Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-08 22:25:22 (7419): Detected: vboxwrapper 26206
2025-02-08 22:25:22 (7419): Detected: BOINC client v8.1.0
2025-02-08 22:25:22 (7419): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-02-08 22:25:22 (7419): Successfully copied 'init_data.xml' to the shared directory.
2025-02-08 22:25:22 (7419): Create VM. (boinc_22148042fcfaeb3b, slot#7)
2025-02-08 22:25:23 (7419): Setting Memory Size for VM. (4200MB)
2025-02-08 22:25:23 (7419): Setting CPU Count for VM. (2)
2025-02-08 22:25:23 (7419): Setting Chipset Options for VM.
2025-02-08 22:25:23 (7419): Setting Graphics Controller Options for VM.
2025-02-08 22:25:23 (7419): Setting Boot Options for VM.
2025-02-08 22:25:23 (7419): Setting Network Configuration for NAT.
2025-02-08 22:25:23 (7419): Enabling VM Network Access.
2025-02-08 22:25:24 (7419): Disabling USB Support for VM.
2025-02-08 22:25:24 (7419): Disabling COM Port Support for VM.
2025-02-08 22:25:24 (7419): Disabling LPT Port Support for VM.
2025-02-08 22:25:24 (7419): Disabling Audio Support for VM.
2025-02-08 22:25:24 (7419): Disabling Clipboard Support for VM.
2025-02-08 22:25:25 (7419): Disabling Drag and Drop Support for VM.
2025-02-08 22:25:25 (7419): Adding storage controller(s) to VM.
2025-02-08 22:25:25 (7419): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-08 22:25:27 (7419): Adding VirtualBox Guest Additions to VM.
2025-02-08 22:25:27 (7419): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-08 22:25:27 (7419): forwarding host port 58595 to guest port 80
2025-02-08 22:25:28 (7419): Enabling remote desktop for VM.
2025-02-08 22:25:28 (7419): Required extension pack not installed, remote desktop not enabled.
2025-02-08 22:25:28 (7419): Enabling shared directory for VM.
2025-02-08 22:25:28 (7419): Starting VM using VBoxManage interface. (boinc_22148042fcfaeb3b, slot#7)
2025-02-08 22:25:29 (7419): Successfully started VM. (PID = '7962')
2025-02-08 22:25:29 (7419): Reporting VM Process ID to BOINC.
2025-02-08 22:25:29 (7419): Guest Log: BIOS: VirtualBox 7.1.4
2025-02-08 22:25:29 (7419): Guest Log: CPUID EDX: 0x178bfbff
2025-02-08 22:25:29 (7419): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-08 22:25:29 (7419): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-08 22:25:29 (7419): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-08 22:25:29 (7419): Detected: Web Application Enabled (http://localhost:58595)
2025-02-08 22:25:29 (7419): Preference change detected
2025-02-08 22:25:29 (7419): Setting CPU throttle for VM. (100%)
2025-02-08 22:25:29 (7419): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-08 22:25:31 (7419): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-08 22:25:31 (7419): Guest Log: BIOS: Booting from Hard Disk...
2025-02-08 22:25:34 (7419): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-08 22:25:34 (7419): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-08 22:25:34 (7419): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-08 22:25:44 (7419): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-08 22:25:44 (7419): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-08 22:26:22 (7419): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-08 22:26:22 (7419): Guest Log: 00:00:00.000208 main     Log opened 2025-02-09T03:26:20.549376000Z
2025-02-08 22:26:22 (7419): Guest Log: 00:00:00.000318 main     OS Product: Linux
2025-02-08 22:26:22 (7419): Guest Log: 00:00:00.000343 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-08 22:26:22 (7419): Guest Log: 00:00:00.000360 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-08 22:26:22 (7419): Guest Log: 00:00:00.000388 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-08 22:26:22 (7419): Guest Log: 00:00:00.000389 main     Process ID: 1289
2025-02-08 22:26:22 (7419): Guest Log: 00:00:00.000390 main     Package type: LINUX_64BITS_GENERIC
2025-02-08 22:26:22 (7419): Guest Log: 00:00:00.002508 main     5.2.32 r132073 started. Verbose level = 0
2025-02-08 22:26:23 (7419): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-08 22:26:23 (7419): Guest Log: [INFO] Mounting shared directory
2025-02-08 22:26:23 (7419): Guest Log: [INFO] Checking for init_data.xml
2025-02-08 22:26:34 (7419): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-08 22:26:34 (7419): Guest Log: [INFO] Detected branch: prod
2025-02-08 22:26:34 (7419): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-08 22:26:34 (7419): Guest Log: Copying input files
2025-02-08 22:26:35 (7419): Guest Log: Copied input files into RunAtlas.
2025-02-08 22:26:35 (7419): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-08 22:26:35 (7419): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-08 22:26:35 (7419): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-08 22:26:35 (7419): Guest Log: Further information can be found at the LHC@home message board.
2025-02-08 22:26:55 (7419): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-08 22:26:56 (7419): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-08 22:26:56 (7419): Guest Log: 2.6.3.0 1565 0 30080 142434 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-08 22:27:02 (7419): Guest Log: copied the webapp to /var/www
2025-02-08 22:27:02 (7419): Guest Log: ATHENA_PROC_NUMBER=2
2025-02-08 22:27:02 (7419): Guest Log: ATHENA_CORE_NUMBER=2
2025-02-08 22:27:03 (7419): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-08 22:27:03 (7419): Guest Log:  *** Starting ATLAS job. (PandaID=6508323920 taskID=43205094) ***
2025-02-09 00:04:31 (7419): Status Report: Elapsed Time: '6000.000000'
2025-02-09 00:04:31 (7419): Status Report: CPU Time: '9757.570000'
2025-02-09 01:43:32 (7419): Status Report: Elapsed Time: '12000.000000'
2025-02-09 01:43:32 (7419): Status Report: CPU Time: '21613.220000'
2025-02-09 03:22:33 (7419): Status Report: Elapsed Time: '18000.000000'
2025-02-09 03:22:33 (7419): Status Report: CPU Time: '33465.920000'
2025-02-09 05:01:34 (7419): Status Report: Elapsed Time: '24000.000000'
2025-02-09 05:01:34 (7419): Status Report: CPU Time: '45314.210000'
2025-02-09 06:40:35 (7419): Status Report: Elapsed Time: '30000.000000'
2025-02-09 06:40:35 (7419): Status Report: CPU Time: '57167.310000'
2025-02-09 07:31:38 (7419): Guest Log:  *** Job finished ***
2025-02-09 07:31:38 (7419): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:28,046 | INFO     | [data] copytool_in thread has finished
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:28,734 | INFO     | [data] copytool_out thread has finished
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:30,760 | INFO     | [data] queue_monitor thread has finished
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:32,802 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139724602836800)>', '<ExcThread(monitor, started 139723926394624)>']
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:33,636 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:33,636 | INFO     | [monitor] control thread has ended
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:37,807 | INFO     | all workflow threads have been joined
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:37,807 | INFO     | end of generic workflow (traces error code: 0)
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:37,807 | INFO     | traces error code: 0
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:37,808 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:37,963 [wrapper] ==== pilot stdout END ====
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:37,971 [wrapper] ==== wrapper stdout RESUME ====
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:37,984 [wrapper] pilotpid: 5904
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:37,989 [wrapper] Pilot exit status: 0
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:38,238 [wrapper] pandaids: 6508323920
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:38,301 [wrapper] cleanup supervisor_pilot 14288 5905
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:38,305 [wrapper] Test setup, not cleaning
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:38,314 [wrapper] apfmon messages muted
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:38,319 [wrapper] ==== wrapper stdout END ====
2025-02-09 07:31:38 (7419): Guest Log: 2025-02-09 12:31:38,323 [wrapper] ==== wrapper stderr END ====
2025-02-09 07:31:38 (7419): Guest Log:  *** Error codes and diagnostics ***
2025-02-09 07:31:38 (7419): Guest Log:     "exeErrorCode": 0,
2025-02-09 07:31:38 (7419): Guest Log:     "exeErrorDiag": "",
2025-02-09 07:31:38 (7419): Guest Log:     "pilotErrorCode": 0,
2025-02-09 07:31:38 (7419): Guest Log:     "pilotErrorDiag": "",
2025-02-09 07:31:38 (7419): Guest Log:  *** Listing of results directory ***
2025-02-09 07:31:38 (7419): Guest Log: total 334884
2025-02-09 07:31:38 (7419): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb  9 01:09 pilot3.tar.gz
2025-02-09 07:31:38 (7419): Guest Log: -rwx------. 1 atlas atlas     34924 Feb  9 01:25 runpilot2-wrapper.sh
2025-02-09 07:31:38 (7419): Guest Log: -rw-r--r--. 1 atlas atlas      5117 Feb  9 01:25 queuedata.json
2025-02-09 07:31:38 (7419): Guest Log: -rw-r--r--. 1 atlas atlas      9080 Feb  9 03:26 init_data.xml
2025-02-09 07:31:38 (7419): Guest Log: -rw-r--r--. 1 atlas atlas    503493 Feb  9 03:26 input.tar.gz
2025-02-09 07:31:38 (7419): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Feb  9 03:26 start_atlas.sh
2025-02-09 07:31:38 (7419): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb  9 03:26 EVNT.43092757._001301.pool.root.1 -> /data/./ATLAS.root_0
2025-02-09 07:31:38 (7419): Guest Log: -rw-r--r--. 1 atlas atlas      2546 Feb  9 03:27 pandaJob.out
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas       424 Feb  9 03:27 setup.sh.local
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas    983543 Feb  9 03:28 agis_schedconf.cvmfs.json
2025-02-09 07:31:38 (7419): Guest Log: drwx------. 4 atlas atlas      4096 Feb  9 03:28 pilot3
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas 331817484 Feb  9 12:29 HITS.43205094._002557.pool.root.1
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas      1032 Feb  9 12:30 memory_monitor_summary.json
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas   1587792 Feb  9 12:30 agis_ddmendpoints.agis.ALL.json
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas    472195 Feb  9 12:30 log.43205094._002557.job.log.tgz.1
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas        95 Feb  9 12:31 pilot_heartbeat.json
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas      7715 Feb  9 12:31 heartbeat.json
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas      4398 Feb  9 12:31 pilotlog.txt
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas   3208125 Feb  9 12:31 log.43205094._002557.job.log.1
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas       357 Feb  9 12:31 output.list
2025-02-09 07:31:38 (7419): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb  9 12:31 runtime_log
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas   3696640 Feb  9 12:31 result.tar.gz
2025-02-09 07:31:38 (7419): Guest Log: -rw-r--r--. 1 atlas atlas     10926 Feb  9 12:31 runtime_log.err
2025-02-09 07:31:38 (7419): Guest Log: -rw-------. 1 atlas atlas       658 Feb  9 12:31 jjRNDmNFB16nsSi4ap6QjLDmwznN0nGgGQJmkKkKDm1JQKDmx2BDsm.diag
2025-02-09 07:31:39 (7419): Guest Log: Looking for outputfile HITS.43205094._002557.pool.root.1
2025-02-09 07:31:39 (7419): Guest Log: HITS file was successfully produced
2025-02-09 07:31:39 (7419): Guest Log: -rw-------. 1 atlas atlas 331817484 Feb  9 12:29 /home/atlas/RunAtlas/HITS.43205094._002557.pool.root.1
2025-02-09 07:31:39 (7419): Guest Log: Successfully finished the ATLAS job!
2025-02-09 07:31:39 (7419): Guest Log: Copying the results back to the shared directory!
2025-02-09 07:31:39 (7419): Guest Log:  *** Contents of shared directory: ***
2025-02-09 07:31:39 (7419): Guest Log: total 340224
2025-02-09 07:31:39 (7419): Guest Log: -rw-r--r--. 1 root root 344147585 Feb  9 03:25 ATLAS.root_0
2025-02-09 07:31:39 (7419): Guest Log: -rw-r--r--. 1 root root      9080 Feb  9 03:25 init_data.xml
2025-02-09 07:31:39 (7419): Guest Log: -rw-r--r--. 1 root root    503493 Feb  9 03:25 input.tar.gz
2025-02-09 07:31:39 (7419): Guest Log: -rw-r--r--. 1 root root   3696640 Feb  9 12:31 result.tar.gz
2025-02-09 07:31:39 (7419): Guest Log: -rw-r--r--. 1 root root     17569 Feb  9 03:25 start_atlas.sh
2025-02-09 07:31:39 (7419): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-09 07:31:39 (7419): VM Completion File Detected.
2025-02-09 07:31:39 (7419): Powering off VM.
2025-02-09 07:31:40 (7419): Successfully stopped VM.
2025-02-09 07:31:40 (7419): Deregistering VM. (boinc_22148042fcfaeb3b, slot#7)
2025-02-09 07:31:40 (7419): Removing network bandwidth throttle group from VM.
2025-02-09 07:31:41 (7419): Removing VM from VirtualBox.
07:31:46 (7419): called boinc_finish(0)

</stderr_txt>
]]>

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