Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-10 04:35:32 (26180): Detected: vboxwrapper 26206
2025-02-10 04:35:32 (26180): Detected: BOINC client v8.0.2
2025-02-10 04:35:33 (26180): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-10 04:35:33 (26180): Successfully copied 'init_data.xml' to the shared directory.
2025-02-10 04:35:34 (26180): Create VM. (boinc_7f6a60839d835002, slot#2)
2025-02-10 04:35:34 (26180): Setting Memory Size for VM. (4800MB)
2025-02-10 04:35:35 (26180): Setting CPU Count for VM. (8)
2025-02-10 04:35:35 (26180): Setting Chipset Options for VM.
2025-02-10 04:35:35 (26180): Setting Graphics Controller Options for VM.
2025-02-10 04:35:35 (26180): Setting Boot Options for VM.
2025-02-10 04:35:36 (26180): Setting Network Configuration for NAT.
2025-02-10 04:35:36 (26180): Enabling VM Network Access.
2025-02-10 04:35:36 (26180): Disabling USB Support for VM.
2025-02-10 04:35:37 (26180): Disabling COM Port Support for VM.
2025-02-10 04:35:37 (26180): Disabling LPT Port Support for VM.
2025-02-10 04:35:37 (26180): Disabling Audio Support for VM.
2025-02-10 04:35:37 (26180): Disabling Clipboard Support for VM.
2025-02-10 04:35:38 (26180): Disabling Drag and Drop Support for VM.
2025-02-10 04:35:38 (26180): Adding storage controller(s) to VM.
2025-02-10 04:35:38 (26180): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-10 04:35:39 (26180): Adding VirtualBox Guest Additions to VM.
2025-02-10 04:35:39 (26180): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-10 04:35:39 (26180): forwarding host port 56708 to guest port 80
2025-02-10 04:35:40 (26180): Enabling remote desktop for VM.
2025-02-10 04:35:40 (26180): Required extension pack not installed, remote desktop not enabled.
2025-02-10 04:35:40 (26180): Enabling shared directory for VM.
2025-02-10 04:35:40 (26180): Starting VM using VBoxManage interface. (boinc_7f6a60839d835002, slot#2)
2025-02-10 04:35:45 (26180): Successfully started VM. (PID = '24568')
2025-02-10 04:35:45 (26180): Reporting VM Process ID to BOINC.
2025-02-10 04:35:45 (26180): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-10 04:35:45 (26180): Guest Log: CPUID EDX: 0x178bfbff
2025-02-10 04:35:45 (26180): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-10 04:35:45 (26180): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-10 04:35:45 (26180): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-10 04:35:45 (26180): Detected: Web Application Enabled (http://localhost:56708)
2025-02-10 04:35:45 (26180): Preference change detected
2025-02-10 04:35:45 (26180): Setting CPU throttle for VM. (50%)
2025-02-10 04:35:45 (26180): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-10 04:35:47 (26180): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-10 04:35:47 (26180): Guest Log: BIOS: Booting from Hard Disk...
2025-02-10 04:35:49 (26180): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-10 04:35:49 (26180): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-10 04:35:49 (26180): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-10 04:35:59 (26180): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-10 04:35:59 (26180): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-10 04:36:06 (26180): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-10 04:36:06 (26180): Guest Log: 00:00:00.000093 main     Log opened 2025-02-10T04:36:05.468156000Z
2025-02-10 04:36:06 (26180): Guest Log: 00:00:00.000204 main     OS Product: Linux
2025-02-10 04:36:06 (26180): Guest Log: 00:00:00.000240 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-10 04:36:06 (26180): Guest Log: 00:00:00.000269 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-10 04:36:06 (26180): Guest Log: 00:00:00.000299 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-10 04:36:06 (26180): Guest Log: 00:00:00.000299 main     Process ID: 1383
2025-02-10 04:36:06 (26180): Guest Log: 00:00:00.000300 main     Package type: LINUX_64BITS_GENERIC
2025-02-10 04:36:06 (26180): Guest Log: 00:00:00.001131 main     5.2.32 r132073 started. Verbose level = 0
2025-02-10 04:36:07 (26180): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-10 04:36:07 (26180): Guest Log: [INFO] Mounting shared directory
2025-02-10 04:36:07 (26180): Guest Log: [INFO] Checking for init_data.xml
2025-02-10 04:36:11 (26180): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-10 04:36:11 (26180): Guest Log: [INFO] Detected branch: prod
2025-02-10 04:36:12 (26180): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-10 04:36:12 (26180): Guest Log: Copying input files
2025-02-10 04:36:13 (26180): Guest Log: Copied input files into RunAtlas.
2025-02-10 04:36:13 (26180): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-10 04:36:13 (26180): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-10 04:36:13 (26180): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-10 04:36:13 (26180): Guest Log: Further information can be found at the LHC@home message board.
2025-02-10 04:36:16 (26180): Guest Log: 00:00:10.006341 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 210 880 036 000ns (GuestNow=1 739 187 376 350 693 000 ns GuestLast=1 739 162 165 470 657 000 ns fSetTimeLastLoop=true )
2025-02-10 04:36:23 (26180): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-10 04:36:24 (26180): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-10 04:36:24 (26180): Guest Log: 2.6.3.0 1662 0 30148 142482 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-10 04:36:24 (26180): Guest Log: copied the webapp to /var/www
2025-02-10 04:36:24 (26180): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-10 04:36:24 (26180): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-10 04:36:26 (26180): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-10 04:36:26 (26180): Guest Log:  *** Starting ATLAS job. (PandaID=6508514510 taskID=43197887) ***
2025-02-10 06:15:49 (26180): Status Report: Elapsed Time: '6000.000000'
2025-02-10 06:15:49 (26180): Status Report: CPU Time: '13502.140625'
2025-02-10 07:55:54 (26180): Status Report: Elapsed Time: '12000.000000'
2025-02-10 07:55:54 (26180): Status Report: CPU Time: '33143.593750'
2025-02-10 09:35:58 (26180): Status Report: Elapsed Time: '18000.000000'
2025-02-10 09:35:58 (26180): Status Report: CPU Time: '52742.375000'
2025-02-10 10:02:54 (26180): Guest Log:  *** Job finished ***
2025-02-10 10:02:54 (26180): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:44,492 | INFO     | [payload] run_realtimelog thread has finished
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:44,644 | INFO     | [payload] validate_pre thread has finished
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:46,297 | INFO     | [data] queue_monitor thread has finished
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:47,012 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139966380590912)>', '<ExcThread(monitor, started 139965711238912)>']
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:47,956 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:47,956 | INFO     | [monitor] control thread has ended
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,024 | INFO     | all workflow threads have been joined
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,024 | INFO     | end of generic workflow (traces error code: 0)
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,024 | INFO     | traces error code: 0
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,024 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,116 [wrapper] ==== pilot stdout END ====
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,131 [wrapper] ==== wrapper stdout RESUME ====
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,155 [wrapper] pilotpid: 6059
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,169 [wrapper] Pilot exit status: 0
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,453 [wrapper] pandaids: 6508514510
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,530 [wrapper] cleanup supervisor_pilot 17026 6060
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,539 [wrapper] Test setup, not cleaning
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,551 [wrapper] apfmon messages muted
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,576 [wrapper] ==== wrapper stdout END ====
2025-02-10 10:02:54 (26180): Guest Log: 2025-02-10 17:02:52,596 [wrapper] ==== wrapper stderr END ====
2025-02-10 10:02:54 (26180): Guest Log:  *** Error codes and diagnostics ***
2025-02-10 10:02:54 (26180): Guest Log:     "exeErrorCode": 0,
2025-02-10 10:02:54 (26180): Guest Log:     "exeErrorDiag": "",
2025-02-10 10:02:54 (26180): Guest Log:     "pilotErrorCode": 0,
2025-02-10 10:02:54 (26180): Guest Log:     "pilotErrorDiag": "",
2025-02-10 10:02:54 (26180): Guest Log:  *** Listing of results directory ***
2025-02-10 10:02:54 (26180): Guest Log: total 309852
2025-02-10 10:02:54 (26180): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb  9 11:16 pilot3.tar.gz
2025-02-10 10:02:54 (26180): Guest Log: -rwx------. 1 atlas atlas     34924 Feb  9 11:20 runpilot2-wrapper.sh
2025-02-10 10:02:54 (26180): Guest Log: -rw-r--r--. 1 atlas atlas      5117 Feb  9 11:20 queuedata.json
2025-02-10 10:02:54 (26180): Guest Log: -rwxr-xr-x. 1 atlas atlas     12260 Feb 10 11:36 init_data.xml
2025-02-10 10:02:54 (26180): Guest Log: -rwxr-xr-x. 1 atlas atlas    503497 Feb 10 11:36 input.tar.gz
2025-02-10 10:02:54 (26180): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 10 11:36 start_atlas.sh
2025-02-10 10:02:54 (26180): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 10 11:36 EVNT.43092741._000152.pool.root.1 -> /data/./ATLAS.root_0
2025-02-10 10:02:54 (26180): Guest Log: -rw-r--r--. 1 atlas atlas      2526 Feb 10 11:36 pandaJob.out
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas       424 Feb 10 11:37 setup.sh.local
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas    983565 Feb 10 11:40 agis_schedconf.cvmfs.json
2025-02-10 10:02:54 (26180): Guest Log: drwx------. 4 atlas atlas      4096 Feb 10 11:41 pilot3
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas 310224716 Feb 10 17:01 HITS.43197887._014912.pool.root.1
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas      1031 Feb 10 17:02 memory_monitor_summary.json
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas   1587792 Feb 10 17:02 agis_ddmendpoints.agis.ALL.json
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas    404721 Feb 10 17:02 log.43197887._014912.job.log.tgz.1
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas        95 Feb 10 17:02 pilot_heartbeat.json
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas      7739 Feb 10 17:02 heartbeat.json
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas      4461 Feb 10 17:02 pilotlog.txt
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas   1260031 Feb 10 17:02 log.43197887._014912.job.log.1
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas       357 Feb 10 17:02 output.list
2025-02-10 10:02:54 (26180): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 10 17:02 runtime_log
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas   1679360 Feb 10 17:02 result.tar.gz
2025-02-10 10:02:54 (26180): Guest Log: -rw-r--r--. 1 atlas atlas     10966 Feb 10 17:02 runtime_log.err
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas       669 Feb 10 17:02 OrtLDmOXK16n9Rq4apOajLDm4fhM0noT9bVoFjIUDmh1MKDma86gEm.diag
2025-02-10 10:02:54 (26180): Guest Log: Looking for outputfile HITS.43197887._014912.pool.root.1
2025-02-10 10:02:54 (26180): Guest Log: HITS file was successfully produced
2025-02-10 10:02:54 (26180): Guest Log: -rw-------. 1 atlas atlas 310224716 Feb 10 17:01 /home/atlas/RunAtlas/HITS.43197887._014912.pool.root.1
2025-02-10 10:02:57 (26180): Guest Log: Successfully finished the ATLAS job!
2025-02-10 10:02:57 (26180): Guest Log: Copying the results back to the shared directory!
2025-02-10 10:02:57 (26180): Guest Log:  *** Contents of shared directory: ***
2025-02-10 10:02:57 (26180): Guest Log: total 630384
2025-02-10 10:02:57 (26180): Guest Log: -rwxrwxrwx. 1 root root 333066856 Feb 10 11:35 ATLAS.root_0
2025-02-10 10:02:57 (26180): Guest Log: -rwxrwxrwx. 1 root root 310224716 Feb 10 17:02 HITS.pool.root.1
2025-02-10 10:02:57 (26180): Guest Log: -rwxrwxrwx. 1 root root     12260 Feb 10 11:35 init_data.xml
2025-02-10 10:02:57 (26180): Guest Log: -rwxrwxrwx. 1 root root    503497 Feb  9 13:29 input.tar.gz
2025-02-10 10:02:57 (26180): Guest Log: -rwxrwxrwx. 1 root root   1679360 Feb 10 17:02 result.tar.gz
2025-02-10 10:02:57 (26180): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb  9 13:29 start_atlas.sh
2025-02-10 10:02:57 (26180): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-10 10:02:57 (26180): VM Completion File Detected.
2025-02-10 10:02:57 (26180): Powering off VM.
2025-02-10 10:02:58 (26180): Successfully stopped VM.
2025-02-10 10:02:58 (26180): Deregistering VM. (boinc_7f6a60839d835002, slot#2)
2025-02-10 10:02:58 (26180): Removing network bandwidth throttle group from VM.
2025-02-10 10:02:58 (26180): Removing VM from VirtualBox.
10:03:03 (26180): called boinc_finish(0)

</stderr_txt>
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