Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
04:06:46 (12922): wrapper (7.7.26015): starting
04:06:46 (12922): wrapper: running run_atlas (--nthreads 10)
[2025-02-20 04:06:46] Arguments: --nthreads 10
[2025-02-20 04:06:46] Threads: 10
[2025-02-20 04:06:46] Checking for CVMFS
[2025-02-20 04:06:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-02-20 04:06:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-02-20 04:06:48] Running cvmfs_config stat atlas.cern.ch
[2025-02-20 04:06:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-02-20 04:06:49] 2.11.2.0 26758 133666 203508 142856 2 337 16153076 18432001 7982 130560 0 41996895 99.332 66775013 45621 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-02-20 04:06:49] CVMFS is ok
[2025-02-20 04:06:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-20 04:06:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-20 04:06:49] Further information can be found at the LHC@home message board.
[2025-02-20 04:06:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-20 04:06:49] Checking for apptainer binary...
[2025-02-20 04:06:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-02-20 04:06:49] Running /usr/bin/apptainer --version
[2025-02-20 04:06:49] apptainer version 1.3.2-1.el7
[2025-02-20 04:06:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-20 04:07:00] c-211-2.aglt2.org
[2025-02-20 04:07:00] apptainer works
[2025-02-20 04:07:01] Set ATHENA_PROC_NUMBER=10
[2025-02-20 04:07:01] Set ATHENA_CORE_NUMBER=10
[2025-02-20 04:07:01] Starting ATLAS job with PandaID=6520204066
[2025-02-20 04:07:01] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-21 00:26:45]  *** The last 200 lines of the pilot log: ***
[2025-02-21 00:26:45] 2025-02-21 05:26:16,824 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-21 00:26:45] 2025-02-21 05:26:19,328 | INFO     | monitor loop #4398: job 0:6520204066 is in state 'finished'
[2025-02-21 00:26:45] 2025-02-21 05:26:19,329 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-21 00:26:45] 2025-02-21 05:26:19,393 | INFO     | PID=21354 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-21 00:26:45] 2025-02-21 05:26:19,394 | INFO     | .. there are 6 such processes running
[2025-02-21 00:26:45] 2025-02-21 05:26:21,835 | INFO     | monitor loop #4399: job 0:6520204066 is in state 'finished'
[2025-02-21 00:26:45] 2025-02-21 05:26:21,836 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-21 00:26:45] 2025-02-21 05:26:24,340 | INFO     | monitor loop #4400: job 0:6520204066 is in state 'finished'
[2025-02-21 00:26:45] 2025-02-21 05:26:24,343 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-21 00:26:45] 2025-02-21 05:26:26,850 | INFO     | monitor loop #4401: job 0:6520204066 is in state 'finished'
[2025-02-21 00:26:45] 2025-02-21 05:26:26,851 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-21 00:26:45] 2025-02-21 05:26:28,422 | INFO     | 72991s have passed since pilot start
[2025-02-21 00:26:45] 2025-02-21 05:26:29,208 | INFO     | CPU arch script returned: x86-64-v3
[2025-02-21 00:26:45] 2025-02-21 05:26:29,209 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6520204066/memory_monitor_summary.json (trf name=prmon)
[2025-02-21 00:26:45] 2025-02-21 05:26:29,210 | INFO     | extracted standard info from prmon json
[2025-02-21 00:26:45] 2025-02-21 05:26:29,210 | INFO     | extracted standard memory fields from prmon json
[2025-02-21 00:26:45] 2025-02-21 05:26:29,210 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-02-21 00:26:45] 2025-02-21 05:26:29,210 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-02-21 00:26:45] 2025-02-21 05:26:29,211 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-02-21 00:26:45] 2025-02-21 05:26:29,261 | INFO     | fitting pss+swap vs Time
[2025-02-21 00:26:45] 2025-02-21 05:26:29,265 | INFO     | model: linear, x: [1740043105.0, 1740043166.0, 1740043227.0, 1740043288.0, 1740043349.0, 1740043410.0, 1740043471.0, 1740043532.0, 1740043593.0, 1740043654.0, 1740
[2025-02-21 00:26:45] 2025-02-21 05:26:29,268 | INFO     | sum of square deviations: 519918177026.7558
[2025-02-21 00:26:45] 2025-02-21 05:26:29,362 | INFO     | sum of deviations: 3446347838345.648
[2025-02-21 00:26:45] 2025-02-21 05:26:29,364 | INFO     | mean x: 1740079309.51431
[2025-02-21 00:26:45] 2025-02-21 05:26:29,364 | INFO     | mean y: 2584677.462121212
[2025-02-21 00:26:45] 2025-02-21 05:26:29,364 | INFO     | -- intersect: -11531765979.76835
[2025-02-21 00:26:45] 2025-02-21 05:26:29,362 | INFO     | monitor loop #4402: job 0:6520204066 is in state 'finished'
[2025-02-21 00:26:45] 2025-02-21 05:26:29,368 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-02-21 00:26:45] 2025-02-21 05:26:29,364 | INFO     | intersect: -11531765979.76835
[2025-02-21 00:26:45] 2025-02-21 05:26:29,370 | INFO     | chi2: 20.938484261176892
[2025-02-21 00:26:45] 2025-02-21 05:26:29,371 | INFO     | model: linear, x: [1740043105.0, 1740043166.0, 1740043227.0, 1740043288.0, 1740043349.0, 1740043410.0, 1740043471.0, 1740043532.0, 1740043593.0, 1740043654.0, 1740
[2025-02-21 00:26:45] 2025-02-21 05:26:29,373 | INFO     | sum of square deviations: 513381621981.5913
[2025-02-21 00:26:45] 2025-02-21 05:26:29,461 | INFO     | sum of deviations: 3601602181134.8096
[2025-02-21 00:26:45] 2025-02-21 05:26:29,461 | INFO     | mean x: 1740079157.018597
[2025-02-21 00:26:45] 2025-02-21 05:26:29,462 | INFO     | mean y: 2588289.3719357564
[2025-02-21 00:26:45] 2025-02-21 05:26:29,462 | INFO     | -- intersect: -12204846918.52517
[2025-02-21 00:26:45] 2025-02-21 05:26:29,462 | INFO     | intersect: -12204846918.52517
[2025-02-21 00:26:45] 2025-02-21 05:26:29,464 | INFO     | chi2: 19.405087973788845
[2025-02-21 00:26:45] 2025-02-21 05:26:29,464 | INFO     | current chi2=19.405087973788845 (change=7.3233394942116 %)
[2025-02-21 00:26:45] 2025-02-21 05:26:29,464 | INFO     | right removable region: 1182
[2025-02-21 00:26:45] 2025-02-21 05:26:29,466 | INFO     | model: linear, x: [1740043410.0, 1740043471.0, 1740043532.0, 1740043593.0, 1740043654.0, 1740043715.0, 1740043776.0, 1740043837.0, 1740043898.0, 1740043959.0, 1740
[2025-02-21 00:26:45] 2025-02-21 05:26:29,466 | INFO     | sum of square deviations: 513380886931.5912
[2025-02-21 00:26:45] 2025-02-21 05:26:29,508 | INFO     | sum of deviations: 2990405518918.7266
[2025-02-21 00:26:45] 2025-02-21 05:26:29,508 | INFO     | mean x: 1740079462.018597
[2025-02-21 00:26:45] 2025-02-21 05:26:29,508 | INFO     | mean y: 2595313.1487743026
[2025-02-21 00:26:45] 2025-02-21 05:26:29,508 | INFO     | -- intersect: -10133238254.163054
[2025-02-21 00:26:45] 2025-02-21 05:26:29,508 | INFO     | intersect: -10133238254.163054
[2025-02-21 00:26:45] 2025-02-21 05:26:29,510 | INFO     | chi2: 15.831713065447563
[2025-02-21 00:26:45] 2025-02-21 05:26:29,510 | INFO     | current chi2=15.831713065447563 (change=24.389402461180314 %)
[2025-02-21 00:26:45] 2025-02-21 05:26:29,510 | INFO     | left removable region: 10
[2025-02-21 00:26:45] 2025-02-21 05:26:29,511 | INFO     | model: linear, x: [1740043715.0, 1740043776.0, 1740043837.0, 1740043898.0, 1740043959.0, 1740044020.0, 1740044081.0, 1740044142.0, 1740044204.0, 1740044265.0, 1740
[2025-02-21 00:26:45] 2025-02-21 05:26:29,512 | INFO     | sum of square deviations: 499193088826.07025
[2025-02-21 00:26:45] 2025-02-21 05:26:29,597 | INFO     | sum of deviations: 2747783159092.329
[2025-02-21 00:26:45] 2025-02-21 05:26:29,597 | INFO     | mean x: 1740079431.528157
[2025-02-21 00:26:45] 2025-02-21 05:26:29,597 | INFO     | mean y: 2608332.262798635
[2025-02-21 00:26:45] 2025-02-21 05:26:29,598 | INFO     | -- intersect: -9575571062.568434
[2025-02-21 00:26:45] 2025-02-21 05:26:29,598 | INFO     | intersect: -9575571062.568434
[2025-02-21 00:26:45] 2025-02-21 05:26:29,603 | INFO     | chi2: 10.522660054583135
[2025-02-21 00:26:45] 2025-02-21 05:26:29,604 | INFO     | -- intersect: -9575571062.568434
[2025-02-21 00:26:45] 2025-02-21 05:26:29,604 | INFO     | current memory leak: 5.50 B/s (using 1172 data points, chi2=10.52)
[2025-02-21 00:26:45] 2025-02-21 05:26:29,605 | INFO     | ..............................
[2025-02-21 00:26:45] 2025-02-21 05:26:29,605 | INFO     | . Timing measurements:
[2025-02-21 00:26:45] 2025-02-21 05:26:29,606 | INFO     | . get job = 1 s
[2025-02-21 00:26:45] 2025-02-21 05:26:29,606 | INFO     | . initial setup = 16 s
[2025-02-21 00:26:45] 2025-02-21 05:26:29,606 | INFO     | . payload setup = 143 s
[2025-02-21 00:26:45] 2025-02-21 05:26:29,606 | INFO     | . stage-in = 1 s
[2025-02-21 00:26:45] 2025-02-21 05:26:29,606 | INFO     | . payload execution = 72597 s
[2025-02-21 00:26:45] 2025-02-21 05:26:29,606 | INFO     | . stage-out = 4 s
[2025-02-21 00:26:45] 2025-02-21 05:26:29,606 | INFO     | . log creation = 1 s
[2025-02-21 00:26:45] 2025-02-21 05:26:29,606 | INFO     | ..............................
[2025-02-21 00:26:45] 2025-02-21 05:26:29,721 | INFO     | 
[2025-02-21 00:26:45] 2025-02-21 05:26:29,722 | INFO     | job summary report
[2025-02-21 00:26:45] 2025-02-21 05:26:29,722 | INFO     | --------------------------------------------------
[2025-02-21 00:26:45] 2025-02-21 05:26:29,722 | INFO     | PanDA job id: 6520204066
[2025-02-21 00:26:45] 2025-02-21 05:26:29,722 | INFO     | task id: 43205094
[2025-02-21 00:26:45] 2025-02-21 05:26:29,722 | INFO     | errors: (none)
[2025-02-21 00:26:45] 2025-02-21 05:26:29,722 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-21 00:26:45] 2025-02-21 05:26:29,722 | INFO     | pilot state: finished 
[2025-02-21 00:26:45] 2025-02-21 05:26:29,723 | INFO     | transexitcode: 0
[2025-02-21 00:26:45] 2025-02-21 05:26:29,723 | INFO     | exeerrorcode: 0
[2025-02-21 00:26:45] 2025-02-21 05:26:29,723 | INFO     | exeerrordiag: 
[2025-02-21 00:26:45] 2025-02-21 05:26:29,723 | INFO     | exitcode: 0
[2025-02-21 00:26:45] 2025-02-21 05:26:29,723 | INFO     | exitmsg: OK
[2025-02-21 00:26:45] 2025-02-21 05:26:29,723 | INFO     | cpuconsumptiontime: 118715 s
[2025-02-21 00:26:45] 2025-02-21 05:26:29,723 | INFO     | nevents: 400
[2025-02-21 00:26:45] 2025-02-21 05:26:29,723 | INFO     | neventsw: 0
[2025-02-21 00:26:45] 2025-02-21 05:26:29,724 | INFO     | pid: 4003
[2025-02-21 00:26:45] 2025-02-21 05:26:29,724 | INFO     | pgrp: 4003
[2025-02-21 00:26:45] 2025-02-21 05:26:29,724 | INFO     | corecount: 10
[2025-02-21 00:26:45] 2025-02-21 05:26:29,724 | INFO     | event service: False
[2025-02-21 00:26:45] 2025-02-21 05:26:29,724 | INFO     | sizes: {0: 2389088, 1: 2389144, 3: 2389172, 4: 2389200, 5: 2389455, 16: 2389455, 29: 2389611, 41: 2389639, 53: 2389667, 65: 2389695, 77: 2389723, 89: 2390293, 101:
[2025-02-21 00:26:45] 2025-02-21 05:26:29,724 | INFO     | --------------------------------------------------
[2025-02-21 00:26:45] 2025-02-21 05:26:29,724 | INFO     | 
[2025-02-21 00:26:45] 2025-02-21 05:26:29,725 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-02-21 00:26:45] 2025-02-21 05:26:29,903 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,903 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,904 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,904 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,904 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,904 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,904 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,904 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,904 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,905 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,905 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,905 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,905 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,909 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,909 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,910 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,910 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,910 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-21 00:26:45] 2025-02-21 05:26:29,910 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,910 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-21 00:26:45] 2025-02-21 05:26:29,914 | INFO     | job 6520204066 has completed (purged errors)
[2025-02-21 00:26:45] 2025-02-21 05:26:29,914 | INFO     | overall cleanup function is called
[2025-02-21 00:26:45] 2025-02-21 05:26:30,925 | INFO     | --- collectZombieJob: --- 10, [4003]
[2025-02-21 00:26:45] 2025-02-21 05:26:30,925 | INFO     | zombie collector waiting for pid 4003
[2025-02-21 00:26:45] 2025-02-21 05:26:30,925 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-21 00:26:45] 2025-02-21 05:26:30,925 | INFO     | collected zombie processes
[2025-02-21 00:26:45] 2025-02-21 05:26:30,925 | INFO     | will attempt to kill all subprocesses of pid=4003
[2025-02-21 00:26:45] 2025-02-21 05:26:31,300 | INFO     | process IDs to be killed: [4003] (in reverse order)
[2025-02-21 00:26:45] 2025-02-21 05:26:31,757 | WARNING  | found no corresponding commands to process id(s)
[2025-02-21 00:26:45] 2025-02-21 05:26:31,757 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-21 00:26:45] 2025-02-21 05:26:31,764 | INFO     | did not find any defunct processes belonging to 4003
[2025-02-21 00:26:45] 2025-02-21 05:26:31,770 | INFO     | did not find any defunct processes belonging to 4003
[2025-02-21 00:26:45] 2025-02-21 05:26:31,771 | INFO     | ready for new job
[2025-02-21 00:26:45] 2025-02-21 05:26:31,771 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-21 00:26:45] 2025-02-21 05:26:31,777 | INFO     | **************************************
[2025-02-21 00:26:45] 2025-02-21 05:26:31,777 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-21 00:26:45] 2025-02-21 05:26:31,777 | INFO     | **************************************
[2025-02-21 00:26:45] 2025-02-21 05:26:31,777 | INFO     | 
[2025-02-21 00:26:45] 2025-02-21 05:26:31,780 | INFO     | architecture information:
[2025-02-21 00:26:45] 2025-02-21 05:26:31,781 | INFO     | executing command: cat /etc/os-release
[2025-02-21 00:26:45] 2025-02-21 05:26:31,908 | INFO     | cat /etc/os-release:
[2025-02-21 00:26:45] NAME="CentOS Linux"
[2025-02-21 00:26:45] VERSION="7 (Core)"
[2025-02-21 00:26:45] ID="centos"
[2025-02-21 00:26:45] ID_LIKE="rhel fedora"
[2025-02-21 00:26:45] VERSION_ID="7"
[2025-02-21 00:26:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-21 00:26:45] ANSI_COLOR="0;31"
[2025-02-21 00:26:45] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-21 00:26:45] HOME_URL="https://www.centos.org/"
[2025-02-21 00:26:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-21 00:26:45] 
[2025-02-21 00:26:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-21 00:26:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-21 00:26:45] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-21 00:26:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-21 00:26:45] 
[2025-02-21 00:26:45] 2025-02-21 05:26:31,908 | INFO     | **************************************
[2025-02-21 00:26:45] 2025-02-21 05:26:32,412 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-02-21 00:26:45] 2025-02-21 05:26:32,580 | INFO     | sufficient remaining disk space (56259248128 B)
[2025-02-21 00:26:45] 2025-02-21 05:26:32,580 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-21 00:26:45] 2025-02-21 05:26:32,581 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-21 00:26:45] 2025-02-21 05:26:32,597 | INFO     | all payload control threads have been joined
[2025-02-21 00:26:45] 2025-02-21 05:26:32,881 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-21 00:26:45] 2025-02-21 05:26:32,882 | INFO     | aborting loop
[2025-02-21 00:26:45] 2025-02-21 05:26:33,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-21 00:26:45] 2025-02-21 05:26:33,399 | INFO     | all job control threads have been joined
[2025-02-21 00:26:45] 2025-02-21 05:26:33,494 | INFO     | found 0 job(s) in 20 queues
[2025-02-21 00:26:45] 2025-02-21 05:26:33,495 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-21 00:26:45] 2025-02-21 05:26:33,495 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-21 00:26:45] 2025-02-21 05:26:33,497 | INFO     | all data control threads have been joined
[2025-02-21 00:26:45] 2025-02-21 05:26:33,588 | INFO     | [job] retrieve thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:33,602 | INFO     | [payload] control thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:33,828 | INFO     | [job] create_data_payload thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:33,887 | INFO     | [job] job monitor thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:33,916 | INFO     | [job] validate thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:34,139 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-21 00:26:45] 2025-02-21 05:26:34,157 | INFO     | [payload] failed_post thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:34,325 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:34,405 | INFO     | [job] control thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:34,500 | INFO     | [payload] execute_payloads thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:34,503 | INFO     | [data] control thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:34,627 | INFO     | [data] copytool_in thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:34,734 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-21 00:26:45] 2025-02-21 05:26:34,906 | INFO     | [payload] validate_pre thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:35,099 | INFO     | [payload] validate_post thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:35,377 | INFO     | [data] copytool_out thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:35,740 | INFO     | [job] queue monitor thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:38,173 | INFO     | [data] queue_monitor thread has finished
[2025-02-21 00:26:45] 2025-02-21 05:26:38,629 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140037972109120)>', '<ExcThread(monitor, started 140037249287936)>']
[2025-02-21 00:26:45] 2025-02-21 05:26:39,529 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-21 00:26:45] 2025-02-21 05:26:39,530 | INFO     | [monitor] control thread has ended
[2025-02-21 00:26:45] 2025-02-21 05:26:43,655 | INFO     | all workflow threads have been joined
[2025-02-21 00:26:45] 2025-02-21 05:26:43,656 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-21 00:26:45] 2025-02-21 05:26:43,656 | INFO     | traces error code: 0
[2025-02-21 00:26:45] 2025-02-21 05:26:43,687 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-21 00:26:45] 2025-02-21 05:26:43,995 [wrapper] ==== pilot stdout END ====
[2025-02-21 00:26:45] 2025-02-21 05:26:44,023 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-21 00:26:45] 2025-02-21 05:26:44,060 [wrapper] pilotpid: 21354
[2025-02-21 00:26:45] 2025-02-21 05:26:44,097 [wrapper] Pilot exit status: 0
[2025-02-21 00:26:45] 2025-02-21 05:26:44,240 [wrapper] pandaids: 6520204066
[2025-02-21 00:26:45] 2025-02-21 05:26:44,412 [wrapper] cleanup supervisor_pilot 40875 21355
[2025-02-21 00:26:45] 2025-02-21 05:26:44,449 [wrapper] Test setup, not cleaning
[2025-02-21 00:26:45] 2025-02-21 05:26:44,528 [wrapper] apfmon messages muted
[2025-02-21 00:26:45] 2025-02-21 05:26:44,551 [wrapper] ==== wrapper stdout END ====
[2025-02-21 00:26:45] 2025-02-21 05:26:44,585 [wrapper] ==== wrapper stderr END ====
[2025-02-21 00:26:45]  *** Error codes and diagnostics ***
[2025-02-21 00:26:45]     "exeErrorCode": 0,
[2025-02-21 00:26:45]     "exeErrorDiag": "",
[2025-02-21 00:26:45]     "pilotErrorCode": 0,
[2025-02-21 00:26:45]     "pilotErrorDiag": "",
[2025-02-21 00:26:45]  *** Listing of results directory ***
[2025-02-21 00:26:45] total 692072
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas    491065 Feb 20 00:27 pilot3.tar.gz
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas      5118 Feb 20 00:34 queuedata.json
[2025-02-21 00:26:45] -rwx------ 1 boincer umatlas     35865 Feb 20 00:36 runpilot2-wrapper.sh
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas       100 Feb 20 04:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-21 00:26:45] -rwxr-xr-x 1 boincer umatlas      7986 Feb 20 04:06 run_atlas
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas       105 Feb 20 04:06 job.xml
[2025-02-21 00:26:45] -rw-r--r-- 2 boincer umatlas 344821619 Feb 20 04:06 EVNT.43092757._001751.pool.root.1
[2025-02-21 00:26:45] drwxrwx--x 2 boincer umatlas      4096 Feb 20 04:06 shared
[2025-02-21 00:26:45] -rw-r--r-- 2 boincer umatlas    503554 Feb 20 04:06 input.tar.gz
[2025-02-21 00:26:45] -rw-r--r-- 2 boincer umatlas     17569 Feb 20 04:06 start_atlas.sh
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas         0 Feb 20 04:06 boinc_lockfile
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas      2545 Feb 20 04:07 pandaJob.out
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas       467 Feb 20 04:07 setup.sh.local
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas    987364 Feb 20 04:09 agis_schedconf.cvmfs.json
[2025-02-21 00:26:45] drwx------ 4 boincer umatlas      4096 Feb 20 04:10 pilot3
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas      6229 Feb 21 00:18 init_data.xml
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas 334037170 Feb 21 00:23 HITS.43205094._024599.pool.root.1
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas       533 Feb 21 00:23 boinc_task_state.xml
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas      1065 Feb 21 00:25 memory_monitor_summary.json
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas   1586690 Feb 21 00:25 agis_ddmendpoints.agis.ALL.json
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas   1215119 Feb 21 00:25 log.43205094._024599.job.log.tgz.1
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas        95 Feb 21 00:25 pilot_heartbeat.json
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas      7791 Feb 21 00:26 heartbeat.json
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas      8192 Feb 21 00:26 boinc_mmap_file
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas        29 Feb 21 00:26 wrapper_checkpoint.txt
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas      4215 Feb 21 00:26 pilotlog.txt
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas  11791517 Feb 21 00:26 log.43205094._024599.job.log.1
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas       357 Feb 21 00:26 output.list
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas       620 Feb 21 00:26 runtime_log
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas  13025280 Feb 21 00:26 result.tar.gz
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas       665 Feb 21 00:26 WjtLDmWPE56nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmpYpKDmkR1NHo.diag
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas     11416 Feb 21 00:26 runtime_log.err
[2025-02-21 00:26:45] -rw-r--r-- 1 boincer umatlas     21955 Feb 21 00:26 stderr.txt
[2025-02-21 00:26:45] HITS file was successfully produced:
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas 334037170 Feb 21 00:23 shared/HITS.pool.root.1
[2025-02-21 00:26:45]  *** Contents of shared directory: ***
[2025-02-21 00:26:45] total 676192
[2025-02-21 00:26:45] -rw-r--r-- 2 boincer umatlas 344821619 Feb 20 04:06 ATLAS.root_0
[2025-02-21 00:26:45] -rw-r--r-- 2 boincer umatlas    503554 Feb 20 04:06 input.tar.gz
[2025-02-21 00:26:45] -rw-r--r-- 2 boincer umatlas     17569 Feb 20 04:06 start_atlas.sh
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas 334037170 Feb 21 00:23 HITS.pool.root.1
[2025-02-21 00:26:45] -rw------- 1 boincer umatlas  13025280 Feb 21 00:26 result.tar.gz
00:26:47 (12922): run_atlas exited; CPU time 118489.174257
00:26:47 (12922): called boinc_finish(0)

</stderr_txt>
]]>

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