Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-17 18:35:53 (3216): Detected: vboxwrapper 26206
2025-02-17 18:35:53 (3216): Detected: BOINC client v8.0.2
2025-02-17 18:35:53 (3216): Detected: VirtualBox VboxManage Interface (Version: 6.1.36)
2025-02-17 18:35:54 (3216): Successfully copied 'init_data.xml' to the shared directory.
2025-02-17 18:35:54 (3216): Create VM. (boinc_eb9b159673be4d96, slot#0)
2025-02-17 18:35:55 (3216): Setting Memory Size for VM. (4200MB)
2025-02-17 18:35:55 (3216): Setting CPU Count for VM. (2)
2025-02-17 18:35:55 (3216): Setting Chipset Options for VM.
2025-02-17 18:35:56 (3216): Setting Graphics Controller Options for VM.
2025-02-17 18:35:56 (3216): Setting Boot Options for VM.
2025-02-17 18:35:56 (3216): Setting Network Configuration for NAT.
2025-02-17 18:35:57 (3216): Enabling VM Network Access.
2025-02-17 18:35:57 (3216): Disabling USB Support for VM.
2025-02-17 18:35:57 (3216): Disabling COM Port Support for VM.
2025-02-17 18:35:58 (3216): Disabling LPT Port Support for VM.
2025-02-17 18:35:58 (3216): Disabling Audio Support for VM.
2025-02-17 18:35:58 (3216): Disabling Clipboard Support for VM.
2025-02-17 18:35:59 (3216): Disabling Drag and Drop Support for VM.
2025-02-17 18:35:59 (3216): Adding storage controller(s) to VM.
2025-02-17 18:35:59 (3216): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-17 18:36:00 (3216): Adding VirtualBox Guest Additions to VM.
2025-02-17 18:36:00 (3216): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-17 18:36:01 (3216): forwarding host port 60822 to guest port 80
2025-02-17 18:36:01 (3216): Enabling remote desktop for VM.
2025-02-17 18:36:02 (3216): Enabling shared directory for VM.
2025-02-17 18:36:02 (3216): Starting VM using VBoxManage interface. (boinc_eb9b159673be4d96, slot#0)
2025-02-17 18:36:08 (3216): Successfully started VM. (PID = '10684')
2025-02-17 18:36:08 (3216): Reporting VM Process ID to BOINC.
2025-02-17 18:36:08 (3216): Guest Log: BIOS: VirtualBox 6.1.36
2025-02-17 18:36:08 (3216): Guest Log: CPUID EDX: 0x178bfbff
2025-02-17 18:36:08 (3216): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-17 18:36:08 (3216): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-17 18:36:08 (3216): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-17 18:36:08 (3216): Detected: Web Application Enabled (http://localhost:60822)
2025-02-17 18:36:08 (3216): Detected: Remote Desktop Enabled (localhost:60823)
2025-02-17 18:36:08 (3216): Preference change detected
2025-02-17 18:36:08 (3216): Setting CPU throttle for VM. (100%)
2025-02-17 18:36:08 (3216): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-17 18:36:10 (3216): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-17 18:36:10 (3216): Guest Log: BIOS: Booting from Hard Disk...
2025-02-17 18:36:13 (3216): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-17 18:36:13 (3216): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-17 18:36:13 (3216): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-17 18:36:19 (3216): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-17 18:36:19 (3216): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-17 18:36:26 (3216): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-17 18:36:26 (3216): Guest Log: 00:00:00.000177 main     Log opened 2025-02-17T18:36:24.086797000Z
2025-02-17 18:36:26 (3216): Guest Log: 00:00:00.000319 main     OS Product: Linux
2025-02-17 18:36:26 (3216): Guest Log: 00:00:00.000371 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-17 18:36:26 (3216): Guest Log: 00:00:00.000416 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-17 18:36:26 (3216): Guest Log: 00:00:00.000460 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-17 18:36:26 (3216): Guest Log: 00:00:00.000461 main     Process ID: 1259
2025-02-17 18:36:26 (3216): Guest Log: 00:00:00.000462 main     Package type: LINUX_64BITS_GENERIC
2025-02-17 18:36:26 (3216): Guest Log: 00:00:00.001710 main     5.2.32 r132073 started. Verbose level = 0
2025-02-17 18:36:26 (3216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-17 18:36:26 (3216): Guest Log: [INFO] Mounting shared directory
2025-02-17 18:36:26 (3216): Guest Log: [INFO] Checking for init_data.xml
2025-02-17 18:36:29 (3216): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-17 18:36:29 (3216): Guest Log: [INFO] Detected branch: prod
2025-02-17 18:36:29 (3216): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-17 18:36:29 (3216): Guest Log: Copying input files
2025-02-17 18:36:31 (3216): Guest Log: Copied input files into RunAtlas.
2025-02-17 18:36:31 (3216): Guest Log: Detected user-configured HTTP proxy at http://192.168.35.184:3128 - will set in /etc/cvmfs/default.local
2025-02-17 18:36:36 (3216): Guest Log: 00:00:10.005205 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 529 594 000ns (GuestNow=1 739 813 795 561 588 000 ns GuestLast=1 739 817 384 091 182 000 ns fSetTimeLastLoop=true )
2025-02-17 18:36:38 (3216): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-17 18:36:38 (3216): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-17 18:36:38 (3216): Guest Log: 2.6.3.0 1530 0 29592 142757 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.35.184:3128 1
2025-02-17 18:36:40 (3216): Guest Log: copied the webapp to /var/www
2025-02-17 18:36:40 (3216): Guest Log: ATHENA_PROC_NUMBER=2
2025-02-17 18:36:40 (3216): Guest Log: ATHENA_CORE_NUMBER=2
2025-02-17 18:36:40 (3216): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-17 18:36:40 (3216): Guest Log:  *** Starting ATLAS job. (PandaID=6513728812 taskID=43078919) ***
2025-02-17 20:16:18 (3216): Status Report: Elapsed Time: '6000.000000'
2025-02-17 20:16:18 (3216): Status Report: CPU Time: '11099.751952'
2025-02-17 21:56:21 (3216): Status Report: Elapsed Time: '12000.000000'
2025-02-17 21:56:21 (3216): Status Report: CPU Time: '23093.327233'
2025-02-17 23:36:23 (3216): Status Report: Elapsed Time: '18000.000000'
2025-02-17 23:36:23 (3216): Status Report: CPU Time: '35087.230117'
2025-02-18 01:16:27 (3216): Status Report: Elapsed Time: '24000.000000'
2025-02-18 01:16:27 (3216): Status Report: CPU Time: '47083.644616'
2025-02-18 02:56:31 (3216): Status Report: Elapsed Time: '30000.000000'
2025-02-18 02:56:31 (3216): Status Report: CPU Time: '59081.556725'
2025-02-18 04:36:38 (3216): Status Report: Elapsed Time: '36000.000000'
2025-02-18 04:36:38 (3216): Status Report: CPU Time: '71086.582480'
2025-02-18 06:16:45 (3216): Status Report: Elapsed Time: '42000.000000'
2025-02-18 06:16:45 (3216): Status Report: CPU Time: '83088.737817'
2025-02-18 07:57:01 (3216): Status Report: Elapsed Time: '48000.000000'
2025-02-18 07:57:01 (3216): Status Report: CPU Time: '95073.889044'
2025-02-18 08:23:35 (3216): Guest Log:  *** Job finished ***
2025-02-18 08:23:35 (3216): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:20,563 | INFO     | [data] queue_monitor thread has finished
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:27,571 | INFO     | job.realtimelogging is not enabled
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:28,572 | INFO     | [payload] run_realtimelog thread has finished
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:29,236 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140433946924864)>', '<ExcThread(monitor, started 140433636169472)>']
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:29,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:29,302 | INFO     | [monitor] control thread has ended
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,238 | INFO     | all workflow threads have been joined
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,238 | INFO     | end of generic workflow (traces error code: 0)
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,238 | INFO     | traces error code: 0
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,238 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,348 [wrapper] ==== pilot stdout END ====
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,353 [wrapper] ==== wrapper stdout RESUME ====
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,358 [wrapper] pilotpid: 5835
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,363 [wrapper] Pilot exit status: 0
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,405 [wrapper] pandaids: 6513728812
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,435 [wrapper] cleanup supervisor_pilot 13262 5836
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,441 [wrapper] Test setup, not cleaning
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,451 [wrapper] apfmon messages muted
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,456 [wrapper] ==== wrapper stdout END ====
2025-02-18 08:23:35 (3216): Guest Log: 2025-02-18 07:23:34,462 [wrapper] ==== wrapper stderr END ====
2025-02-18 08:23:35 (3216): Guest Log:  *** Error codes and diagnostics ***
2025-02-18 08:23:35 (3216): Guest Log:     "exeErrorCode": 0,
2025-02-18 08:23:35 (3216): Guest Log:     "exeErrorDiag": "",
2025-02-18 08:23:35 (3216): Guest Log:     "pilotErrorCode": 0,
2025-02-18 08:23:35 (3216): Guest Log:     "pilotErrorDiag": "",
2025-02-18 08:23:35 (3216): Guest Log:  *** Listing of results directory ***
2025-02-18 08:23:35 (3216): Guest Log: total 346692
2025-02-18 08:23:35 (3216): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 15 03:39 pilot3.tar.gz
2025-02-18 08:23:35 (3216): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 15 03:42 queuedata.json
2025-02-18 08:23:35 (3216): Guest Log: -rwx------. 1 atlas atlas     34964 Feb 15 03:43 runpilot2-wrapper.sh
2025-02-18 08:23:35 (3216): Guest Log: -rwxr-xr-x. 1 atlas atlas      8441 Feb 17 17:36 init_data.xml
2025-02-18 08:23:35 (3216): Guest Log: -rwxr-xr-x. 1 atlas atlas    503497 Feb 17 17:36 input.tar.gz
2025-02-18 08:23:35 (3216): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 17 17:36 start_atlas.sh
2025-02-18 08:23:35 (3216): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 17 17:36 EVNT.43078917._001256.pool.root.1 -> /data/./ATLAS.root_0
2025-02-18 08:23:35 (3216): Guest Log: -rw-r--r--. 1 atlas atlas      2548 Feb 17 17:36 pandaJob.out
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas       461 Feb 17 17:36 setup.sh.local
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas    986333 Feb 17 17:37 agis_schedconf.cvmfs.json
2025-02-18 08:23:35 (3216): Guest Log: drwx------. 4 atlas atlas      4096 Feb 17 17:37 pilot3
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas 335906308 Feb 18 07:22 HITS.43078919._045260.pool.root.1
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas        95 Feb 18 07:22 pilot_heartbeat.json
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas      1025 Feb 18 07:22 memory_monitor_summary.json
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas   1593946 Feb 18 07:23 agis_ddmendpoints.agis.ALL.json
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas    732880 Feb 18 07:23 log.43078919._045260.job.log.tgz.1
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas      7724 Feb 18 07:23 heartbeat.json
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas      4347 Feb 18 07:23 pilotlog.txt
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas   6944457 Feb 18 07:23 log.43078919._045260.job.log.1
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas       357 Feb 18 07:23 output.list
2025-02-18 08:23:35 (3216): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 18 07:23 runtime_log
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas   7700480 Feb 18 07:23 result.tar.gz
2025-02-18 08:23:35 (3216): Guest Log: -rw-r--r--. 1 atlas atlas     11326 Feb 18 07:23 runtime_log.err
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas       665 Feb 18 07:23 jeIODmRGO36n9Rq4apOajLDm4fhM0noT9bVoFjIUDmdHUKDmcSOz9n.diag
2025-02-18 08:23:35 (3216): Guest Log: Looking for outputfile HITS.43078919._045260.pool.root.1
2025-02-18 08:23:35 (3216): Guest Log: HITS file was successfully produced
2025-02-18 08:23:35 (3216): Guest Log: -rw-------. 1 atlas atlas 335906308 Feb 18 07:22 /home/atlas/RunAtlas/HITS.43078919._045260.pool.root.1
2025-02-18 08:23:36 (3216): Guest Log: Successfully finished the ATLAS job!
2025-02-18 08:23:36 (3216): Guest Log: Copying the results back to the shared directory!
2025-02-18 08:23:37 (3216): Guest Log:  *** Contents of shared directory: ***
2025-02-18 08:23:37 (3216): Guest Log: total 671396
2025-02-18 08:23:37 (3216): Guest Log: -rwxrwxrwx. 1 root root 343363229 Feb 17 17:35 ATLAS.root_0
2025-02-18 08:23:37 (3216): Guest Log: -rwxrwxrwx. 1 root root 335906308 Feb 18 07:23 HITS.pool.root.1
2025-02-18 08:23:37 (3216): Guest Log: -rwxrwxrwx. 1 root root      8441 Feb 17 17:35 init_data.xml
2025-02-18 08:23:37 (3216): Guest Log: -rwxrwxrwx. 1 root root    503497 Feb 15 08:54 input.tar.gz
2025-02-18 08:23:37 (3216): Guest Log: -rwxrwxrwx. 1 root root   7700480 Feb 18 07:23 result.tar.gz
2025-02-18 08:23:37 (3216): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 15 08:54 start_atlas.sh
2025-02-18 08:23:37 (3216): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-18 08:23:37 (3216): VM Completion File Detected.
2025-02-18 08:23:37 (3216): Powering off VM.
2025-02-18 08:23:38 (3216): Successfully stopped VM.
2025-02-18 08:23:38 (3216): Deregistering VM. (boinc_eb9b159673be4d96, slot#0)
2025-02-18 08:23:38 (3216): Removing network bandwidth throttle group from VM.
2025-02-18 08:23:38 (3216): Removing VM from VirtualBox.
08:23:44 (3216): called boinc_finish(0)

</stderr_txt>
]]>

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