Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:19:28 (1063393): wrapper (7.7.26015): starting
10:19:28 (1063393): wrapper: running run_atlas (--nthreads 4)
[2025-02-21 10:19:28] Arguments: --nthreads 4
[2025-02-21 10:19:28] Threads: 4
[2025-02-21 10:19:28] Checking for CVMFS
[2025-02-21 10:19:28] No cvmfs_config command found, will try listing directly
[2025-02-21 10:19:28] CVMFS is ok
[2025-02-21 10:19:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-21 10:19:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-21 10:19:28] Further information can be found at the LHC@home message board.
[2025-02-21 10:19:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-21 10:19:28] Checking for apptainer binary...
[2025-02-21 10:19:28] which: no apptainer in ((null))
[2025-02-21 10:19:28] apptainer is not installed, using version from CVMFS
[2025-02-21 10:19:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-21 10:19:29] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-02-21 10:19:29] apptainer works
[2025-02-21 10:19:29] Set ATHENA_PROC_NUMBER=4
[2025-02-21 10:19:29] Set ATHENA_CORE_NUMBER=4
[2025-02-21 10:19:29] Starting ATLAS job with PandaID=6518832380
[2025-02-21 10:19:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:46:57 (1259964): wrapper (7.7.26015): starting
11:46:57 (1259964): wrapper: running run_atlas (--nthreads 4)
[2025-02-21 11:46:57] Arguments: --nthreads 4
[2025-02-21 11:46:57] Threads: 4
[2025-02-21 11:46:57] This job has been restarted, cleaning up previous attempt
[2025-02-21 11:46:57] Checking for CVMFS
[2025-02-21 11:46:57] No cvmfs_config command found, will try listing directly
[2025-02-21 11:46:58] CVMFS is ok
[2025-02-21 11:46:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-21 11:46:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-21 11:46:58] Further information can be found at the LHC@home message board.
[2025-02-21 11:46:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-21 11:46:58] Checking for apptainer binary...
[2025-02-21 11:46:58] which: no apptainer in ((null))
[2025-02-21 11:46:58] apptainer is not installed, using version from CVMFS
[2025-02-21 11:46:58] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-21 11:46:58] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-02-21 11:46:58] apptainer works
[2025-02-21 11:46:58] Set ATHENA_PROC_NUMBER=4
[2025-02-21 11:46:58] Set ATHENA_CORE_NUMBER=4
[2025-02-21 11:46:58] Starting ATLAS job with PandaID=6518832380
[2025-02-21 11:46:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
12:24:12 (13020): wrapper (7.7.26015): starting
12:24:12 (13020): wrapper: running run_atlas (--nthreads 4)
[2025-02-21 12:24:12] Arguments: --nthreads 4
[2025-02-21 12:24:12] Threads: 4
[2025-02-21 12:24:12] This job has been restarted, cleaning up previous attempt
[2025-02-21 12:24:12] Checking for CVMFS
[2025-02-21 12:24:12] No cvmfs_config command found, will try listing directly
[2025-02-21 12:24:12] CVMFS is ok
[2025-02-21 12:24:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-02-21 12:24:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-02-21 12:24:12] Further information can be found at the LHC@home message board.
[2025-02-21 12:24:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-02-21 12:24:12] Checking for apptainer binary...
[2025-02-21 12:24:12] which: no apptainer in ((null))
[2025-02-21 12:24:12] apptainer is not installed, using version from CVMFS
[2025-02-21 12:24:12] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-02-21 12:24:12] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot36/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut03.grid.cesnet.cz
[2025-02-21 12:24:12] apptainer works
[2025-02-21 12:24:12] Set ATHENA_PROC_NUMBER=4
[2025-02-21 12:24:12] Set ATHENA_CORE_NUMBER=4
[2025-02-21 12:24:12] Starting ATLAS job with PandaID=6518832380
[2025-02-21 12:24:12] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot36/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-02-21 19:26:09]  *** The last 200 lines of the pilot log: ***
[2025-02-21 19:26:09] 2025-02-21 18:25:49,343 | INFO     | sum of deviations: 202128365604.00003
[2025-02-21 19:26:09] 2025-02-21 18:25:49,343 | INFO     | mean x: 1740149561.5
[2025-02-21 19:26:09] 2025-02-21 18:25:49,343 | INFO     | mean y: 2353355.8292682925
[2025-02-21 19:26:09] 2025-02-21 18:25:49,343 | INFO     | -- intersect: -16456001815.677698
[2025-02-21 19:26:09] 2025-02-21 18:25:49,343 | INFO     | intersect: -16456001815.677698
[2025-02-21 19:26:09] 2025-02-21 18:25:49,343 | INFO     | chi2: 4.301566711785279
[2025-02-21 19:26:09] 2025-02-21 18:25:49,344 | INFO     | current chi2=4.301566711785279 (change=15.524029632297534 %)
[2025-02-21 19:26:09] 2025-02-21 18:25:49,344 | INFO     | right removable region: 409
[2025-02-21 19:26:09] 2025-02-21 18:25:49,344 | INFO     | model: linear, x: [1740137392.0, 1740137453.0, 1740137514.0, 1740137575.0, 1740137636.0, 1740137697.0, 1740137758.0, 1740137819.0, 1740137880.0, 1740137941.0, 1740
[2025-02-21 19:26:09] 2025-02-21 18:25:49,345 | INFO     | sum of square deviations: 21371126282.5
[2025-02-21 19:26:09] 2025-02-21 18:25:49,349 | INFO     | sum of deviations: 75265107786.0
[2025-02-21 19:26:09] 2025-02-21 18:25:49,349 | INFO     | mean x: 1740149866.5
[2025-02-21 19:26:09] 2025-02-21 18:25:49,349 | INFO     | mean y: 2368313.0390243903
[2025-02-21 19:26:09] 2025-02-21 18:25:49,349 | INFO     | -- intersect: -6126113898.643213
[2025-02-21 19:26:09] 2025-02-21 18:25:49,349 | INFO     | intersect: -6126113898.643213
[2025-02-21 19:26:09] 2025-02-21 18:25:49,350 | INFO     | chi2: 2.509030566769196
[2025-02-21 19:26:09] 2025-02-21 18:25:49,350 | INFO     | current chi2=2.509030566769196 (change=50.726605906319286 %)
[2025-02-21 19:26:09] 2025-02-21 18:25:49,351 | INFO     | model: linear, x: [1740137697.0, 1740137758.0, 1740137819.0, 1740137880.0, 1740137941.0, 1740138002.0, 1740138063.0, 1740138124.0, 1740138185.0, 1740138246.0, 1740
[2025-02-21 19:26:09] 2025-02-21 18:25:49,351 | INFO     | sum of square deviations: 20598749010.0
[2025-02-21 19:26:09] 2025-02-21 18:25:49,354 | INFO     | sum of deviations: -8634945706.999989
[2025-02-21 19:26:09] 2025-02-21 18:25:49,355 | INFO     | mean x: 1740150019.0
[2025-02-21 19:26:09] 2025-02-21 18:25:49,355 | INFO     | mean y: 2384878.597530864
[2025-02-21 19:26:09] 2025-02-21 18:25:49,355 | INFO     | -- intersect: 731851552.9477708
[2025-02-21 19:26:09] 2025-02-21 18:25:49,355 | INFO     | intersect: 731851552.9477708
[2025-02-21 19:26:09] 2025-02-21 18:25:49,355 | INFO     | chi2: 0.8918654742371277
[2025-02-21 19:26:09] 2025-02-21 18:25:49,356 | INFO     | current chi2=0.8918654742371277 (change=64.45378202842876 %)
[2025-02-21 19:26:09] 2025-02-21 18:25:49,356 | INFO     | model: linear, x: [1740138002.0, 1740138063.0, 1740138124.0, 1740138185.0, 1740138246.0, 1740138307.0, 1740138368.0, 1740138429.0, 1740138490.0, 1740138551.0, 1740
[2025-02-21 19:26:09] 2025-02-21 18:25:49,356 | INFO     | sum of square deviations: 19845209300.0
[2025-02-21 19:26:09] 2025-02-21 18:25:49,360 | INFO     | sum of deviations: -22572317756.000004
[2025-02-21 19:26:09] 2025-02-21 18:25:49,360 | INFO     | mean x: 1740150171.5
[2025-02-21 19:26:09] 2025-02-21 18:25:49,360 | INFO     | mean y: 2387687.82
[2025-02-21 19:26:09] 2025-02-21 18:25:49,360 | INFO     | -- intersect: 1981667524.100482
[2025-02-21 19:26:09] 2025-02-21 18:25:49,360 | INFO     | intersect: 1981667524.100482
[2025-02-21 19:26:09] 2025-02-21 18:25:49,361 | INFO     | chi2: 0.8285694910531791
[2025-02-21 19:26:09] 2025-02-21 18:25:49,361 | INFO     | current chi2=0.8285694910531791 (change=7.097032569636119 %)
[2025-02-21 19:26:09] 2025-02-21 18:25:49,361 | INFO     | left removable region: 30
[2025-02-21 19:26:09] 2025-02-21 18:25:49,362 | INFO     | model: linear, x: [1740138917.0, 1740138978.0, 1740139039.0, 1740139100.0, 1740139161.0, 1740139222.0, 1740139283.0, 1740139344.0, 1740139405.0, 1740139466.0, 1740
[2025-02-21 19:26:09] 2025-02-21 18:25:49,362 | INFO     | sum of square deviations: 16880800230.0
[2025-02-21 19:26:09] 2025-02-21 18:25:49,365 | INFO     | sum of deviations: -5519673754.999999
[2025-02-21 19:26:09] 2025-02-21 18:25:49,366 | INFO     | mean x: 1740150446.0
[2025-02-21 19:26:09] 2025-02-21 18:25:49,366 | INFO     | mean y: 2395055.868073879
[2025-02-21 19:26:09] 2025-02-21 18:25:49,366 | INFO     | -- intersect: 571388386.4963187
[2025-02-21 19:26:09] 2025-02-21 18:25:49,366 | INFO     | intersect: 571388386.4963187
[2025-02-21 19:26:09] 2025-02-21 18:25:49,366 | INFO     | chi2: 0.004934971507349292
[2025-02-21 19:26:09] 2025-02-21 18:25:49,367 | INFO     | -- intersect: 571388386.4963187
[2025-02-21 19:26:09] 2025-02-21 18:25:49,367 | INFO     | current memory leak: -0.33 B/s (using 379 data points, chi2=0.00)
[2025-02-21 19:26:09] 2025-02-21 18:25:49,367 | INFO     | ..............................
[2025-02-21 19:26:09] 2025-02-21 18:25:49,368 | INFO     | . Timing measurements:
[2025-02-21 19:26:09] 2025-02-21 18:25:49,368 | INFO     | . get job = 0 s
[2025-02-21 19:26:09] 2025-02-21 18:25:49,368 | INFO     | . initial setup = 0 s
[2025-02-21 19:26:09] 2025-02-21 18:25:49,368 | INFO     | . payload setup = 4 s
[2025-02-21 19:26:09] 2025-02-21 18:25:49,368 | INFO     | . stage-in = 0 s
[2025-02-21 19:26:09] 2025-02-21 18:25:49,368 | INFO     | . payload execution = 25262 s
[2025-02-21 19:26:09] 2025-02-21 18:25:49,368 | INFO     | . stage-out = 1 s
[2025-02-21 19:26:09] 2025-02-21 18:25:49,368 | INFO     | . log creation = 0 s
[2025-02-21 19:26:09] 2025-02-21 18:25:49,368 | INFO     | ..............................
[2025-02-21 19:26:09] 2025-02-21 18:25:49,463 | INFO     | 
[2025-02-21 19:26:09] 2025-02-21 18:25:49,463 | INFO     | job summary report
[2025-02-21 19:26:09] 2025-02-21 18:25:49,463 | INFO     | --------------------------------------------------
[2025-02-21 19:26:09] 2025-02-21 18:25:49,463 | INFO     | PanDA job id: 6518832380
[2025-02-21 19:26:09] 2025-02-21 18:25:49,463 | INFO     | task id: 43205075
[2025-02-21 19:26:09] 2025-02-21 18:25:49,463 | INFO     | errors: (none)
[2025-02-21 19:26:09] 2025-02-21 18:25:49,463 | INFO     | status: LOG_TRANSFER = DONE 
[2025-02-21 19:26:09] 2025-02-21 18:25:49,463 | INFO     | pilot state: finished 
[2025-02-21 19:26:09] 2025-02-21 18:25:49,463 | INFO     | transexitcode: 0
[2025-02-21 19:26:09] 2025-02-21 18:25:49,463 | INFO     | exeerrorcode: 0
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | exeerrordiag: 
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | exitcode: 0
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | exitmsg: OK
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | cpuconsumptiontime: 95976 s
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | nevents: 400
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | neventsw: 0
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | pid: 177097
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | pgrp: 177097
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | corecount: 4
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | event service: False
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | sizes: {0: 2383211, 1: 2383410, 4: 2383616, 11: 2383644, 25268: 2418739, 25269: 2427702, 25270: 2427886, 25273: 2428056}
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | --------------------------------------------------
[2025-02-21 19:26:09] 2025-02-21 18:25:49,464 | INFO     | 
[2025-02-21 19:26:09] 2025-02-21 18:25:49,465 | INFO     | executing command: ls -lF /scratch/boinc/var/slot36/slots/0
[2025-02-21 19:26:09] 2025-02-21 18:25:49,479 | INFO     | queue jobs had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,479 | INFO     | queue payloads had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,479 | INFO     | queue data_in had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,479 | INFO     | queue data_out had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,479 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,479 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,479 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue completed_jobids has 1 job(s)
[2025-02-21 19:26:09] 2025-02-21 18:25:49,480 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,481 | INFO     | queue messages had 0 job(s) [purged]
[2025-02-21 19:26:09] 2025-02-21 18:25:49,481 | INFO     | job 6518832380 has completed (purged errors)
[2025-02-21 19:26:09] 2025-02-21 18:25:49,481 | INFO     | overall cleanup function is called
[2025-02-21 19:26:09] 2025-02-21 18:25:50,489 | INFO     | --- collectZombieJob: --- 10, [177097]
[2025-02-21 19:26:09] 2025-02-21 18:25:50,489 | INFO     | zombie collector waiting for pid 177097
[2025-02-21 19:26:09] 2025-02-21 18:25:50,489 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-02-21 19:26:09] 2025-02-21 18:25:50,489 | INFO     | collected zombie processes
[2025-02-21 19:26:09] 2025-02-21 18:25:50,489 | INFO     | will attempt to kill all subprocesses of pid=177097
[2025-02-21 19:26:09] 2025-02-21 18:25:50,588 | INFO     | process IDs to be killed: [177097] (in reverse order)
[2025-02-21 19:26:09] 2025-02-21 18:25:50,682 | WARNING  | found no corresponding commands to process id(s)
[2025-02-21 19:26:09] 2025-02-21 18:25:50,683 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-02-21 19:26:09] 2025-02-21 18:25:50,689 | INFO     | did not find any defunct processes belonging to 177097
[2025-02-21 19:26:09] 2025-02-21 18:25:50,695 | INFO     | did not find any defunct processes belonging to 177097
[2025-02-21 19:26:09] 2025-02-21 18:25:50,696 | INFO     | ready for new job
[2025-02-21 19:26:09] 2025-02-21 18:25:50,696 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-02-21 19:26:09] 2025-02-21 18:25:50,698 | INFO     | **************************************
[2025-02-21 19:26:09] 2025-02-21 18:25:50,698 | INFO     | ***  PanDA Pilot version 3.9.4.15  ***
[2025-02-21 19:26:09] 2025-02-21 18:25:50,698 | INFO     | **************************************
[2025-02-21 19:26:09] 2025-02-21 18:25:50,698 | INFO     | 
[2025-02-21 19:26:09] 2025-02-21 18:25:50,700 | INFO     | architecture information:
[2025-02-21 19:26:09] 2025-02-21 18:25:50,701 | INFO     | executing command: cat /etc/os-release
[2025-02-21 19:26:09] 2025-02-21 18:25:50,710 | INFO     | cat /etc/os-release:
[2025-02-21 19:26:09] NAME="CentOS Linux"
[2025-02-21 19:26:09] VERSION="7 (Core)"
[2025-02-21 19:26:09] ID="centos"
[2025-02-21 19:26:09] ID_LIKE="rhel fedora"
[2025-02-21 19:26:09] VERSION_ID="7"
[2025-02-21 19:26:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-02-21 19:26:09] ANSI_COLOR="0;31"
[2025-02-21 19:26:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-02-21 19:26:09] HOME_URL="https://www.centos.org/"
[2025-02-21 19:26:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-02-21 19:26:09] 
[2025-02-21 19:26:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-02-21 19:26:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-02-21 19:26:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-02-21 19:26:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-02-21 19:26:09] 
[2025-02-21 19:26:09] 2025-02-21 18:25:50,710 | INFO     | **************************************
[2025-02-21 19:26:09] 2025-02-21 18:25:50,759 | WARNING  | process 177097 can no longer be monitored (due to stat problems) - aborting
[2025-02-21 19:26:09] 2025-02-21 18:25:50,952 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-02-21 19:26:09] 2025-02-21 18:25:50,953 | INFO     | using path: /scratch/boinc/var/slot36/slots/0/memory_monitor_summary.json (trf name=prmon)
[2025-02-21 19:26:09] 2025-02-21 18:25:50,954 | INFO     | skipping file size check of payload stdout file (/scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6518832380/payload.stdout) since it has not been created yet
[2025-02-21 19:26:09] 2025-02-21 18:25:50,954 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-02-21 19:26:09] 2025-02-21 18:25:50,964 | INFO     | sufficient remaining disk space (654325055488 B)
[2025-02-21 19:26:09] 2025-02-21 18:25:50,964 | WARNING  | skipping size check of workdir since it has not been created yet
[2025-02-21 19:26:09] 2025-02-21 18:25:50,964 | INFO     | output file size check: skipping output file /scratch/boinc/var/slot36/slots/0/PanDA_Pilot-6518832380/HITS.43205075._049164.pool.root.1 since it does not exist
[2025-02-21 19:26:09] 2025-02-21 18:25:51,061 | INFO     | number of running child processes to parent process 177097: 1
[2025-02-21 19:26:09] 2025-02-21 18:25:51,062 | INFO     | maximum number of monitored processes: 6
[2025-02-21 19:26:09] 2025-02-21 18:25:51,062 | INFO     | aborting job monitoring since job object (job id=6518832380) has expired
[2025-02-21 19:26:09] 2025-02-21 18:25:51,212 | INFO     | executing command: df -mP /scratch/boinc/var/slot36/slots/0
[2025-02-21 19:26:09] 2025-02-21 18:25:51,225 | INFO     | sufficient remaining disk space (654325055488 B)
[2025-02-21 19:26:09] 2025-02-21 18:25:51,225 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-02-21 19:26:09] 2025-02-21 18:25:51,226 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-02-21 19:26:09] 2025-02-21 18:25:51,226 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-02-21 19:26:09] 2025-02-21 18:25:51,226 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-02-21 19:26:09] 2025-02-21 18:25:51,227 | INFO     | will abort loop
[2025-02-21 19:26:09] 2025-02-21 18:25:51,382 | INFO     | PID=72058 has CPU usage=9.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-02-21 19:26:09] 2025-02-21 18:25:51,382 | INFO     | .. there are 14 such processes running
[2025-02-21 19:26:09] 2025-02-21 18:25:51,382 | INFO     | found 0 job(s) in 20 queues
[2025-02-21 19:26:09] 2025-02-21 18:25:51,382 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-02-21 19:26:09] 2025-02-21 18:25:51,382 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-02-21 19:26:09] 2025-02-21 18:25:51,498 | INFO     | all data control threads have been joined
[2025-02-21 19:26:09] 2025-02-21 18:25:51,548 | INFO     | all job control threads have been joined
[2025-02-21 19:26:09] 2025-02-21 18:25:51,673 | INFO     | all payload control threads have been joined
[2025-02-21 19:26:09] 2025-02-21 18:25:51,823 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-02-21 19:26:09] 2025-02-21 18:25:52,227 | INFO     | [job] queue monitor thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:52,230 | INFO     | [job] retrieve thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:52,231 | INFO     | [payload] validate_pre thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:52,232 | INFO     | [job] job monitor thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:52,333 | INFO     | [job] create_data_payload thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:52,412 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-02-21 19:26:09] 2025-02-21 18:25:52,502 | INFO     | [data] control thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:52,554 | INFO     | [job] control thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:52,640 | INFO     | [payload] validate_post thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:52,678 | INFO     | [payload] control thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:53,242 | INFO     | [payload] failed_post thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:53,267 | INFO     | [payload] execute_payloads thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:53,509 | INFO     | [job] validate thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:53,517 | INFO     | [data] copytool_in thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:53,828 | INFO     | [data] copytool_out thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:25:56,417 | INFO     | [data] queue_monitor thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:26:01,746 | INFO     | job.realtimelogging is not enabled
[2025-02-21 19:26:09] 2025-02-21 18:26:02,752 | INFO     | [payload] run_realtimelog thread has finished
[2025-02-21 19:26:09] 2025-02-21 18:26:04,331 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22737624323904)>', '<ExcThread(monitor, started 22737382745856)>']
[2025-02-21 19:26:09] 2025-02-21 18:26:04,447 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-02-21 19:26:09] 2025-02-21 18:26:04,448 | INFO     | [monitor] control thread has ended
[2025-02-21 19:26:09] 2025-02-21 18:26:09,342 | INFO     | all workflow threads have been joined
[2025-02-21 19:26:09] 2025-02-21 18:26:09,342 | INFO     | end of generic workflow (traces error code: 0)
[2025-02-21 19:26:09] 2025-02-21 18:26:09,342 | INFO     | traces error code: 0
[2025-02-21 19:26:09] 2025-02-21 18:26:09,343 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-02-21 19:26:09] 2025-02-21 18:26:09,474 [wrapper] ==== pilot stdout END ====
[2025-02-21 19:26:09] 2025-02-21 18:26:09,477 [wrapper] ==== wrapper stdout RESUME ====
[2025-02-21 19:26:09] 2025-02-21 18:26:09,479 [wrapper] pilotpid: 72058
[2025-02-21 19:26:09] 2025-02-21 18:26:09,481 [wrapper] Pilot exit status: 0
[2025-02-21 19:26:09] 2025-02-21 18:26:09,486 [wrapper] pandaids: 6518832380 6518832380 6518832380
[2025-02-21 19:26:09] 2025-02-21 18:26:09,526 [wrapper] cleanup supervisor_pilot 1030608 72060
[2025-02-21 19:26:09] 2025-02-21 18:26:09,528 [wrapper] Test setup, not cleaning
[2025-02-21 19:26:09] 2025-02-21 18:26:09,531 [wrapper] apfmon messages muted
[2025-02-21 19:26:09] 2025-02-21 18:26:09,533 [wrapper] ==== wrapper stdout END ====
[2025-02-21 19:26:09] 2025-02-21 18:26:09,535 [wrapper] ==== wrapper stderr END ====
[2025-02-21 19:26:09]  *** Error codes and diagnostics ***
[2025-02-21 19:26:09]     "exeErrorCode": 0,
[2025-02-21 19:26:09]     "exeErrorDiag": "",
[2025-02-21 19:26:09]     "pilotErrorCode": 0,
[2025-02-21 19:26:09]     "pilotErrorDiag": "",
[2025-02-21 19:26:09]  *** Listing of results directory ***
[2025-02-21 19:26:09] total 1003952
[2025-02-21 19:26:09] drwx------ 4 boinc boinc      4096 Dec 18 12:03 pilot3
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc    491065 Feb 19 11:33 pilot3.tar.gz
[2025-02-21 19:26:09] -rwx------ 1 boinc boinc     35865 Feb 19 11:36 runpilot2-wrapper.sh
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc      5118 Feb 19 11:36 queuedata.json
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc       100 Feb 21 10:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-02-21 19:26:09] -rwxr-xr-x 1 boinc boinc      7986 Feb 21 10:19 run_atlas
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc       105 Feb 21 10:19 job.xml
[2025-02-21 19:26:09] -rw-r--r-- 3 boinc boinc 343359730 Feb 21 10:19 EVNT.43092757._001124.pool.root.1
[2025-02-21 19:26:09] -rw-r--r-- 3 boinc boinc 343359730 Feb 21 10:19 ATLAS.root_0
[2025-02-21 19:26:09] -rw-r--r-- 2 boinc boinc     17569 Feb 21 10:19 start_atlas.sh
[2025-02-21 19:26:09] drwxrwx--x 2 boinc boinc      4096 Feb 21 10:19 shared
[2025-02-21 19:26:09] -rw-r--r-- 2 boinc boinc    503547 Feb 21 10:19 input.tar.gz
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc         0 Feb 21 10:19 boinc_lockfile
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc      2558 Feb 21 12:24 pandaJob.out
[2025-02-21 19:26:09] -rw------- 1 boinc boinc       424 Feb 21 12:24 setup.sh.local
[2025-02-21 19:26:09] -rw------- 1 boinc boinc    991368 Feb 21 12:24 agis_schedconf.cvmfs.json
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc      6642 Feb 21 16:20 init_data.xml
[2025-02-21 19:26:09] -rw------- 1 boinc boinc        96 Feb 21 19:24 pilot_heartbeat.json
[2025-02-21 19:26:09] -rw------- 1 boinc boinc 330790733 Feb 21 19:25 HITS.43205075._049164.pool.root.1
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc       532 Feb 21 19:25 boinc_task_state.xml
[2025-02-21 19:26:09] -rw------- 1 boinc boinc      1046 Feb 21 19:25 memory_monitor_summary.json
[2025-02-21 19:26:09] -rw------- 1 boinc boinc   1582569 Feb 21 19:25 agis_ddmendpoints.agis.ALL.json
[2025-02-21 19:26:09] -rw------- 1 boinc boinc    476394 Feb 21 19:25 log.43205075._049164.job.log.tgz.1
[2025-02-21 19:26:09] -rw------- 1 boinc boinc      7767 Feb 21 19:25 heartbeat.json
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc        29 Feb 21 19:26 wrapper_checkpoint.txt
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc      8192 Feb 21 19:26 boinc_mmap_file
[2025-02-21 19:26:09] -rw------- 1 boinc boinc      6023 Feb 21 19:26 pilotlog.txt
[2025-02-21 19:26:09] -rw------- 1 boinc boinc   2882237 Feb 21 19:26 log.43205075._049164.job.log.1
[2025-02-21 19:26:09] -rw------- 1 boinc boinc       357 Feb 21 19:26 output.list
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc       620 Feb 21 19:26 runtime_log
[2025-02-21 19:26:09] -rw------- 1 boinc boinc   3379200 Feb 21 19:26 result.tar.gz
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc     11501 Feb 21 19:26 runtime_log.err
[2025-02-21 19:26:09] -rw------- 1 boinc boinc       920 Feb 21 19:26 OoyMDmhcw46n9Rq4apOajLDm4fhM0noT9bVoFjIUDmsPaKDmcLzzQo.diag
[2025-02-21 19:26:09] -rw-r--r-- 1 boinc boinc     25537 Feb 21 19:26 stderr.txt
[2025-02-21 19:26:09] HITS file was successfully produced:
[2025-02-21 19:26:09] -rw------- 1 boinc boinc 330790733 Feb 21 19:25 shared/HITS.pool.root.1
[2025-02-21 19:26:09]  *** Contents of shared directory: ***
[2025-02-21 19:26:09] total 662172
[2025-02-21 19:26:09] -rw-r--r-- 3 boinc boinc 343359730 Feb 21 10:19 ATLAS.root_0
[2025-02-21 19:26:09] -rw-r--r-- 2 boinc boinc     17569 Feb 21 10:19 start_atlas.sh
[2025-02-21 19:26:09] -rw-r--r-- 2 boinc boinc    503547 Feb 21 10:19 input.tar.gz
[2025-02-21 19:26:09] -rw------- 1 boinc boinc 330790733 Feb 21 19:25 HITS.pool.root.1
[2025-02-21 19:26:09] -rw------- 1 boinc boinc   3379200 Feb 21 19:26 result.tar.gz
19:26:11 (13020): run_atlas exited; CPU time 96068.155686
19:26:11 (13020): called boinc_finish(0)

</stderr_txt>
]]>

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