Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:49:25 (2763723): wrapper (7.7.26015): starting
08:49:25 (2763723): wrapper: running run_atlas (--nthreads 4)
[2025-02-22 08:49:25] Arguments: --nthreads 4
[2025-02-22 08:49:25] Threads: 4
[2025-02-22 08:49:25] Checking for CVMFS
[2025-02-22 08:49:25] No cvmfs_config command found, will try listing directly
[2025-02-22 08:49:25] CVMFS is ok
[2025-02-22 08:49:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-22 08:49:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-22 08:49:25] Further information can be found at the LHC@home message board.
[2025-02-22 08:49:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-22 08:49:25] Checking for apptainer binary...
[2025-02-22 08:49:25] which: no apptainer in ((null))
[2025-02-22 08:49:25] apptainer is not installed, using version from CVMFS
[2025-02-22 08:49:25] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-22 08:49:25] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot48/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2025-02-22 08:49:25] apptainer works
[2025-02-22 08:49:25] Set ATHENA_PROC_NUMBER=4
[2025-02-22 08:49:25] Set ATHENA_CORE_NUMBER=4
[2025-02-22 08:49:25] Starting ATLAS job with PandaID=6518835683
[2025-02-22 08:49:25] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot48/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-22 15:36:21]  *** The last 200 lines of the pilot log: ***
[2025-02-22 15:36:21] 2025-02-22 14:36:06,979 | INFO     | mean y: 2342599.4658227847
[2025-02-22 15:36:21] 2025-02-22 14:36:06,979 | INFO     | -- intersect: -19375276126.52115
[2025-02-22 15:36:21] 2025-02-22 14:36:06,979 | INFO     | intersect: -19375276126.52115
[2025-02-22 15:36:21] 2025-02-22 14:36:06,980 | INFO     | chi2: 3.8101767814306315
[2025-02-22 15:36:21] 2025-02-22 14:36:06,980 | INFO     | current chi2=3.8101767814306315 (change=16.736760832149898 %)
[2025-02-22 15:36:21] 2025-02-22 14:36:06,980 | INFO     | right removable region: 394
[2025-02-22 15:36:21] 2025-02-22 14:36:06,981 | INFO     | model: linear, x: [1740210909.0, 1740210970.0, 1740211031.0, 1740211092.0, 1740211153.0, 1740211214.0, 1740211275.0, 1740211336.0, 1740211397.0, 1740211458.0, 1740
[2025-02-22 15:36:21] 2025-02-22 14:36:06,982 | INFO     | sum of square deviations: 19110274590.0
[2025-02-22 15:36:21] 2025-02-22 14:36:06,987 | INFO     | sum of deviations: 96107618285.99998
[2025-02-22 15:36:21] 2025-02-22 14:36:06,987 | INFO     | mean x: 1740222926.0
[2025-02-22 15:36:21] 2025-02-22 14:36:06,987 | INFO     | mean y: 2357420.946835443
[2025-02-22 15:36:21] 2025-02-22 14:36:06,987 | INFO     | -- intersect: -8749410112.109528
[2025-02-22 15:36:21] 2025-02-22 14:36:06,987 | INFO     | intersect: -8749410112.109528
[2025-02-22 15:36:21] 2025-02-22 14:36:06,988 | INFO     | chi2: 2.2042057051144073
[2025-02-22 15:36:21] 2025-02-22 14:36:06,988 | INFO     | current chi2=2.2042057051144073 (change=51.83181323907768 %)
[2025-02-22 15:36:21] 2025-02-22 14:36:06,988 | INFO     | model: linear, x: [1740211214.0, 1740211275.0, 1740211336.0, 1740211397.0, 1740211458.0, 1740211519.0, 1740211580.0, 1740211641.0, 1740211702.0, 1740211763.0, 1740
[2025-02-22 15:36:21] 2025-02-22 14:36:06,989 | INFO     | sum of square deviations: 18393712317.5
[2025-02-22 15:36:21] 2025-02-22 14:36:06,992 | INFO     | sum of deviations: 22514289432.000004
[2025-02-22 15:36:21] 2025-02-22 14:36:06,992 | INFO     | mean x: 1740223078.5
[2025-02-22 15:36:21] 2025-02-22 14:36:06,993 | INFO     | mean y: 2373083.38974359
[2025-02-22 15:36:21] 2025-02-22 14:36:06,993 | INFO     | -- intersect: -2127696441.9620717
[2025-02-22 15:36:21] 2025-02-22 14:36:06,993 | INFO     | intersect: -2127696441.9620717
[2025-02-22 15:36:21] 2025-02-22 14:36:06,993 | INFO     | chi2: 0.8772407730055292
[2025-02-22 15:36:21] 2025-02-22 14:36:06,993 | INFO     | current chi2=0.8772407730055292 (change=60.201501567205284 %)
[2025-02-22 15:36:21] 2025-02-22 14:36:06,994 | INFO     | model: linear, x: [1740211519.0, 1740211580.0, 1740211641.0, 1740211702.0, 1740211763.0, 1740211824.0, 1740211885.0, 1740211946.0, 1740212007.0, 1740212068.0, 1740
[2025-02-22 15:36:21] 2025-02-22 14:36:06,994 | INFO     | sum of square deviations: 17695289920.0
[2025-02-22 15:36:21] 2025-02-22 14:36:06,998 | INFO     | sum of deviations: 6635633253.000004
[2025-02-22 15:36:21] 2025-02-22 14:36:06,998 | INFO     | mean x: 1740223231.0
[2025-02-22 15:36:21] 2025-02-22 14:36:06,998 | INFO     | mean y: 2376535.8623376624
[2025-02-22 15:36:21] 2025-02-22 14:36:06,998 | INFO     | -- intersect: -650197295.4494189
[2025-02-22 15:36:21] 2025-02-22 14:36:06,998 | INFO     | intersect: -650197295.4494189
[2025-02-22 15:36:21] 2025-02-22 14:36:06,999 | INFO     | chi2: 0.7941292467371989
[2025-02-22 15:36:21] 2025-02-22 14:36:06,999 | INFO     | current chi2=0.7941292467371989 (change=9.474197828673708 %)
[2025-02-22 15:36:21] 2025-02-22 14:36:06,999 | INFO     | left removable region: 30
[2025-02-22 15:36:21] 2025-02-22 14:36:06,999 | INFO     | model: linear, x: [1740212434.0, 1740212495.0, 1740212556.0, 1740212617.0, 1740212678.0, 1740212739.0, 1740212800.0, 1740212861.0, 1740212922.0, 1740212983.0, 1740
[2025-02-22 15:36:21] 2025-02-22 14:36:07,000 | INFO     | sum of square deviations: 14954754815.0
[2025-02-22 15:36:21] 2025-02-22 14:36:07,003 | INFO     | sum of deviations: 26770866412.500004
[2025-02-22 15:36:21] 2025-02-22 14:36:07,003 | INFO     | mean x: 1740223505.5
[2025-02-22 15:36:21] 2025-02-22 14:36:07,003 | INFO     | mean y: 2382777.425824176
[2025-02-22 15:36:21] 2025-02-22 14:36:07,004 | INFO     | -- intersect: -3112833190.334792
[2025-02-22 15:36:21] 2025-02-22 14:36:07,004 | INFO     | intersect: -3112833190.334792
[2025-02-22 15:36:21] 2025-02-22 14:36:07,004 | INFO     | chi2: 0.002175808800451874
[2025-02-22 15:36:21] 2025-02-22 14:36:07,004 | INFO     | -- intersect: -3112833190.334792
[2025-02-22 15:36:21] 2025-02-22 14:36:07,004 | INFO     | current memory leak: 1.79 B/s (using 364 data points, chi2=0.00)
[2025-02-22 15:36:21] 2025-02-22 14:36:07,005 | INFO     | ..............................
[2025-02-22 15:36:21] 2025-02-22 14:36:07,005 | INFO     | . Timing measurements:
[2025-02-22 15:36:21] 2025-02-22 14:36:07,005 | INFO     | . get job = 0 s
[2025-02-22 15:36:21] 2025-02-22 14:36:07,005 | INFO     | . initial setup = 1 s
[2025-02-22 15:36:21] 2025-02-22 14:36:07,006 | INFO     | . payload setup = 6 s
[2025-02-22 15:36:21] 2025-02-22 14:36:07,006 | INFO     | . stage-in = 0 s
[2025-02-22 15:36:21] 2025-02-22 14:36:07,006 | INFO     | . payload execution = 24355 s
[2025-02-22 15:36:21] 2025-02-22 14:36:07,006 | INFO     | . stage-out = 1 s
[2025-02-22 15:36:21] 2025-02-22 14:36:07,006 | INFO     | . log creation = 0 s
[2025-02-22 15:36:21] 2025-02-22 14:36:07,006 | INFO     | ..............................
[2025-02-22 15:36:21] 2025-02-22 14:36:07,118 | WARNING  | process 2774365 can no longer be monitored (due to stat problems) - aborting
[2025-02-22 15:36:21] 2025-02-22 14:36:07,118 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6518835683/memory_monitor_summary.json (trf name=prmon)
[2025-02-22 15:36:21] 2025-02-22 14:36:07,119 | INFO     | using path: /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6518835683/memory_monitor_summary.json (trf name=prmon)
[2025-02-22 15:36:21] 2025-02-22 14:36:07,120 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 2203802 B
[2025-02-22 15:36:21] 2025-02-22 14:36:07,120 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 17006 B
[2025-02-22 15:36:21] 2025-02-22 14:36:07,121 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2025-02-22 15:36:21] 2025-02-22 14:36:07,137 | INFO     | sufficient remaining disk space (643871801344 B)
[2025-02-22 15:36:21] 2025-02-22 14:36:07,138 | INFO     | work directory size check will use 2537553920 B as a max limit (10% grace limit added)
[2025-02-22 15:36:21] 2025-02-22 14:36:07,139 | INFO     | size of work directory /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6518835683: 2628789 B (within 2537553920 B limit)
[2025-02-22 15:36:21] 2025-02-22 14:36:07,139 | INFO     | pfn file=/scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6518835683/HITS.43205094._020759.pool.root.1 does not exist (skip from workdir size calculation)
[2025-02-22 15:36:21] 2025-02-22 14:36:07,139 | INFO     | total size of present files: 0 B (workdir size: 2628789 B)
[2025-02-22 15:36:21] 2025-02-22 14:36:07,140 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot48/slots/0/PanDA_Pilot-6518835683/HITS.43205094._020759.pool.root.1 since it does not exist
[2025-02-22 15:36:21] 2025-02-22 14:36:07,259 | INFO     | 
[2025-02-22 15:36:21] 2025-02-22 14:36:07,260 | INFO     | job summary report
[2025-02-22 15:36:21] 2025-02-22 14:36:07,260 | INFO     | --------------------------------------------------
[2025-02-22 15:36:21] 2025-02-22 14:36:07,260 | INFO     | PanDA job id: 6518835683
[2025-02-22 15:36:21] 2025-02-22 14:36:07,260 | INFO     | task id: 43205094
[2025-02-22 15:36:21] 2025-02-22 14:36:07,260 | INFO     | errors: (none)
[2025-02-22 15:36:21] 2025-02-22 14:36:07,260 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-22 15:36:21] 2025-02-22 14:36:07,260 | INFO     | pilot state: finished 
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | transexitcode: 0
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | exeerrorcode: 0
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | exeerrordiag: 
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | exitcode: 0
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | exitmsg: OK
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | cpuconsumptiontime: 93203 s
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | nevents: 400
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | neventsw: 0
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | pid: 2774365
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | pgrp: 2774365
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | corecount: 4
[2025-02-22 15:36:21] 2025-02-22 14:36:07,261 | INFO     | event service: False
[2025-02-22 15:36:21] 2025-02-22 14:36:07,262 | INFO     | sizes: {0: 2383372, 5: 2383578, 11: 2383634, 24365: 2418474, 24366: 2418473, 24369: 2427676, 24375: 2427790}
[2025-02-22 15:36:21] 2025-02-22 14:36:07,262 | INFO     | --------------------------------------------------
[2025-02-22 15:36:21] 2025-02-22 14:36:07,262 | INFO     | 
[2025-02-22 15:36:21] 2025-02-22 14:36:07,262 | INFO     | executing command: ls -lF /scratch/boinc/var/slot48/slots/0
[2025-02-22 15:36:21] 2025-02-22 14:36:07,283 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,289 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,293 | INFO     | number of running child processes to parent process 2774365: 1
[2025-02-22 15:36:21] 2025-02-22 14:36:07,293 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,294 | INFO     | maximum number of monitored processes: 6
[2025-02-22 15:36:21] 2025-02-22 14:36:07,294 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,294 | INFO     | aborting job monitoring since job object (job id=6518835683) has expired
[2025-02-22 15:36:21] 2025-02-22 14:36:07,295 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,295 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,295 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,295 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,295 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,295 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,295 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,296 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,296 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,296 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,296 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,296 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,296 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,296 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-22 15:36:21] 2025-02-22 14:36:07,296 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,296 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-22 15:36:21] 2025-02-22 14:36:07,296 | INFO     | job 6518835683 has completed (purged errors)
[2025-02-22 15:36:21] 2025-02-22 14:36:07,297 | INFO     | overall cleanup function is called
[2025-02-22 15:36:21] 2025-02-22 14:36:08,304 | INFO     | --- collectZombieJob: --- 10, [2774365]
[2025-02-22 15:36:21] 2025-02-22 14:36:08,304 | INFO     | zombie collector waiting for pid 2774365
[2025-02-22 15:36:21] 2025-02-22 14:36:08,305 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-22 15:36:21] 2025-02-22 14:36:08,305 | INFO     | collected zombie processes
[2025-02-22 15:36:21] 2025-02-22 14:36:08,305 | INFO     | will attempt to kill all subprocesses of pid=2774365
[2025-02-22 15:36:21] 2025-02-22 14:36:08,458 | INFO     | process IDs to be killed: [2774365] (in reverse order)
[2025-02-22 15:36:21] 2025-02-22 14:36:08,573 | WARNING  | found no corresponding commands to process id(s)
[2025-02-22 15:36:21] 2025-02-22 14:36:08,573 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-22 15:36:21] 2025-02-22 14:36:08,584 | INFO     | did not find any defunct processes belonging to 2774365
[2025-02-22 15:36:21] 2025-02-22 14:36:08,594 | INFO     | did not find any defunct processes belonging to 2774365
[2025-02-22 15:36:21] 2025-02-22 14:36:08,595 | INFO     | ready for new job
[2025-02-22 15:36:21] 2025-02-22 14:36:08,595 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-22 15:36:21] 2025-02-22 14:36:08,598 | INFO     | **************************************
[2025-02-22 15:36:21] 2025-02-22 14:36:08,598 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-22 15:36:21] 2025-02-22 14:36:08,598 | INFO     | **************************************
[2025-02-22 15:36:21] 2025-02-22 14:36:08,598 | INFO     | 
[2025-02-22 15:36:21] 2025-02-22 14:36:08,602 | INFO     | architecture information:
[2025-02-22 15:36:21] 2025-02-22 14:36:08,603 | INFO     | executing command: cat /etc/os-release
[2025-02-22 15:36:21] 2025-02-22 14:36:08,618 | INFO     | cat /etc/os-release:
[2025-02-22 15:36:21] NAME="CentOS Linux"
[2025-02-22 15:36:21] VERSION="7 (Core)"
[2025-02-22 15:36:21] ID="centos"
[2025-02-22 15:36:21] ID_LIKE="rhel fedora"
[2025-02-22 15:36:21] VERSION_ID="7"
[2025-02-22 15:36:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-22 15:36:21] ANSI_COLOR="0;31"
[2025-02-22 15:36:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-22 15:36:21] HOME_URL="https://www.centos.org/"
[2025-02-22 15:36:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-22 15:36:21] 
[2025-02-22 15:36:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-22 15:36:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-22 15:36:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-22 15:36:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-22 15:36:21] 
[2025-02-22 15:36:21] 2025-02-22 14:36:08,618 | INFO     | **************************************
[2025-02-22 15:36:21] 2025-02-22 14:36:08,748 | INFO     | 24394s have passed since pilot start
[2025-02-22 15:36:21] 2025-02-22 14:36:09,121 | INFO     | executing command: df -mP /scratch/boinc/var/slot48/slots/0
[2025-02-22 15:36:21] 2025-02-22 14:36:09,139 | INFO     | sufficient remaining disk space (643877044224 B)
[2025-02-22 15:36:21] 2025-02-22 14:36:09,140 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-22 15:36:21] 2025-02-22 14:36:09,140 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-22 15:36:21] 2025-02-22 14:36:09,140 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-22 15:36:21] 2025-02-22 14:36:09,141 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-22 15:36:21] 2025-02-22 14:36:09,141 | INFO     | aborting loop
[2025-02-22 15:36:21] 2025-02-22 14:36:09,315 | INFO     | all data control threads have been joined
[2025-02-22 15:36:21] 2025-02-22 14:36:09,486 | INFO     | all payload control threads have been joined
[2025-02-22 15:36:21] 2025-02-22 14:36:09,604 | INFO     | all job control threads have been joined
[2025-02-22 15:36:21] 2025-02-22 14:36:09,753 | INFO     | found 0 job(s) in 20 queues
[2025-02-22 15:36:21] 2025-02-22 14:36:09,754 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-22 15:36:21] 2025-02-22 14:36:09,754 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-22 15:36:21] 2025-02-22 14:36:10,145 | INFO     | [job] retrieve thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:10,146 | INFO     | [job] job monitor thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:10,314 | INFO     | [payload] validate_pre thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:10,321 | INFO     | [data] control thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:10,331 | INFO     | [payload] execute_payloads thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:10,491 | INFO     | [payload] control thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:10,610 | INFO     | [job] control thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:10,635 | INFO     | [payload] failed_post thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:10,776 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:10,887 | INFO     | [data] copytool_in thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:10,997 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-22 15:36:21] 2025-02-22 14:36:11,044 | INFO     | [job] validate thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:11,146 | INFO     | [data] copytool_out thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:11,336 | INFO     | [payload] validate_post thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:11,534 | INFO     | [job] create_data_payload thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:12,119 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-22 15:36:21] 2025-02-22 14:36:13,125 | INFO     | [job] queue monitor thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:15,002 | INFO     | [data] queue_monitor thread has finished
[2025-02-22 15:36:21] 2025-02-22 14:36:16,533 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23123988547392)>', '<ExcThread(monitor, started 23123736852224)>']
[2025-02-22 15:36:21] 2025-02-22 14:36:16,784 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-22 15:36:21] 2025-02-22 14:36:16,785 | INFO     | [monitor] control thread has ended
[2025-02-22 15:36:21] 2025-02-22 14:36:21,538 | INFO     | all workflow threads have been joined
[2025-02-22 15:36:21] 2025-02-22 14:36:21,538 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-22 15:36:21] 2025-02-22 14:36:21,538 | INFO     | traces error code: 0
[2025-02-22 15:36:21] 2025-02-22 14:36:21,539 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-22 15:36:21] 2025-02-22 14:36:21,697 [wrapper] ==== pilot stdout END ====
[2025-02-22 15:36:21] 2025-02-22 14:36:21,700 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-22 15:36:21] 2025-02-22 14:36:21,702 [wrapper] pilotpid: 2767417
[2025-02-22 15:36:21] 2025-02-22 14:36:21,704 [wrapper] Pilot exit status: 0
[2025-02-22 15:36:21] 2025-02-22 14:36:21,715 [wrapper] pandaids: 6518835683
[2025-02-22 15:36:21] 2025-02-22 14:36:21,777 [wrapper] cleanup supervisor_pilot 3618759 2767418
[2025-02-22 15:36:21] 2025-02-22 14:36:21,780 [wrapper] Test setup, not cleaning
[2025-02-22 15:36:21] 2025-02-22 14:36:21,785 [wrapper] apfmon messages muted
[2025-02-22 15:36:21] 2025-02-22 14:36:21,788 [wrapper] ==== wrapper stdout END ====
[2025-02-22 15:36:21] 2025-02-22 14:36:21,791 [wrapper] ==== wrapper stderr END ====
[2025-02-22 15:36:21]  *** Error codes and diagnostics ***
[2025-02-22 15:36:21]     "exeErrorCode": 0,
[2025-02-22 15:36:21]     "exeErrorDiag": "",
[2025-02-22 15:36:21]     "pilotErrorCode": 0,
[2025-02-22 15:36:21]     "pilotErrorDiag": "",
[2025-02-22 15:36:21]  *** Listing of results directory ***
[2025-02-22 15:36:21] total 677404
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc    491065 Feb 19 14:02 pilot3.tar.gz
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc      5118 Feb 19 14:06 queuedata.json
[2025-02-22 15:36:21] -rwx------ 1 boinc boinc     35865 Feb 19 14:07 runpilot2-wrapper.sh
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc       100 Feb 22 08:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-22 15:36:21] -rwxr-xr-x 1 boinc boinc      7986 Feb 22 08:49 run_atlas
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc       105 Feb 22 08:49 job.xml
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc      6634 Feb 22 08:49 init_data.xml
[2025-02-22 15:36:21] -rw-r--r-- 2 boinc boinc 342148323 Feb 22 08:49 EVNT.43092757._001606.pool.root.1
[2025-02-22 15:36:21] -rw-r--r-- 2 boinc boinc    503554 Feb 22 08:49 input.tar.gz
[2025-02-22 15:36:21] -rw-r--r-- 2 boinc boinc     17569 Feb 22 08:49 start_atlas.sh
[2025-02-22 15:36:21] drwxrwx--x 2 boinc boinc      4096 Feb 22 08:49 shared
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc         0 Feb 22 08:49 boinc_lockfile
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc      2549 Feb 22 08:49 pandaJob.out
[2025-02-22 15:36:21] -rw------- 1 boinc boinc       424 Feb 22 08:49 setup.sh.local
[2025-02-22 15:36:21] -rw------- 1 boinc boinc    988009 Feb 22 08:49 agis_schedconf.cvmfs.json
[2025-02-22 15:36:21] drwx------ 4 boinc boinc      4096 Feb 22 08:49 pilot3
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc       531 Feb 22 15:34 boinc_task_state.xml
[2025-02-22 15:36:21] -rw------- 1 boinc boinc 340803552 Feb 22 15:34 HITS.43205094._020759.pool.root.1
[2025-02-22 15:36:21] -rw------- 1 boinc boinc      1037 Feb 22 15:35 memory_monitor_summary.json
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc      8192 Feb 22 15:35 boinc_mmap_file
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc        28 Feb 22 15:35 wrapper_checkpoint.txt
[2025-02-22 15:36:21] -rw------- 1 boinc boinc   1582569 Feb 22 15:35 agis_ddmendpoints.agis.ALL.json
[2025-02-22 15:36:21] -rw------- 1 boinc boinc    473871 Feb 22 15:36 log.43205094._020759.job.log.tgz.1
[2025-02-22 15:36:21] -rw------- 1 boinc boinc        95 Feb 22 15:36 pilot_heartbeat.json
[2025-02-22 15:36:21] -rw------- 1 boinc boinc      7745 Feb 22 15:36 heartbeat.json
[2025-02-22 15:36:21] -rw------- 1 boinc boinc      4299 Feb 22 15:36 pilotlog.txt
[2025-02-22 15:36:21] -rw------- 1 boinc boinc   2975720 Feb 22 15:36 log.43205094._020759.job.log.1
[2025-02-22 15:36:21] -rw------- 1 boinc boinc       357 Feb 22 15:36 output.list
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc       620 Feb 22 15:36 runtime_log
[2025-02-22 15:36:21] -rw------- 1 boinc boinc   3471360 Feb 22 15:36 result.tar.gz
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc     11424 Feb 22 15:36 runtime_log.err
[2025-02-22 15:36:21] -rw------- 1 boinc boinc       665 Feb 22 15:36 CCtMDmDyy46nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmH5nKDmF2EBYm.diag
[2025-02-22 15:36:21] -rw-r--r-- 1 boinc boinc     21869 Feb 22 15:36 stderr.txt
[2025-02-22 15:36:21] HITS file was successfully produced:
[2025-02-22 15:36:21] -rw------- 1 boinc boinc 340803552 Feb 22 15:34 shared/HITS.pool.root.1
[2025-02-22 15:36:21]  *** Contents of shared directory: ***
[2025-02-22 15:36:21] total 670860
[2025-02-22 15:36:21] -rw-r--r-- 2 boinc boinc 342148323 Feb 22 08:49 ATLAS.root_0
[2025-02-22 15:36:21] -rw-r--r-- 2 boinc boinc    503554 Feb 22 08:49 input.tar.gz
[2025-02-22 15:36:21] -rw-r--r-- 2 boinc boinc     17569 Feb 22 08:49 start_atlas.sh
[2025-02-22 15:36:21] -rw------- 1 boinc boinc 340803552 Feb 22 15:34 HITS.pool.root.1
[2025-02-22 15:36:21] -rw------- 1 boinc boinc   3471360 Feb 22 15:36 result.tar.gz
15:36:23 (2763723): run_atlas exited; CPU time 93287.390325
15:36:23 (2763723): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN