Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-11 12:00:19 (6616): Detected: vboxwrapper 26206
2025-02-11 12:00:19 (6616): Detected: BOINC client v8.0.2
2025-02-11 12:00:19 (6616): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-11 12:00:19 (6616): Successfully copied 'init_data.xml' to the shared directory.
2025-02-11 12:00:20 (6616): Create VM. (boinc_23aaf56c5986cc97, slot#4)
2025-02-11 12:00:20 (6616): Setting Memory Size for VM. (4800MB)
2025-02-11 12:00:21 (6616): Setting CPU Count for VM. (8)
2025-02-11 12:00:21 (6616): Setting Chipset Options for VM.
2025-02-11 12:00:21 (6616): Setting Graphics Controller Options for VM.
2025-02-11 12:00:22 (6616): Setting Boot Options for VM.
2025-02-11 12:00:22 (6616): Setting Network Configuration for NAT.
2025-02-11 12:00:22 (6616): Enabling VM Network Access.
2025-02-11 12:00:22 (6616): Disabling USB Support for VM.
2025-02-11 12:00:23 (6616): Disabling COM Port Support for VM.
2025-02-11 12:00:23 (6616): Disabling LPT Port Support for VM.
2025-02-11 12:00:23 (6616): Disabling Audio Support for VM.
2025-02-11 12:00:24 (6616): Disabling Clipboard Support for VM.
2025-02-11 12:00:24 (6616): Disabling Drag and Drop Support for VM.
2025-02-11 12:00:24 (6616): Adding storage controller(s) to VM.
2025-02-11 12:00:24 (6616): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-11 12:00:27 (6616): Adding VirtualBox Guest Additions to VM.
2025-02-11 12:00:28 (6616): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-11 12:00:28 (6616): forwarding host port 60566 to guest port 80
2025-02-11 12:00:28 (6616): Enabling remote desktop for VM.
2025-02-11 12:00:29 (6616): Required extension pack not installed, remote desktop not enabled.
2025-02-11 12:00:29 (6616): Enabling shared directory for VM.
2025-02-11 12:00:29 (6616): Starting VM using VBoxManage interface. (boinc_23aaf56c5986cc97, slot#4)
2025-02-11 12:00:35 (6616): Successfully started VM. (PID = '18616')
2025-02-11 12:00:35 (6616): Reporting VM Process ID to BOINC.
2025-02-11 12:00:35 (6616): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-11 12:00:35 (6616): Guest Log: CPUID EDX: 0x178bfbff
2025-02-11 12:00:35 (6616): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-11 12:00:35 (6616): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-11 12:00:35 (6616): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-11 12:00:35 (6616): Detected: Web Application Enabled (http://localhost:60566)
2025-02-11 12:00:35 (6616): Preference change detected
2025-02-11 12:00:35 (6616): Setting CPU throttle for VM. (90%)
2025-02-11 12:00:35 (6616): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-11 12:00:37 (6616): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-11 12:00:37 (6616): Guest Log: BIOS: Booting from Hard Disk...
2025-02-11 12:00:39 (6616): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-11 12:00:39 (6616): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-11 12:00:39 (6616): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-11 12:00:45 (6616): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-11 12:00:45 (6616): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-11 12:00:49 (6616): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-11 12:00:49 (6616): Guest Log: 00:00:00.000109 main     Log opened 2025-02-11T12:00:48.186521000Z
2025-02-11 12:00:49 (6616): Guest Log: 00:00:00.000164 main     OS Product: Linux
2025-02-11 12:00:49 (6616): Guest Log: 00:00:00.000182 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-11 12:00:49 (6616): Guest Log: 00:00:00.000195 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-11 12:00:49 (6616): Guest Log: 00:00:00.000209 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-11 12:00:49 (6616): Guest Log: 00:00:00.000209 main     Process ID: 1363
2025-02-11 12:00:49 (6616): Guest Log: 00:00:00.000209 main     Package type: LINUX_64BITS_GENERIC
2025-02-11 12:00:49 (6616): Guest Log: 00:00:00.000673 main     5.2.32 r132073 started. Verbose level = 0
2025-02-11 12:00:49 (6616): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-11 12:00:49 (6616): Guest Log: [INFO] Mounting shared directory
2025-02-11 12:00:49 (6616): Guest Log: [INFO] Checking for init_data.xml
2025-02-11 12:00:52 (6616): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-11 12:00:52 (6616): Guest Log: [INFO] Detected branch: prod
2025-02-11 12:00:52 (6616): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-11 12:00:52 (6616): Guest Log: Copying input files
2025-02-11 12:00:54 (6616): Guest Log: Copied input files into RunAtlas.
2025-02-11 12:00:54 (6616): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-11 12:00:54 (6616): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-11 12:00:54 (6616): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-11 12:00:54 (6616): Guest Log: Further information can be found at the LHC@home message board.
2025-02-11 12:00:59 (6616): Guest Log: 00:00:10.002173 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 810 562 896 000ns (GuestNow=1 739 304 058 750 707 000 ns GuestLast=1 739 275 248 187 811 000 ns fSetTimeLastLoop=true )
2025-02-11 12:01:04 (6616): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-11 12:01:04 (6616): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-11 12:01:04 (6616): Guest Log: 2.6.3.0 1642 0 30148 142535 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-11 12:01:04 (6616): Guest Log: copied the webapp to /var/www
2025-02-11 12:01:04 (6616): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-11 12:01:04 (6616): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-11 12:01:04 (6616): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-11 12:01:04 (6616): Guest Log:  *** Starting ATLAS job. (PandaID=6510415687 taskID=43078943) ***
2025-02-11 13:40:43 (6616): Status Report: Elapsed Time: '6000.000000'
2025-02-11 13:40:43 (6616): Status Report: CPU Time: '33447.515625'
2025-02-11 14:00:32 (6616): VM state change detected. (old = 'running', new = 'paused')
2025-02-11 15:09:44 (6616): VM state change detected. (old = 'paused', new = 'running')
2025-02-11 15:09:45 (6616): Guest Log: 01:59:44.294812 timesync vgsvcTimeSyncWorker: Radical host time change: 4 161 531 000 000ns (HostNow=1 739 315 384 553 000 000 ns HostLast=1 739 311 223 022 000 000 ns)
2025-02-11 15:09:55 (6616): Guest Log: 01:59:54.295875 timesync vgsvcTimeSyncWorker: Radical guest time change: 4 161 538 200 000ns (GuestNow=1 739 315 394 567 692 000 ns GuestLast=1 739 311 233 029 492 000 ns fSetTimeLastLoop=true )
2025-02-11 16:12:26 (6616): VM state change detected. (old = 'running', new = 'paused')
2025-02-12 01:01:01 (6616): VM state change detected. (old = 'paused', new = 'running')
2025-02-12 01:01:02 (6616): Guest Log: 03:02:25.849406 timesync vgsvcTimeSyncWorker: Radical host time change: 31 725 354 000 000ns (HostNow=1 739 350 861 447 000 000 ns HostLast=1 739 319 136 093 000 000 ns)
2025-02-12 01:01:12 (6616): Guest Log: 03:02:35.854690 timesync vgsvcTimeSyncWorker: Radical guest time change: 31 725 340 767 000ns (GuestNow=1 739 350 871 457 003 000 ns GuestLast=1 739 319 146 116 236 000 ns fSetTimeLastLoop=true )
2025-02-12 01:18:37 (6616): Status Report: Elapsed Time: '12000.000000'
2025-02-12 01:18:37 (6616): Status Report: CPU Time: '75955.296875'
2025-02-12 01:51:04 (6616): Guest Log:  *** Job finished ***
2025-02-12 01:51:04 (6616): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:50:53,298 | INFO     | [job] validate thread has finished
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:50:53,892 | INFO     | [data] copytool_out thread has finished
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:50:56,331 | INFO     | [data] queue_monitor thread has finished
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:50:58,203 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139837327636288)>', '<ExcThread(monitor, started 139836736395008)>']
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:50:58,960 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:50:58,961 | INFO     | [monitor] control thread has ended
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,208 | INFO     | all workflow threads have been joined
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,209 | INFO     | end of generic workflow (traces error code: 0)
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,209 | INFO     | traces error code: 0
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,209 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,268 [wrapper] ==== pilot stdout END ====
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,271 [wrapper] ==== wrapper stdout RESUME ====
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,274 [wrapper] pilotpid: 6021
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,276 [wrapper] Pilot exit status: 0
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,331 [wrapper] pandaids: 6510415687
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,350 [wrapper] cleanup supervisor_pilot 18064 6022
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,352 [wrapper] Test setup, not cleaning
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,357 [wrapper] apfmon messages muted
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,360 [wrapper] ==== wrapper stdout END ====
2025-02-12 01:51:04 (6616): Guest Log: 2025-02-12 09:51:03,362 [wrapper] ==== wrapper stderr END ====
2025-02-12 01:51:04 (6616): Guest Log:  *** Error codes and diagnostics ***
2025-02-12 01:51:04 (6616): Guest Log:     "exeErrorCode": 0,
2025-02-12 01:51:04 (6616): Guest Log:     "exeErrorDiag": "",
2025-02-12 01:51:04 (6616): Guest Log:     "pilotErrorCode": 0,
2025-02-12 01:51:04 (6616): Guest Log:     "pilotErrorDiag": "",
2025-02-12 01:51:04 (6616): Guest Log:  *** Listing of results directory ***
2025-02-12 01:51:04 (6616): Guest Log: total 351000
2025-02-12 01:51:04 (6616): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb 11 17:23 pilot3.tar.gz
2025-02-12 01:51:04 (6616): Guest Log: -rw-r--r--. 1 atlas atlas      5118 Feb 11 17:56 queuedata.json
2025-02-12 01:51:04 (6616): Guest Log: -rwx------. 1 atlas atlas     34924 Feb 11 17:57 runpilot2-wrapper.sh
2025-02-12 01:51:04 (6616): Guest Log: -rwxr-xr-x. 1 atlas atlas     11868 Feb 11 20:00 init_data.xml
2025-02-12 01:51:04 (6616): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 11 20:00 start_atlas.sh
2025-02-12 01:51:04 (6616): Guest Log: -rwxr-xr-x. 1 atlas atlas    503490 Feb 11 20:00 input.tar.gz
2025-02-12 01:51:04 (6616): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 11 20:00 EVNT.43078940._000035.pool.root.1 -> /data/./ATLAS.root_0
2025-02-12 01:51:04 (6616): Guest Log: -rw-r--r--. 1 atlas atlas      2518 Feb 11 20:01 pandaJob.out
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas       424 Feb 11 20:01 setup.sh.local
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas    986834 Feb 11 20:01 agis_schedconf.cvmfs.json
2025-02-12 01:51:04 (6616): Guest Log: drwx------. 4 atlas atlas      4096 Feb 11 20:01 pilot3
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas 352522850 Feb 12 09:50 HITS.43078943._001346.pool.root.1
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas      1025 Feb 12 09:50 memory_monitor_summary.json
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas        98 Feb 12 09:50 pilot_heartbeat.json
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas   1591814 Feb 12 09:50 agis_ddmendpoints.agis.ALL.json
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas    374354 Feb 12 09:50 log.43078943._001346.job.log.tgz.1
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas      7698 Feb 12 09:50 heartbeat.json
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas      4584 Feb 12 09:51 pilotlog.txt
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas   1205368 Feb 12 09:51 log.43078943._001346.job.log.1
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas       357 Feb 12 09:51 output.list
2025-02-12 01:51:04 (6616): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 12 09:51 runtime_log
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas   1597440 Feb 12 09:51 result.tar.gz
2025-02-12 01:51:04 (6616): Guest Log: -rw-r--r--. 1 atlas atlas     10948 Feb 12 09:51 runtime_log.err
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas       661 Feb 12 09:51 2FLODmMh916nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmShWKDmMxvcEn.diag
2025-02-12 01:51:04 (6616): Guest Log: Looking for outputfile HITS.43078943._001346.pool.root.1
2025-02-12 01:51:04 (6616): Guest Log: HITS file was successfully produced
2025-02-12 01:51:04 (6616): Guest Log: -rw-------. 1 atlas atlas 352522850 Feb 12 09:50 /home/atlas/RunAtlas/HITS.43078943._001346.pool.root.1
2025-02-12 01:51:05 (6616): Guest Log: Successfully finished the ATLAS job!
2025-02-12 01:51:05 (6616): Guest Log: Copying the results back to the shared directory!
2025-02-12 01:51:05 (6616): Guest Log:  *** Contents of shared directory: ***
2025-02-12 01:51:05 (6616): Guest Log: total 685320
2025-02-12 01:51:05 (6616): Guest Log: -rwxrwxrwx. 1 root root 347103480 Feb 11 20:00 ATLAS.root_0
2025-02-12 01:51:05 (6616): Guest Log: -rwxrwxrwx. 1 root root 352522850 Feb 12  2025 HITS.pool.root.1
2025-02-12 01:51:05 (6616): Guest Log: -rwxrwxrwx. 1 root root     11868 Feb 11 20:00 init_data.xml
2025-02-12 01:51:05 (6616): Guest Log: -rwxrwxrwx. 1 root root    503490 Feb 11 19:25 input.tar.gz
2025-02-12 01:51:05 (6616): Guest Log: -rwxrwxrwx. 1 root root   1597440 Feb 12  2025 result.tar.gz
2025-02-12 01:51:05 (6616): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb 11 19:25 start_atlas.sh
2025-02-12 01:51:05 (6616): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-12 01:51:05 (6616): VM Completion File Detected.
2025-02-12 01:51:05 (6616): Powering off VM.
2025-02-12 01:51:06 (6616): Successfully stopped VM.
2025-02-12 01:51:06 (6616): Deregistering VM. (boinc_23aaf56c5986cc97, slot#4)
2025-02-12 01:51:06 (6616): Removing network bandwidth throttle group from VM.
2025-02-12 01:51:06 (6616): Removing VM from VirtualBox.
01:51:11 (6616): called boinc_finish(0)

</stderr_txt>
]]>

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