Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-10 09:24:33 (7916): Detected: vboxwrapper 26206
2025-02-10 09:24:33 (7916): Detected: BOINC client v8.0.2
2025-02-10 09:24:33 (7916): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-10 09:24:33 (7916): Successfully copied 'init_data.xml' to the shared directory.
2025-02-10 09:24:34 (7916): Create VM. (boinc_affea140d9858a8d, slot#3)
2025-02-10 09:24:35 (7916): Setting Memory Size for VM. (4800MB)
2025-02-10 09:24:35 (7916): Setting CPU Count for VM. (8)
2025-02-10 09:24:35 (7916): Setting Chipset Options for VM.
2025-02-10 09:24:36 (7916): Setting Graphics Controller Options for VM.
2025-02-10 09:24:36 (7916): Setting Boot Options for VM.
2025-02-10 09:24:36 (7916): Setting Network Configuration for NAT.
2025-02-10 09:24:37 (7916): Enabling VM Network Access.
2025-02-10 09:24:37 (7916): Disabling USB Support for VM.
2025-02-10 09:24:37 (7916): Disabling COM Port Support for VM.
2025-02-10 09:24:37 (7916): Disabling LPT Port Support for VM.
2025-02-10 09:24:38 (7916): Disabling Audio Support for VM.
2025-02-10 09:24:38 (7916): Disabling Clipboard Support for VM.
2025-02-10 09:24:38 (7916): Disabling Drag and Drop Support for VM.
2025-02-10 09:24:39 (7916): Adding storage controller(s) to VM.
2025-02-10 09:24:39 (7916): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-10 09:24:40 (7916): Adding VirtualBox Guest Additions to VM.
2025-02-10 09:24:40 (7916): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-10 09:24:40 (7916): forwarding host port 63363 to guest port 80
2025-02-10 09:24:40 (7916): Enabling remote desktop for VM.
2025-02-10 09:24:41 (7916): Required extension pack not installed, remote desktop not enabled.
2025-02-10 09:24:41 (7916): Enabling shared directory for VM.
2025-02-10 09:24:41 (7916): Starting VM using VBoxManage interface. (boinc_affea140d9858a8d, slot#3)
2025-02-10 09:24:46 (7916): Successfully started VM. (PID = '16728')
2025-02-10 09:24:46 (7916): Reporting VM Process ID to BOINC.
2025-02-10 09:24:46 (7916): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-10 09:24:46 (7916): Guest Log: CPUID EDX: 0x178bfbff
2025-02-10 09:24:46 (7916): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-10 09:24:46 (7916): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-10 09:24:46 (7916): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-10 09:24:46 (7916): Detected: Web Application Enabled (http://localhost:63363)
2025-02-10 09:24:46 (7916): Preference change detected
2025-02-10 09:24:46 (7916): Setting CPU throttle for VM. (50%)
2025-02-10 09:24:46 (7916): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-10 09:24:48 (7916): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-10 09:24:48 (7916): Guest Log: BIOS: Booting from Hard Disk...
2025-02-10 09:24:51 (7916): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-10 09:24:51 (7916): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-10 09:24:51 (7916): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-10 09:25:01 (7916): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-10 09:25:01 (7916): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-10 09:25:11 (7916): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-10 09:25:11 (7916): Guest Log: 00:00:00.000100 main     Log opened 2025-02-10T09:25:09.143653000Z
2025-02-10 09:25:11 (7916): Guest Log: 00:00:00.000216 main     OS Product: Linux
2025-02-10 09:25:11 (7916): Guest Log: 00:00:00.000252 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-10 09:25:11 (7916): Guest Log: 00:00:00.000282 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-10 09:25:11 (7916): Guest Log: 00:00:00.000311 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-10 09:25:11 (7916): Guest Log: 00:00:00.000312 main     Process ID: 1366
2025-02-10 09:25:11 (7916): Guest Log: 00:00:00.000312 main     Package type: LINUX_64BITS_GENERIC
2025-02-10 09:25:11 (7916): Guest Log: 00:00:00.001278 main     5.2.32 r132073 started. Verbose level = 0
2025-02-10 09:25:11 (7916): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-10 09:25:11 (7916): Guest Log: [INFO] Mounting shared directory
2025-02-10 09:25:11 (7916): Guest Log: [INFO] Checking for init_data.xml
2025-02-10 09:25:17 (7916): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-10 09:25:17 (7916): Guest Log: [INFO] Detected branch: prod
2025-02-10 09:25:18 (7916): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-10 09:25:18 (7916): Guest Log: Copying input files
2025-02-10 09:25:20 (7916): Guest Log: Copied input files into RunAtlas.
2025-02-10 09:25:20 (7916): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-10 09:25:20 (7916): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-10 09:25:20 (7916): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-10 09:25:20 (7916): Guest Log: Further information can be found at the LHC@home message board.
2025-02-10 09:25:21 (7916): Guest Log: 00:00:10.013798 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 211 699 262 000ns (GuestNow=1 739 204 720 846 288 000 ns GuestLast=1 739 179 509 147 026 000 ns fSetTimeLastLoop=true )
2025-02-10 09:25:31 (7916): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-10 09:25:31 (7916): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-10 09:25:31 (7916): Guest Log: 2.6.3.0 1649 0 32012 142490 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-10 09:25:33 (7916): Guest Log: copied the webapp to /var/www
2025-02-10 09:25:33 (7916): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-10 09:25:33 (7916): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-10 09:25:33 (7916): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-10 09:25:33 (7916): Guest Log:  *** Starting ATLAS job. (PandaID=6508419411 taskID=43205094) ***
2025-02-10 11:04:50 (7916): Status Report: Elapsed Time: '6000.000000'
2025-02-10 11:04:50 (7916): Status Report: CPU Time: '15890.390625'
2025-02-10 12:44:54 (7916): Status Report: Elapsed Time: '12000.000000'
2025-02-10 12:44:54 (7916): Status Report: CPU Time: '36256.562500'
2025-02-10 13:12:05 (7916): VM state change detected. (old = 'running', new = 'paused')
2025-02-10 14:13:11 (7916): VM state change detected. (old = 'paused', new = 'running')
2025-02-10 14:13:13 (7916): Guest Log: 03:46:56.446474 timesync vgsvcTimeSyncWorker: Radical host time change: 3 675 374 000 000ns (HostNow=1 739 221 992 608 000 000 ns HostLast=1 739 218 317 234 000 000 ns)
2025-02-10 14:13:23 (7916): Guest Log: 03:47:06.449869 timesync vgsvcTimeSyncWorker: Radical guest time change: 3 675 333 367 000ns (GuestNow=1 739 222 002 611 763 000 ns GuestLast=1 739 218 327 278 396 000 ns fSetTimeLastLoop=true )
2025-02-10 15:20:01 (7916): Guest Log:  *** Job finished ***
2025-02-10 15:20:01 (7916): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:48,637 | INFO     | [data] queue_monitor thread has finished
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:52,000 | INFO     | job.realtimelogging is not enabled
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:53,001 | INFO     | [payload] run_realtimelog thread has finished
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:53,680 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140201709938496)>', '<ExcThread(monitor, started 140200592262912)>']
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:54,010 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:54,010 | INFO     | [monitor] control thread has ended
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:58,719 | INFO     | all workflow threads have been joined
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:58,720 | INFO     | end of generic workflow (traces error code: 0)
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:58,720 | INFO     | traces error code: 0
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:58,720 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:58,789 [wrapper] ==== pilot stdout END ====
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:58,793 [wrapper] ==== wrapper stdout RESUME ====
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:58,798 [wrapper] pilotpid: 6032
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:58,802 [wrapper] Pilot exit status: 0
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:58,917 [wrapper] pandaids: 6508419411
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:58,970 [wrapper] cleanup supervisor_pilot 18521 6033
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:58,988 [wrapper] Test setup, not cleaning
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:59,011 [wrapper] apfmon messages muted
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:59,016 [wrapper] ==== wrapper stdout END ====
2025-02-10 15:20:01 (7916): Guest Log: 2025-02-10 22:19:59,020 [wrapper] ==== wrapper stderr END ====
2025-02-10 15:20:01 (7916): Guest Log:  *** Error codes and diagnostics ***
2025-02-10 15:20:01 (7916): Guest Log:     "exeErrorCode": 0,
2025-02-10 15:20:01 (7916): Guest Log:     "exeErrorDiag": "",
2025-02-10 15:20:01 (7916): Guest Log:     "pilotErrorCode": 0,
2025-02-10 15:20:01 (7916): Guest Log:     "pilotErrorDiag": "",
2025-02-10 15:20:01 (7916): Guest Log:  *** Listing of results directory ***
2025-02-10 15:20:01 (7916): Guest Log: total 325060
2025-02-10 15:20:01 (7916): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb  9 11:06 pilot3.tar.gz
2025-02-10 15:20:01 (7916): Guest Log: -rw-r--r--. 1 atlas atlas      5117 Feb  9 11:10 queuedata.json
2025-02-10 15:20:01 (7916): Guest Log: -rwx------. 1 atlas atlas     34924 Feb  9 11:10 runpilot2-wrapper.sh
2025-02-10 15:20:01 (7916): Guest Log: -rwxr-xr-x. 1 atlas atlas     12260 Feb 10 16:25 init_data.xml
2025-02-10 15:20:01 (7916): Guest Log: -rwxr-xr-x. 1 atlas atlas    503498 Feb 10 16:25 input.tar.gz
2025-02-10 15:20:01 (7916): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 10 16:25 start_atlas.sh
2025-02-10 15:20:01 (7916): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 10 16:25 EVNT.43092757._001418.pool.root.1 -> /data/./ATLAS.root_0
2025-02-10 15:20:01 (7916): Guest Log: -rw-r--r--. 1 atlas atlas      2546 Feb 10 16:25 pandaJob.out
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas       424 Feb 10 16:25 setup.sh.local
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas    983237 Feb 10 16:27 agis_schedconf.cvmfs.json
2025-02-10 15:20:01 (7916): Guest Log: drwx------. 4 atlas atlas      4096 Feb 10 16:27 pilot3
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas 326066799 Feb 10 22:18 HITS.43205094._005689.pool.root.1
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas      1031 Feb 10 22:19 memory_monitor_summary.json
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas   1587792 Feb 10 22:19 agis_ddmendpoints.agis.ALL.json
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas    385196 Feb 10 22:19 log.43205094._005689.job.log.tgz.1
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas        97 Feb 10 22:19 pilot_heartbeat.json
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas      7739 Feb 10 22:19 heartbeat.json
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas      4656 Feb 10 22:19 pilotlog.txt
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas   1137600 Feb 10 22:19 log.43205094._005689.job.log.1
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas       357 Feb 10 22:19 output.list
2025-02-10 15:20:01 (7916): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 10 22:19 runtime_log
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas   1546240 Feb 10 22:19 result.tar.gz
2025-02-10 15:20:01 (7916): Guest Log: -rw-r--r--. 1 atlas atlas     10966 Feb 10 22:19 runtime_log.err
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas       669 Feb 10 22:19 fvIKDmCOK16n9Rq4apOajLDm4fhM0noT9bVoFjIUDmJ0MKDmsvLUPn.diag
2025-02-10 15:20:01 (7916): Guest Log: Looking for outputfile HITS.43205094._005689.pool.root.1
2025-02-10 15:20:01 (7916): Guest Log: HITS file was successfully produced
2025-02-10 15:20:01 (7916): Guest Log: -rw-------. 1 atlas atlas 326066799 Feb 10 22:18 /home/atlas/RunAtlas/HITS.43205094._005689.pool.root.1
2025-02-10 15:20:03 (7916): Guest Log: Successfully finished the ATLAS job!
2025-02-10 15:20:03 (7916): Guest Log: Copying the results back to the shared directory!
2025-02-10 15:20:03 (7916): Guest Log:  *** Contents of shared directory: ***
2025-02-10 15:20:04 (7916): Guest Log: total 653752
2025-02-10 15:20:04 (7916): Guest Log: -rwxrwxrwx. 1 root root 341286530 Feb 10 16:24 ATLAS.root_0
2025-02-10 15:20:04 (7916): Guest Log: -rwxrwxrwx. 1 root root 326066799 Feb 10 22:20 HITS.pool.root.1
2025-02-10 15:20:04 (7916): Guest Log: -rwxrwxrwx. 1 root root     12260 Feb 10 16:24 init_data.xml
2025-02-10 15:20:04 (7916): Guest Log: -rwxrwxrwx. 1 root root    503498 Feb  9 13:27 input.tar.gz
2025-02-10 15:20:04 (7916): Guest Log: -rwxrwxrwx. 1 root root   1546240 Feb 10 22:20 result.tar.gz
2025-02-10 15:20:04 (7916): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb  9 13:27 start_atlas.sh
2025-02-10 15:20:04 (7916): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-10 15:20:04 (7916): VM Completion File Detected.
2025-02-10 15:20:04 (7916): Powering off VM.
2025-02-10 15:20:04 (7916): Successfully stopped VM.
2025-02-10 15:20:04 (7916): Deregistering VM. (boinc_affea140d9858a8d, slot#3)
2025-02-10 15:20:04 (7916): Removing network bandwidth throttle group from VM.
2025-02-10 15:20:04 (7916): Removing VM from VirtualBox.
15:20:10 (7916): called boinc_finish(0)

</stderr_txt>
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