Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-15 07:44:45 (23856): Detected: vboxwrapper 26206
2025-02-15 07:44:45 (23856): Detected: BOINC client v8.0.2
2025-02-15 07:44:46 (23856): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2025-02-15 07:44:46 (23856): Successfully copied 'init_data.xml' to the shared directory.
2025-02-15 07:45:32 (23856): Error: Timeout
2025-02-15 07:45:32 (23856): ERROR: VM failed to start
2025-02-15 07:45:37 (23856): 
   BOINC will be notified that it needs to clean up the environment.
         This is a temporary problem and so this job will be rescheduled for another time.

2025-02-17 16:32:45 (11192): Detected: vboxwrapper 26206
2025-02-17 16:32:45 (11192): Detected: BOINC client v8.0.2
2025-02-17 16:32:46 (11192): Detected: VirtualBox VboxManage Interface (Version: 7.0.12)
2025-02-17 16:32:47 (11192): Create VM. (boinc_e5114fd0f9b9639a, slot#343)
2025-02-17 16:32:47 (11192): Setting Memory Size for VM. (4800MB)
2025-02-17 16:32:47 (11192): Setting CPU Count for VM. (8)
2025-02-17 16:32:48 (11192): Setting Chipset Options for VM.
2025-02-17 16:32:48 (11192): Setting Graphics Controller Options for VM.
2025-02-17 16:32:48 (11192): Setting Boot Options for VM.
2025-02-17 16:32:48 (11192): Setting Network Configuration for NAT.
2025-02-17 16:32:49 (11192): Enabling VM Network Access.
2025-02-17 16:32:49 (11192): Disabling USB Support for VM.
2025-02-17 16:32:49 (11192): Disabling COM Port Support for VM.
2025-02-17 16:32:50 (11192): Disabling LPT Port Support for VM.
2025-02-17 16:32:50 (11192): Disabling Audio Support for VM.
2025-02-17 16:32:50 (11192): Disabling Clipboard Support for VM.
2025-02-17 16:32:51 (11192): Disabling Drag and Drop Support for VM.
2025-02-17 16:32:51 (11192): Adding storage controller(s) to VM.
2025-02-17 16:32:51 (11192): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-17 16:32:52 (11192): Adding VirtualBox Guest Additions to VM.
2025-02-17 16:32:52 (11192): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-17 16:32:53 (11192): forwarding host port 57336 to guest port 80
2025-02-17 16:32:53 (11192): Enabling remote desktop for VM.
2025-02-17 16:32:53 (11192): Required extension pack not installed, remote desktop not enabled.
2025-02-17 16:32:53 (11192): Enabling shared directory for VM.
2025-02-17 16:32:54 (11192): Starting VM using VBoxManage interface. (boinc_e5114fd0f9b9639a, slot#343)
2025-02-17 16:32:59 (11192): Successfully started VM. (PID = '25848')
2025-02-17 16:32:59 (11192): Reporting VM Process ID to BOINC.
2025-02-17 16:32:59 (11192): Guest Log: BIOS: VirtualBox 7.0.12
2025-02-17 16:32:59 (11192): Guest Log: CPUID EDX: 0x178bfbff
2025-02-17 16:32:59 (11192): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-17 16:32:59 (11192): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-17 16:32:59 (11192): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-17 16:32:59 (11192): Detected: Web Application Enabled (http://localhost:57336)
2025-02-17 16:32:59 (11192): Preference change detected
2025-02-17 16:32:59 (11192): Setting CPU throttle for VM. (90%)
2025-02-17 16:32:59 (11192): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-17 16:33:01 (11192): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-17 16:33:01 (11192): Guest Log: BIOS: Booting from Hard Disk...
2025-02-17 16:33:03 (11192): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-17 16:33:03 (11192): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-17 16:33:03 (11192): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-17 16:33:12 (11192): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-17 16:33:12 (11192): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-17 16:33:21 (11192): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-17 16:33:21 (11192): Guest Log: 00:00:00.000138 main     Log opened 2025-02-17T16:33:18.400667000Z
2025-02-17 16:33:21 (11192): Guest Log: 00:00:00.000231 main     OS Product: Linux
2025-02-17 16:33:21 (11192): Guest Log: 00:00:00.000295 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-17 16:33:21 (11192): Guest Log: 00:00:00.000321 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-17 16:33:21 (11192): Guest Log: 00:00:00.000349 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-17 16:33:21 (11192): Guest Log: 00:00:00.000349 main     Process ID: 1366
2025-02-17 16:33:21 (11192): Guest Log: 00:00:00.000350 main     Package type: LINUX_64BITS_GENERIC
2025-02-17 16:33:21 (11192): Guest Log: 00:00:00.001522 main     5.2.32 r132073 started. Verbose level = 0
2025-02-17 16:33:21 (11192): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-17 16:33:21 (11192): Guest Log: [INFO] Mounting shared directory
2025-02-17 16:33:21 (11192): Guest Log: [INFO] Checking for init_data.xml
2025-02-17 16:33:25 (11192): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-17 16:33:25 (11192): Guest Log: [INFO] Detected branch: prod
2025-02-17 16:33:25 (11192): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-17 16:33:25 (11192): Guest Log: Copying input files
2025-02-17 16:33:29 (11192): Guest Log: Copied input files into RunAtlas.
2025-02-17 16:33:29 (11192): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-17 16:33:29 (11192): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-17 16:33:29 (11192): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-17 16:33:29 (11192): Guest Log: Further information can be found at the LHC@home message board.
2025-02-17 16:33:31 (11192): Guest Log: 00:00:10.030377 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 212 086 372 000ns (GuestNow=1 739 835 210 500 114 000 ns GuestLast=1 739 809 998 413 742 000 ns fSetTimeLastLoop=true )
2025-02-17 16:33:38 (11192): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-17 16:33:38 (11192): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-17 16:33:38 (11192): Guest Log: 2.6.3.0 1649 0 30156 142767 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-17 16:33:40 (11192): Guest Log: copied the webapp to /var/www
2025-02-17 16:33:40 (11192): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-17 16:33:40 (11192): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-17 16:33:40 (11192): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-17 16:33:40 (11192): Guest Log:  *** Starting ATLAS job. (PandaID=6512639344 taskID=43092792) ***
2025-02-17 18:29:24 (11192): Status Report: Elapsed Time: '6000.631428'
2025-02-17 18:29:24 (11192): Status Report: CPU Time: '21905.828125'
2025-02-17 20:21:13 (11192): Status Report: Elapsed Time: '12012.924671'
2025-02-17 20:21:13 (11192): Status Report: CPU Time: '46846.281250'
2025-02-17 22:19:12 (11192): Status Report: Elapsed Time: '18013.458508'
2025-02-17 22:19:12 (11192): Status Report: CPU Time: '74501.171875'
2025-02-17 23:11:33 (11192): Guest Log:  *** Job finished ***
2025-02-17 23:11:33 (11192): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:24,417 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:25,439 | INFO     | [job] queue monitor thread has finished
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:25,446 | INFO     | [data] queue_monitor thread has finished
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:25,973 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140440139429696)>', '<ExcThread(monitor, started 140439256561408)>']
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:26,456 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:26,457 | INFO     | [monitor] control thread has ended
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,007 | INFO     | all workflow threads have been joined
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,007 | INFO     | end of generic workflow (traces error code: 0)
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,008 | INFO     | traces error code: 0
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,008 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,131 [wrapper] ==== pilot stdout END ====
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,147 [wrapper] ==== wrapper stdout RESUME ====
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,163 [wrapper] pilotpid: 6026
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,188 [wrapper] Pilot exit status: 0
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,280 [wrapper] pandaids: 6512639344
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,356 [wrapper] cleanup supervisor_pilot 25936 6027
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,364 [wrapper] Test setup, not cleaning
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,407 [wrapper] apfmon messages muted
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,421 [wrapper] ==== wrapper stdout END ====
2025-02-17 23:11:33 (11192): Guest Log: 2025-02-18 06:11:31,427 [wrapper] ==== wrapper stderr END ====
2025-02-17 23:11:33 (11192): Guest Log:  *** Error codes and diagnostics ***
2025-02-17 23:11:33 (11192): Guest Log:     "exeErrorCode": 0,
2025-02-17 23:11:33 (11192): Guest Log:     "exeErrorDiag": "",
2025-02-17 23:11:33 (11192): Guest Log:     "pilotErrorCode": 0,
2025-02-17 23:11:33 (11192): Guest Log:     "pilotErrorDiag": "",
2025-02-17 23:11:33 (11192): Guest Log:  *** Listing of results directory ***
2025-02-17 23:11:33 (11192): Guest Log: total 350408
2025-02-17 23:11:33 (11192): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 13 21:25 queuedata.json
2025-02-17 23:11:33 (11192): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 13 21:25 pilot3.tar.gz
2025-02-17 23:11:33 (11192): Guest Log: -rwx------. 1 atlas atlas     34924 Feb 13 21:26 runpilot2-wrapper.sh
2025-02-17 23:11:33 (11192): Guest Log: -rwxr-xr-x. 1 atlas atlas      9039 Feb 17 23:33 init_data.xml
2025-02-17 23:11:33 (11192): Guest Log: -rwxr-xr-x. 1 atlas atlas    503501 Feb 17 23:33 input.tar.gz
2025-02-17 23:11:33 (11192): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 17 23:33 start_atlas.sh
2025-02-17 23:11:33 (11192): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 17 23:33 EVNT.43092790._000046.pool.root.1 -> /data/./ATLAS.root_0
2025-02-17 23:11:33 (11192): Guest Log: -rw-r--r--. 1 atlas atlas      2553 Feb 17 23:33 pandaJob.out
2025-02-17 23:11:33 (11192): Guest Log: -rw-------. 1 atlas atlas       424 Feb 17 23:33 setup.sh.local
2025-02-17 23:11:33 (11192): Guest Log: -rw-------. 1 atlas atlas    986333 Feb 17 23:34 agis_schedconf.cvmfs.json
2025-02-17 23:11:33 (11192): Guest Log: drwx------. 4 atlas atlas      4096 Feb 17 23:34 pilot3
2025-02-17 23:11:33 (11192): Guest Log: -rw-------. 1 atlas atlas 350889986 Feb 18 06:10 HITS.43092792._002332.pool.root.1
2025-02-17 23:11:33 (11192): Guest Log: -rw-------. 1 atlas atlas        96 Feb 18 06:10 pilot_heartbeat.json
2025-02-17 23:11:33 (11192): Guest Log: -rw-------. 1 atlas atlas      1032 Feb 18 06:10 memory_monitor_summary.json
2025-02-17 23:11:34 (11192): Guest Log: -rw-------. 1 atlas atlas   1593946 Feb 18 06:10 agis_ddmendpoints.agis.ALL.json
2025-02-17 23:11:34 (11192): Guest Log: -rw-------. 1 atlas atlas    442397 Feb 18 06:10 log.43092792._002332.job.log.tgz.1
2025-02-17 23:11:34 (11192): Guest Log: -rw-------. 1 atlas atlas      7741 Feb 18 06:11 heartbeat.json
2025-02-17 23:11:34 (11192): Guest Log: -rw-------. 1 atlas atlas      4398 Feb 18 06:11 pilotlog.txt
2025-02-17 23:11:34 (11192): Guest Log: -rw-------. 1 atlas atlas   1644903 Feb 18 06:11 log.43092792._002332.job.log.1
2025-02-17 23:11:34 (11192): Guest Log: -rw-------. 1 atlas atlas       357 Feb 18 06:11 output.list
2025-02-17 23:11:34 (11192): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 18 06:11 runtime_log
2025-02-17 23:11:34 (11192): Guest Log: -rw-------. 1 atlas atlas   2109440 Feb 18 06:11 result.tar.gz
2025-02-17 23:11:34 (11192): Guest Log: -rw-r--r--. 1 atlas atlas     10972 Feb 18 06:11 runtime_log.err
2025-02-17 23:11:34 (11192): Guest Log: -rw-------. 1 atlas atlas       671 Feb 18 06:11 6EOODmntv26n9Rq4apOajLDm4fhM0noT9bVoFjIUDm6jSKDmCbwWXm.diag
2025-02-17 23:11:34 (11192): Guest Log: Looking for outputfile HITS.43092792._002332.pool.root.1
2025-02-17 23:11:34 (11192): Guest Log: HITS file was successfully produced
2025-02-17 23:11:34 (11192): Guest Log: -rw-------. 1 atlas atlas 350889986 Feb 18 06:10 /home/atlas/RunAtlas/HITS.43092792._002332.pool.root.1
2025-02-17 23:11:35 (11192): Guest Log: Successfully finished the ATLAS job!
2025-02-17 23:11:35 (11192): Guest Log: Copying the results back to the shared directory!
2025-02-17 23:11:35 (11192): Guest Log:  *** Contents of shared directory: ***
2025-02-17 23:11:35 (11192): Guest Log: total 682772
2025-02-17 23:11:35 (11192): Guest Log: -rwxrwxrwx. 1 root root 345616499 Feb 15 14:44 ATLAS.root_0
2025-02-17 23:11:35 (11192): Guest Log: -rwxrwxrwx. 1 root root 350889986 Feb 18 06:11 HITS.pool.root.1
2025-02-17 23:11:35 (11192): Guest Log: -rwxrwxrwx. 1 root root      9039 Feb 15 14:44 init_data.xml
2025-02-17 23:11:35 (11192): Guest Log: -rwxrwxrwx. 1 root root    503501 Feb 14 00:36 input.tar.gz
2025-02-17 23:11:35 (11192): Guest Log: -rwxrwxrwx. 1 root root   2109440 Feb 18 06:11 result.tar.gz
2025-02-17 23:11:35 (11192): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 14 00:36 start_atlas.sh
2025-02-17 23:11:35 (11192): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-17 23:11:35 (11192): VM Completion File Detected.
2025-02-17 23:11:35 (11192): Powering off VM.
2025-02-17 23:11:36 (11192): Successfully stopped VM.
2025-02-17 23:11:36 (11192): Deregistering VM. (boinc_e5114fd0f9b9639a, slot#343)
2025-02-17 23:11:36 (11192): Removing network bandwidth throttle group from VM.
2025-02-17 23:11:37 (11192): Removing VM from VirtualBox.
23:11:42 (11192): called boinc_finish(0)

</stderr_txt>
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