Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-10 06:32:54 (121776): Detected: vboxwrapper 26206
2025-02-10 06:32:54 (121776): Detected: BOINC client v8.0.2
2025-02-10 06:32:54 (121776): Detected: VirtualBox VboxManage Interface (Version: 7.1.6)
2025-02-10 06:32:55 (121776): Successfully copied 'init_data.xml' to the shared directory.
2025-02-10 06:32:55 (121776): Create VM. (boinc_b6a49595d09dde12, slot#2)
2025-02-10 06:32:56 (121776): Setting Memory Size for VM. (4800MB)
2025-02-10 06:32:56 (121776): Setting CPU Count for VM. (8)
2025-02-10 06:32:56 (121776): Setting Chipset Options for VM.
2025-02-10 06:32:57 (121776): Setting Graphics Controller Options for VM.
2025-02-10 06:32:57 (121776): Setting Boot Options for VM.
2025-02-10 06:32:57 (121776): Setting Network Configuration for NAT.
2025-02-10 06:32:57 (121776): Enabling VM Network Access.
2025-02-10 06:32:58 (121776): Disabling USB Support for VM.
2025-02-10 06:32:58 (121776): Disabling COM Port Support for VM.
2025-02-10 06:32:58 (121776): Disabling LPT Port Support for VM.
2025-02-10 06:32:58 (121776): Disabling Audio Support for VM.
2025-02-10 06:32:59 (121776): Disabling Clipboard Support for VM.
2025-02-10 06:32:59 (121776): Disabling Drag and Drop Support for VM.
2025-02-10 06:32:59 (121776): Adding storage controller(s) to VM.
2025-02-10 06:32:59 (121776): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-10 06:33:02 (121776): Adding VirtualBox Guest Additions to VM.
2025-02-10 06:33:03 (121776): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-10 06:33:03 (121776): forwarding host port 62386 to guest port 80
2025-02-10 06:33:03 (121776): Enabling remote desktop for VM.
2025-02-10 06:33:03 (121776): Required extension pack not installed, remote desktop not enabled.
2025-02-10 06:33:03 (121776): Enabling shared directory for VM.
2025-02-10 06:33:04 (121776): Starting VM using VBoxManage interface. (boinc_b6a49595d09dde12, slot#2)
2025-02-10 06:33:09 (121776): Successfully started VM. (PID = '122036')
2025-02-10 06:33:09 (121776): Reporting VM Process ID to BOINC.
2025-02-10 06:33:09 (121776): Guest Log: BIOS: VirtualBox 7.1.6
2025-02-10 06:33:09 (121776): Guest Log: CPUID EDX: 0x178bfbff
2025-02-10 06:33:09 (121776): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-10 06:33:09 (121776): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-10 06:33:09 (121776): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-10 06:33:09 (121776): Detected: Web Application Enabled (http://localhost:62386)
2025-02-10 06:33:09 (121776): Preference change detected
2025-02-10 06:33:09 (121776): Setting CPU throttle for VM. (100%)
2025-02-10 06:33:09 (121776): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-10 06:33:11 (121776): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-10 06:33:11 (121776): Guest Log: BIOS: Booting from Hard Disk...
2025-02-10 06:33:13 (121776): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-10 06:33:13 (121776): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-10 06:33:13 (121776): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-10 06:33:18 (121776): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-10 06:33:18 (121776): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-10 06:33:22 (121776): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-10 06:33:22 (121776): Guest Log: 00:00:00.000113 main     Log opened 2025-02-10T06:33:20.619564000Z
2025-02-10 06:33:22 (121776): Guest Log: 00:00:00.000199 main     OS Product: Linux
2025-02-10 06:33:22 (121776): Guest Log: 00:00:00.000228 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-10 06:33:22 (121776): Guest Log: 00:00:00.000253 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-10 06:33:22 (121776): Guest Log: 00:00:00.000276 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-10 06:33:22 (121776): Guest Log: 00:00:00.000277 main     Process ID: 1368
2025-02-10 06:33:22 (121776): Guest Log: 00:00:00.000277 main     Package type: LINUX_64BITS_GENERIC
2025-02-10 06:33:22 (121776): Guest Log: 00:00:00.000867 main     5.2.32 r132073 started. Verbose level = 0
2025-02-10 06:33:22 (121776): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-10 06:33:22 (121776): Guest Log: [INFO] Mounting shared directory
2025-02-10 06:33:22 (121776): Guest Log: [INFO] Checking for init_data.xml
2025-02-10 06:33:32 (121776): Guest Log: 00:00:10.025285 timesync vgsvcTimeSyncWorker: Radical guest time change: -7 188 447 661 000ns (GuestNow=1 739 162 012 173 514 000 ns GuestLast=1 739 169 200 621 175 000 ns fSetTimeLastLoop=true )
2025-02-10 06:33:56 (121776): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-10 06:33:56 (121776): Guest Log: [INFO] Detected branch: prod
2025-02-10 06:33:58 (121776): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-10 06:33:58 (121776): Guest Log: Copying input files
2025-02-10 06:34:00 (121776): Guest Log: Copied input files into RunAtlas.
2025-02-10 06:34:00 (121776): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-10 06:34:00 (121776): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-10 06:34:00 (121776): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-10 06:34:00 (121776): Guest Log: Further information can be found at the LHC@home message board.
2025-02-10 06:34:23 (121776): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-10 06:34:26 (121776): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-10 06:34:26 (121776): Guest Log: 2.6.3.0 1656 0 32012 142472 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-10 06:34:27 (121776): Guest Log: copied the webapp to /var/www
2025-02-10 06:34:27 (121776): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-10 06:34:27 (121776): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-10 06:34:31 (121776): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-10 06:34:31 (121776): Guest Log:  *** Starting ATLAS job. (PandaID=6509526303 taskID=43197887) ***
2025-02-10 08:18:45 (121776): Status Report: Elapsed Time: '6000.059769'
2025-02-10 08:18:45 (121776): Status Report: CPU Time: '35981.593750'
2025-02-10 09:58:46 (121776): Guest Log:  *** Job finished ***
2025-02-10 09:58:46 (121776): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:18,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:19,077 | INFO     | [payload] control thread has finished
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:24,098 | INFO     | [data] queue_monitor thread has finished
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:26,783 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140470508799808)>', '<ExcThread(monitor, started 140469841417984)>']
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:27,431 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:27,431 | INFO     | [monitor] control thread has ended
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:31,794 | INFO     | all workflow threads have been joined
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:31,794 | INFO     | end of generic workflow (traces error code: 0)
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:31,794 | INFO     | traces error code: 0
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:31,795 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:31,890 [wrapper] ==== pilot stdout END ====
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:31,893 [wrapper] ==== wrapper stdout RESUME ====
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:31,896 [wrapper] pilotpid: 6084
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:31,900 [wrapper] Pilot exit status: 0
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:39,777 [wrapper] pandaids: 6509526303
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:39,799 [wrapper] cleanup supervisor_pilot 11336 6085
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:39,802 [wrapper] Test setup, not cleaning
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:39,809 [wrapper] apfmon messages muted
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:39,812 [wrapper] ==== wrapper stdout END ====
2025-02-10 09:58:46 (121776): Guest Log: 2025-02-10 07:58:39,814 [wrapper] ==== wrapper stderr END ====
2025-02-10 09:58:46 (121776): Guest Log:  *** Error codes and diagnostics ***
2025-02-10 09:58:46 (121776): Guest Log:     "exeErrorCode": 0,
2025-02-10 09:58:46 (121776): Guest Log:     "exeErrorDiag": "",
2025-02-10 09:58:46 (121776): Guest Log:     "pilotErrorCode": 0,
2025-02-10 09:58:46 (121776): Guest Log:     "pilotErrorDiag": "",
2025-02-10 09:58:46 (121776): Guest Log:  *** Listing of results directory ***
2025-02-10 09:58:46 (121776): Guest Log: total 308088
2025-02-10 09:58:46 (121776): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb  9 20:12 pilot3.tar.gz
2025-02-10 09:58:46 (121776): Guest Log: -rwx------. 1 atlas atlas     34924 Feb  9 20:19 runpilot2-wrapper.sh
2025-02-10 09:58:46 (121776): Guest Log: -rw-r--r--. 1 atlas atlas      5117 Feb  9 20:19 queuedata.json
2025-02-10 09:58:46 (121776): Guest Log: -rwxr-xr-x. 1 atlas atlas    503494 Feb 10 04:33 input.tar.gz
2025-02-10 09:58:46 (121776): Guest Log: -rwxr-xr-x. 1 atlas atlas      9070 Feb 10 04:33 init_data.xml
2025-02-10 09:58:46 (121776): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 10 04:33 start_atlas.sh
2025-02-10 09:58:46 (121776): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 10 04:33 EVNT.43092741._000201.pool.root.1 -> /data/./ATLAS.root_0
2025-02-10 09:58:46 (121776): Guest Log: -rw-r--r--. 1 atlas atlas      2526 Feb 10 04:34 pandaJob.out
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas       424 Feb 10 04:35 setup.sh.local
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas    983572 Feb 10 04:38 agis_schedconf.cvmfs.json
2025-02-10 09:58:46 (121776): Guest Log: drwx------. 4 atlas atlas      4096 Feb 10 04:39 pilot3
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas 308965301 Feb 10 07:52 HITS.43197887._020885.pool.root.1
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas      1026 Feb 10 07:52 memory_monitor_summary.json
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas   1587792 Feb 10 07:53 agis_ddmendpoints.agis.ALL.json
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas    360365 Feb 10 07:53 log.43197887._020885.job.log.tgz.1
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas        95 Feb 10 07:57 pilot_heartbeat.json
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas      7671 Feb 10 07:58 heartbeat.json
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas      4584 Feb 10 07:58 pilotlog.txt
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas   1030828 Feb 10 07:58 log.43197887._020885.job.log.1
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas       357 Feb 10 07:58 output.list
2025-02-10 09:58:46 (121776): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 10 07:58 runtime_log
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas   1413120 Feb 10 07:58 result.tar.gz
2025-02-10 09:58:46 (121776): Guest Log: -rw-r--r--. 1 atlas atlas     10944 Feb 10 07:58 runtime_log.err
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas       662 Feb 10 07:58 dt4KDmcxS16n9Rq4apOajLDm4fhM0noT9bVoFjIUDmIaNKDm9ACkHm.diag
2025-02-10 09:58:46 (121776): Guest Log: Looking for outputfile HITS.43197887._020885.pool.root.1
2025-02-10 09:58:46 (121776): Guest Log: HITS file was successfully produced
2025-02-10 09:58:46 (121776): Guest Log: -rw-------. 1 atlas atlas 308965301 Feb 10 07:52 /home/atlas/RunAtlas/HITS.43197887._020885.pool.root.1
2025-02-10 09:58:47 (121776): Guest Log: Successfully finished the ATLAS job!
2025-02-10 09:58:47 (121776): Guest Log: Copying the results back to the shared directory!
2025-02-10 09:58:47 (121776): Guest Log:  *** Contents of shared directory: ***
2025-02-10 09:58:47 (121776): Guest Log: total 633056
2025-02-10 09:58:47 (121776): Guest Log: -rwxrwxrwx. 1 root root 337333064 Feb 10 04:32 ATLAS.root_0
2025-02-10 09:58:47 (121776): Guest Log: -rwxrwxrwx. 1 root root 308965301 Feb 10  2025 HITS.pool.root.1
2025-02-10 09:58:47 (121776): Guest Log: -rwxrwxrwx. 1 root root      9070 Feb 10 04:32 init_data.xml
2025-02-10 09:58:47 (121776): Guest Log: -rwxrwxrwx. 1 root root    503494 Feb  9 22:55 input.tar.gz
2025-02-10 09:58:47 (121776): Guest Log: -rwxrwxrwx. 1 root root   1413120 Feb 10  2025 result.tar.gz
2025-02-10 09:58:47 (121776): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb  9 22:55 start_atlas.sh
2025-02-10 09:58:47 (121776): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-10 09:58:47 (121776): VM Completion File Detected.
2025-02-10 09:58:47 (121776): Powering off VM.
2025-02-10 09:58:48 (121776): Successfully stopped VM.
2025-02-10 09:58:48 (121776): Deregistering VM. (boinc_b6a49595d09dde12, slot#2)
2025-02-10 09:58:48 (121776): Removing network bandwidth throttle group from VM.
2025-02-10 09:58:48 (121776): Removing VM from VirtualBox.
09:58:53 (121776): called boinc_finish(0)

</stderr_txt>
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