02-22 11:05:14,871 | INFO     | . stage-in = 0 s
[2025-02-22 12:05:36] 2025-02-22 11:05:14,871 | INFO     | . payload execution = 21230 s
[2025-02-22 12:05:36] 2025-02-22 11:05:14,871 | INFO     | . stage-out = 1 s
[2025-02-22 12:05:36] 2025-02-22 11:05:14,871 | INFO     | . log creation = 0 s
[2025-02-22 12:05:36] 2025-02-22 11:05:14,871 | INFO     | ..............................
[2025-02-22 12:05:36] 2025-02-22 11:05:14,969 | INFO     | 
[2025-02-22 12:05:36] 2025-02-22 11:05:14,969 | INFO     | job summary report
[2025-02-22 12:05:36] 2025-02-22 11:05:14,969 | INFO     | --------------------------------------------------
[2025-02-22 12:05:36] 2025-02-22 11:05:14,969 | INFO     | PanDA job id: 6520503276
[2025-02-22 12:05:36] 2025-02-22 11:05:14,969 | INFO     | task id: 43205094
[2025-02-22 12:05:36] 2025-02-22 11:05:14,969 | INFO     | errors: (none)
[2025-02-22 12:05:36] 2025-02-22 11:05:14,969 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-22 12:05:36] 2025-02-22 11:05:14,970 | INFO     | pilot state: finished 
[2025-02-22 12:05:36] 2025-02-22 11:05:14,970 | INFO     | transexitcode: 0
[2025-02-22 12:05:36] 2025-02-22 11:05:14,970 | INFO     | exeerrorcode: 0
[2025-02-22 12:05:36] 2025-02-22 11:05:14,970 | INFO     | exeerrordiag: 
[2025-02-22 12:05:36] 2025-02-22 11:05:14,970 | INFO     | exitcode: 0
[2025-02-22 12:05:36] 2025-02-22 11:05:14,970 | INFO     | exitmsg: OK
[2025-02-22 12:05:36] 2025-02-22 11:05:14,970 | INFO     | cpuconsumptiontime: 80548 s
[2025-02-22 12:05:36] 2025-02-22 11:05:14,970 | INFO     | nevents: 400
[2025-02-22 12:05:36] 2025-02-22 11:05:14,970 | INFO     | neventsw: 0
[2025-02-22 12:05:36] 2025-02-22 11:05:14,970 | INFO     | pid: 712817
[2025-02-22 12:05:36] 2025-02-22 11:05:14,970 | INFO     | pgrp: 712817
[2025-02-22 12:05:36] 2025-02-22 11:05:14,971 | INFO     | corecount: 4
[2025-02-22 12:05:36] 2025-02-22 11:05:14,971 | INFO     | event service: False
[2025-02-22 12:05:36] 2025-02-22 11:05:14,971 | INFO     | sizes: {0: 2383320, 1: 2383348, 7: 2383554, 11: 2383582, 21242: 2416789, 21245: 2425752, 21246: 2425936, 21255: 2426106}
[2025-02-22 12:05:36] 2025-02-22 11:05:14,971 | INFO     | --------------------------------------------------
[2025-02-22 12:05:36] 2025-02-22 11:05:14,971 | INFO     | 
[2025-02-22 12:05:36] 2025-02-22 11:05:14,971 | INFO     | executing command: ls -lF /scratch/boinc/var/slot44/slots/0
[2025-02-22 12:05:36] 2025-02-22 11:05:15,001 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,002 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,002 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,002 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,002 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,002 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,002 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,003 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,003 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,003 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,003 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,003 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,003 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,003 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,003 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,003 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,003 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,003 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-22 12:05:36] 2025-02-22 11:05:15,004 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,004 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-22 12:05:36] 2025-02-22 11:05:15,004 | INFO     | job 6520503276 has completed (purged errors)
[2025-02-22 12:05:36] 2025-02-22 11:05:15,004 | INFO     | overall cleanup function is called
[2025-02-22 12:05:36] 2025-02-22 11:05:16,013 | INFO     | --- collectZombieJob: --- 10, [712817]
[2025-02-22 12:05:36] 2025-02-22 11:05:16,014 | INFO     | zombie collector waiting for pid 712817
[2025-02-22 12:05:36] 2025-02-22 11:05:16,014 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-22 12:05:36] 2025-02-22 11:05:16,014 | INFO     | collected zombie processes
[2025-02-22 12:05:36] 2025-02-22 11:05:16,014 | INFO     | will attempt to kill all subprocesses of pid=712817
[2025-02-22 12:05:36] 2025-02-22 11:05:16,336 | INFO     | process IDs to be killed: [712817] (in reverse order)
[2025-02-22 12:05:36] 2025-02-22 11:05:16,577 | WARNING  | found no corresponding commands to process id(s)
[2025-02-22 12:05:36] 2025-02-22 11:05:16,577 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-22 12:05:36] 2025-02-22 11:05:16,602 | INFO     | did not find any defunct processes belonging to 712817
[2025-02-22 12:05:36] 2025-02-22 11:05:16,622 | INFO     | did not find any defunct processes belonging to 712817
[2025-02-22 12:05:36] 2025-02-22 11:05:16,623 | INFO     | ready for new job
[2025-02-22 12:05:36] 2025-02-22 11:05:16,623 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-22 12:05:36] 2025-02-22 11:05:16,625 | INFO     | **************************************
[2025-02-22 12:05:36] 2025-02-22 11:05:16,626 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-22 12:05:36] 2025-02-22 11:05:16,626 | INFO     | **************************************
[2025-02-22 12:05:36] 2025-02-22 11:05:16,626 | INFO     | 
[2025-02-22 12:05:36] 2025-02-22 11:05:16,634 | INFO     | architecture information:
[2025-02-22 12:05:36] 2025-02-22 11:05:16,634 | INFO     | executing command: cat /etc/os-release
[2025-02-22 12:05:36] 2025-02-22 11:05:16,655 | INFO     | cat /etc/os-release:
[2025-02-22 12:05:36] NAME="CentOS Linux"
[2025-02-22 12:05:36] VERSION="7 (Core)"
[2025-02-22 12:05:36] ID="centos"
[2025-02-22 12:05:36] ID_LIKE="rhel fedora"
[2025-02-22 12:05:36] VERSION_ID="7"
[2025-02-22 12:05:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-22 12:05:36] ANSI_COLOR="0;31"
[2025-02-22 12:05:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-22 12:05:36] HOME_URL="https://www.centos.org/"
[2025-02-22 12:05:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-22 12:05:36] 
[2025-02-22 12:05:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-22 12:05:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-22 12:05:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-22 12:05:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-22 12:05:36] 
[2025-02-22 12:05:36] 2025-02-22 11:05:16,655 | INFO     | **************************************
[2025-02-22 12:05:36] 2025-02-22 11:05:17,158 | INFO     | executing command: df -mP /scratch/boinc/var/slot44/slots/0
[2025-02-22 12:05:36] 2025-02-22 11:05:17,183 | INFO     | sufficient remaining disk space (3238313066496 B)
[2025-02-22 12:05:36] 2025-02-22 11:05:17,184 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-22 12:05:36] 2025-02-22 11:05:17,184 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-22 12:05:36] 2025-02-22 11:05:17,184 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-02-22 12:05:36] 2025-02-22 11:05:17,185 | INFO     | found 0 job(s) in 20 queues
[2025-02-22 12:05:36] 2025-02-22 11:05:17,185 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-22 12:05:36] 2025-02-22 11:05:17,185 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-22 12:05:36] 2025-02-22 11:05:17,217 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-22 12:05:36] 2025-02-22 11:05:17,482 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-22 12:05:36] 2025-02-22 11:05:17,482 | INFO     | aborting loop
[2025-02-22 12:05:36] 2025-02-22 11:05:17,947 | INFO     | all job control threads have been joined
[2025-02-22 12:05:36] 2025-02-22 11:05:17,969 | INFO     | all data control threads have been joined
[2025-02-22 12:05:36] 2025-02-22 11:05:18,046 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-22 12:05:36] 2025-02-22 11:05:18,148 | INFO     | all payload control threads have been joined
[2025-02-22 12:05:36] 2025-02-22 11:05:18,189 | INFO     | [job] retrieve thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:18,272 | INFO     | [payload] validate_post thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:18,487 | INFO     | [job] job monitor thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:18,633 | INFO     | [payload] execute_payloads thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:18,952 | INFO     | [job] control thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:18,975 | INFO     | [data] control thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:19,148 | INFO     | [payload] control thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:19,187 | INFO     | [job] validate thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:19,339 | INFO     | [data] copytool_in thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:19,588 | INFO     | [job] create_data_payload thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:19,622 | INFO     | [payload] validate_pre thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:19,755 | INFO     | [payload] failed_post thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:19,974 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-22 12:05:36] 2025-02-22 11:05:20,052 | INFO     | [data] copytool_out thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:20,979 | INFO     | [job] queue monitor thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:21,222 | INFO     | [data] queue_monitor thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:28,231 | INFO     | job.realtimelogging is not enabled
[2025-02-22 12:05:36] 2025-02-22 11:05:29,236 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-22 12:05:36] 2025-02-22 11:05:30,557 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22446191167296)>', '<ExcThread(monitor, started 22445880727296)>']
[2025-02-22 12:05:36] 2025-02-22 11:05:31,254 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-22 12:05:36] 2025-02-22 11:05:31,254 | INFO     | [monitor] control thread has ended
[2025-02-22 12:05:36] 2025-02-22 11:05:35,582 | INFO     | all workflow threads have been joined
[2025-02-22 12:05:36] 2025-02-22 11:05:35,583 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-22 12:05:36] 2025-02-22 11:05:35,583 | INFO     | traces error code: 0
[2025-02-22 12:05:36] 2025-02-22 11:05:35,583 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-22 12:05:36] 2025-02-22 11:05:35,770 [wrapper] ==== pilot stdout END ====
[2025-02-22 12:05:36] 2025-02-22 11:05:35,775 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-22 12:05:36] 2025-02-22 11:05:35,779 [wrapper] pilotpid: 705362
[2025-02-22 12:05:36] 2025-02-22 11:05:35,783 [wrapper] Pilot exit status: 0
[2025-02-22 12:05:36] 2025-02-22 11:05:35,796 [wrapper] pandaids: 6520503276 6520503276
[2025-02-22 12:05:36] 2025-02-22 11:05:35,946 [wrapper] cleanup supervisor_pilot 2132376 705363
[2025-02-22 12:05:36] 2025-02-22 11:05:35,951 [wrapper] Test setup, not cleaning
[2025-02-22 12:05:36] 2025-02-22 11:05:35,959 [wrapper] apfmon messages muted
[2025-02-22 12:05:36] 2025-02-22 11:05:35,963 [wrapper] ==== wrapper stdout END ====
[2025-02-22 12:05:36] 2025-02-22 11:05:35,967 [wrapper] ==== wrapper stderr END ====
[2025-02-22 12:05:36]  *** Error codes and diagnostics ***
[2025-02-22 12:05:36]     "exeErrorCode": 0,
[2025-02-22 12:05:36]     "exeErrorDiag": "",
[2025-02-22 12:05:36]     "pilotErrorCode": 0,
[2025-02-22 12:05:36]     "pilotErrorDiag": "",
[2025-02-22 12:05:36]  *** Listing of results directory ***
[2025-02-22 12:05:36] total 1013548
[2025-02-22 12:05:36] drwx------ 4 boinc boinc      4096 Dec 18 12:03 pilot3
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc    491065 Feb 20 09:54 pilot3.tar.gz
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc      5118 Feb 20 10:14 queuedata.json
[2025-02-22 12:05:36] -rwx------ 1 boinc boinc     35865 Feb 20 10:15 runpilot2-wrapper.sh
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc       100 Feb 22 01:15 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-22 12:05:36] -rwxr-xr-x 1 boinc boinc      7986 Feb 22 01:15 run_atlas
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc       105 Feb 22 01:15 job.xml
[2025-02-22 12:05:36] -rw-r--r-- 3 boinc boinc 347233454 Feb 22 01:15 EVNT.43092757._001775.pool.root.1
[2025-02-22 12:05:36] -rw-r--r-- 3 boinc boinc 347233454 Feb 22 01:15 ATLAS.root_0
[2025-02-22 12:05:36] drwxrwx--x 2 boinc boinc      4096 Feb 22 01:15 shared
[2025-02-22 12:05:36] -rw-r--r-- 2 boinc boinc    503556 Feb 22 01:15 input.tar.gz
[2025-02-22 12:05:36] -rw-r--r-- 2 boinc boinc     17569 Feb 22 01:15 start_atlas.sh
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc         0 Feb 22 01:15 boinc_lockfile
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc      2547 Feb 22 06:10 pandaJob.out
[2025-02-22 12:05:36] -rw------- 1 boinc boinc       424 Feb 22 06:10 setup.sh.local
[2025-02-22 12:05:36] -rw------- 1 boinc boinc    987689 Feb 22 06:10 agis_schedconf.cvmfs.json
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc      6684 Feb 22 07:16 init_data.xml
[2025-02-22 12:05:36] -rw------- 1 boinc boinc 334146774 Feb 22 12:04 HITS.43205094._025335.pool.root.1
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc       532 Feb 22 12:04 boinc_task_state.xml
[2025-02-22 12:05:36] -rw------- 1 boinc boinc      1044 Feb 22 12:04 memory_monitor_summary.json
[2025-02-22 12:05:36] -rw------- 1 boinc boinc   1582569 Feb 22 12:05 agis_ddmendpoints.agis.ALL.json
[2025-02-22 12:05:36] -rw------- 1 boinc boinc    442422 Feb 22 12:05 log.43205094._025335.job.log.tgz.1
[2025-02-22 12:05:36] -rw------- 1 boinc boinc        97 Feb 22 12:05 pilot_heartbeat.json
[2025-02-22 12:05:36] -rw------- 1 boinc boinc      7717 Feb 22 12:05 heartbeat.json
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc      8192 Feb 22 12:05 boinc_mmap_file
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc        29 Feb 22 12:05 wrapper_checkpoint.txt
[2025-02-22 12:05:36] -rw------- 1 boinc boinc      4421 Feb 22 12:05 pilotlog.txt
[2025-02-22 12:05:36] -rw------- 1 boinc boinc   2280488 Feb 22 12:05 log.43205094._025335.job.log.1
[2025-02-22 12:05:36] -rw------- 1 boinc boinc       357 Feb 22 12:05 output.list
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc       620 Feb 22 12:05 runtime_log
[2025-02-22 12:05:36] -rw------- 1 boinc boinc   2744320 Feb 22 12:05 result.tar.gz
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc     11501 Feb 22 12:05 runtime_log.err
[2025-02-22 12:05:36] -rw------- 1 boinc boinc       792 Feb 22 12:05 BxfNDmRpH56nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmTspKDm83PIMn.diag
[2025-02-22 12:05:36] -rw-r--r-- 1 boinc boinc     23274 Feb 22 12:05 stderr.txt
[2025-02-22 12:05:36] HITS file was successfully produced:
[2025-02-22 12:05:36] -rw------- 1 boinc boinc 334146774 Feb 22 12:04 shared/HITS.pool.root.1
[2025-02-22 12:05:36]  *** Contents of shared directory: ***
[2025-02-22 12:05:36] total 668612
[2025-02-22 12:05:36] -rw-r--r-- 3 boinc boinc 347233454 Feb 22 01:15 ATLAS.root_0
[2025-02-22 12:05:36] -rw-r--r-- 2 boinc boinc    503556 Feb 22 01:15 input.tar.gz
[2025-02-22 12:05:36] -rw-r--r-- 2 boinc boinc     17569 Feb 22 01:15 start_atlas.sh
[2025-02-22 12:05:36] -rw------- 1 boinc boinc 334146774 Feb 22 12:04 HITS.pool.root.1
[2025-02-22 12:05:36] -rw------- 1 boinc boinc   2744320 Feb 22 12:05 result.tar.gz
12:05:37 (701395): run_atlas exited; CPU time 80277.063618
12:05:37 (701395): called boinc_finish(0)

</stderr_txt>
]]>

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