Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-13 14:37:11 (3732): Detected: vboxwrapper 26206
2025-02-13 14:37:11 (3732): Detected: BOINC client v8.0.2
2025-02-13 14:37:14 (3732): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-13 14:37:15 (3732): Successfully copied 'init_data.xml' to the shared directory.
2025-02-13 14:37:15 (3732): Create VM. (boinc_60d08205b21f0f87, slot#3)
2025-02-13 14:37:16 (3732): Setting Memory Size for VM. (4400MB)
2025-02-13 14:37:16 (3732): Setting CPU Count for VM. (4)
2025-02-13 14:37:17 (3732): Setting Chipset Options for VM.
2025-02-13 14:37:17 (3732): Setting Graphics Controller Options for VM.
2025-02-13 14:37:18 (3732): Setting Boot Options for VM.
2025-02-13 14:37:18 (3732): Setting Network Configuration for NAT.
2025-02-13 14:37:18 (3732): Enabling VM Network Access.
2025-02-13 14:37:18 (3732): Disabling USB Support for VM.
2025-02-13 14:37:19 (3732): Disabling COM Port Support for VM.
2025-02-13 14:37:19 (3732): Disabling LPT Port Support for VM.
2025-02-13 14:37:19 (3732): Disabling Audio Support for VM.
2025-02-13 14:37:20 (3732): Disabling Clipboard Support for VM.
2025-02-13 14:37:20 (3732): Disabling Drag and Drop Support for VM.
2025-02-13 14:37:20 (3732): Adding storage controller(s) to VM.
2025-02-13 14:37:21 (3732): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-13 14:37:24 (3732): Adding VirtualBox Guest Additions to VM.
2025-02-13 14:37:24 (3732): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-13 14:37:25 (3732): forwarding host port 56935 to guest port 80
2025-02-13 14:37:25 (3732): Enabling remote desktop for VM.
2025-02-13 14:37:25 (3732): Required extension pack not installed, remote desktop not enabled.
2025-02-13 14:37:25 (3732): Enabling shared directory for VM.
2025-02-13 14:37:26 (3732): Starting VM using VBoxManage interface. (boinc_60d08205b21f0f87, slot#3)
2025-02-13 14:37:57 (3732): Successfully started VM. (PID = '10580')
2025-02-13 14:37:57 (3732): Reporting VM Process ID to BOINC.
2025-02-13 14:37:57 (3732): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-13 14:37:57 (3732): Guest Log: CPUID EDX: 0x178bfbff
2025-02-13 14:37:57 (3732): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-13 14:37:57 (3732): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-13 14:37:57 (3732): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-13 14:37:57 (3732): Detected: Web Application Enabled (http://localhost:56935)
2025-02-13 14:37:57 (3732): Preference change detected
2025-02-13 14:37:57 (3732): Setting CPU throttle for VM. (100%)
2025-02-13 14:37:58 (3732): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-13 14:38:00 (3732): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-13 14:38:00 (3732): Guest Log: BIOS: Booting from Hard Disk...
2025-02-13 14:38:07 (3732): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-13 14:38:07 (3732): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-13 14:38:07 (3732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-13 14:38:29 (3732): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-13 14:38:29 (3732): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-13 14:39:09 (3732): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-13 14:39:09 (3732): Guest Log: 00:00:00.001786 main     Log opened 2025-02-13T14:39:06.598825000Z
2025-02-13 14:39:09 (3732): Guest Log: 00:00:00.003976 main     OS Product: Linux
2025-02-13 14:39:09 (3732): Guest Log: 00:00:00.005515 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-13 14:39:09 (3732): Guest Log: 00:00:00.006655 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-13 14:39:09 (3732): Guest Log: 00:00:00.007710 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-13 14:39:09 (3732): Guest Log: 00:00:00.007741 main     Process ID: 1332
2025-02-13 14:39:09 (3732): Guest Log: 00:00:00.007745 main     Package type: LINUX_64BITS_GENERIC
2025-02-13 14:39:09 (3732): Guest Log: 00:00:00.027997 main     5.2.32 r132073 started. Verbose level = 0
2025-02-13 14:39:09 (3732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-13 14:39:09 (3732): Guest Log: [INFO] Mounting shared directory
2025-02-13 14:39:09 (3732): Guest Log: [INFO] Checking for init_data.xml
2025-02-13 14:39:15 (3732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-13 14:39:15 (3732): Guest Log: [INFO] Detected branch: prod
2025-02-13 14:39:15 (3732): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-13 14:39:15 (3732): Guest Log: Copying input files
2025-02-13 14:39:19 (3732): Guest Log: 00:00:10.058349 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 207 590 000ns (GuestNow=1 739 453 958 445 901 000 ns GuestLast=1 739 457 546 653 491 000 ns fSetTimeLastLoop=true )
2025-02-13 14:39:23 (3732): Guest Log: Copied input files into RunAtlas.
2025-02-13 14:39:23 (3732): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-13 14:39:23 (3732): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-13 14:39:23 (3732): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-13 14:39:23 (3732): Guest Log: Further information can be found at the LHC@home message board.
2025-02-13 14:39:35 (3732): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-13 14:39:35 (3732): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-13 14:39:35 (3732): Guest Log: 2.6.3.0 1609 0 32028 142602 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-02-13 14:39:43 (3732): Guest Log: copied the webapp to /var/www
2025-02-13 14:39:43 (3732): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-13 14:39:43 (3732): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-13 14:39:44 (3732): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-13 14:39:44 (3732): Guest Log:  *** Starting ATLAS job. (PandaID=6508302608 taskID=43197887) ***
2025-02-13 16:25:26 (3732): Status Report: Elapsed Time: '6000.194290'
2025-02-13 16:25:26 (3732): Status Report: CPU Time: '19435.062500'
2025-02-13 18:16:09 (3732): Status Report: Elapsed Time: '12000.483223'
2025-02-13 18:16:09 (3732): Status Report: CPU Time: '45801.468750'
2025-02-13 20:05:11 (3732): Status Report: Elapsed Time: '18001.380575'
2025-02-13 20:05:11 (3732): Status Report: CPU Time: '71744.968750'
2025-02-13 21:56:04 (3732): Status Report: Elapsed Time: '24001.517006'
2025-02-13 21:56:04 (3732): Status Report: CPU Time: '98002.656250'
2025-02-13 22:13:16 (3732): Guest Log:  *** Job finished ***
2025-02-13 22:13:16 (3732): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:01,299 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:02,341 | INFO     | [job] queue monitor thread has finished
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:05,338 | INFO     | [data] queue_monitor thread has finished
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:07,136 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862261585728)>', '<ExcThread(monitor, started 139861231130368)>']
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:07,754 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:07,759 | INFO     | [monitor] control thread has ended
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:12,157 | INFO     | all workflow threads have been joined
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:12,165 | INFO     | end of generic workflow (traces error code: 0)
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:12,179 | INFO     | traces error code: 0
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:12,194 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:12,666 [wrapper] ==== pilot stdout END ====
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:12,761 [wrapper] ==== wrapper stdout RESUME ====
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:12,781 [wrapper] pilotpid: 5958
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:12,795 [wrapper] Pilot exit status: 0
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:13,038 [wrapper] pandaids: 6508302608
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:13,153 [wrapper] cleanup supervisor_pilot  4824 5959
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:13,207 [wrapper] Test setup, not cleaning
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:13,313 [wrapper] apfmon messages muted
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:13,328 [wrapper] ==== wrapper stdout END ====
2025-02-13 22:13:16 (3732): Guest Log: 2025-02-13 21:13:13,359 [wrapper] ==== wrapper stderr END ====
2025-02-13 22:13:16 (3732): Guest Log:  *** Error codes and diagnostics ***
2025-02-13 22:13:16 (3732): Guest Log:     "exeErrorCode": 0,
2025-02-13 22:13:16 (3732): Guest Log:     "exeErrorDiag": "",
2025-02-13 22:13:16 (3732): Guest Log:     "pilotErrorCode": 0,
2025-02-13 22:13:16 (3732): Guest Log:     "pilotErrorDiag": "",
2025-02-13 22:13:16 (3732): Guest Log:  *** Listing of results directory ***
2025-02-13 22:13:16 (3732): Guest Log: total 312884
2025-02-13 22:13:16 (3732): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb  8 21:39 pilot3.tar.gz
2025-02-13 22:13:16 (3732): Guest Log: -rw-r--r--. 1 atlas atlas      5117 Feb  8 21:46 queuedata.json
2025-02-13 22:13:16 (3732): Guest Log: -rwx------. 1 atlas atlas     34924 Feb  8 21:47 runpilot2-wrapper.sh
2025-02-13 22:13:16 (3732): Guest Log: -rwxr-xr-x. 1 atlas atlas      9501 Feb 13 13:39 init_data.xml
2025-02-13 22:13:16 (3732): Guest Log: -rwxr-xr-x. 1 atlas atlas    503500 Feb 13 13:39 input.tar.gz
2025-02-13 22:13:16 (3732): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 13 13:39 start_atlas.sh
2025-02-13 22:13:16 (3732): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 13 13:39 EVNT.43092741._000214.pool.root.1 -> /data/./ATLAS.root_0
2025-02-13 22:13:16 (3732): Guest Log: -rw-r--r--. 1 atlas atlas      2526 Feb 13 13:39 pandaJob.out
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas       424 Feb 13 13:39 setup.sh.local
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas    986907 Feb 13 13:41 agis_schedconf.cvmfs.json
2025-02-13 22:13:16 (3732): Guest Log: drwx------. 4 atlas atlas      4096 Feb 13 13:41 pilot3
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas 309965172 Feb 13 21:10 HITS.43197887._012296.pool.root.1
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas        95 Feb 13 21:12 pilot_heartbeat.json
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas      1046 Feb 13 21:12 memory_monitor_summary.json
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas   1591814 Feb 13 21:12 agis_ddmendpoints.agis.ALL.json
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas    464093 Feb 13 21:12 log.43197887._012296.job.log.tgz.1
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas      7740 Feb 13 21:12 heartbeat.json
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas      4398 Feb 13 21:13 pilotlog.txt
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas   2878403 Feb 13 21:13 log.43197887._012296.job.log.1
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas       357 Feb 13 21:13 output.list
2025-02-13 22:13:16 (3732): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 13 21:13 runtime_log
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas   3358720 Feb 13 21:13 result.tar.gz
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas       657 Feb 13 21:13 VM4LDmdq706nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmNhPKDmTdiOun.diag
2025-02-13 22:13:16 (3732): Guest Log: -rw-r--r--. 1 atlas atlas     10936 Feb 13 21:13 runtime_log.err
2025-02-13 22:13:16 (3732): Guest Log: Looking for outputfile HITS.43197887._012296.pool.root.1
2025-02-13 22:13:16 (3732): Guest Log: HITS file was successfully produced
2025-02-13 22:13:16 (3732): Guest Log: -rw-------. 1 atlas atlas 309965172 Feb 13 21:10 /home/atlas/RunAtlas/HITS.43197887._012296.pool.root.1
2025-02-13 22:13:23 (3732): Guest Log: Successfully finished the ATLAS job!
2025-02-13 22:13:23 (3732): Guest Log: Copying the results back to the shared directory!
2025-02-13 22:13:23 (3732): Guest Log:  *** Contents of shared directory: ***
2025-02-13 22:13:23 (3732): Guest Log: total 631072
2025-02-13 22:13:23 (3732): Guest Log: -rwxrwxrwx. 1 root root 332349667 Feb 13 13:37 ATLAS.root_0
2025-02-13 22:13:23 (3732): Guest Log: -rwxrwxrwx. 1 root root 309965172 Feb 13 21:13 HITS.pool.root.1
2025-02-13 22:13:23 (3732): Guest Log: -rwxrwxrwx. 1 root root      9501 Feb 13 13:37 init_data.xml
2025-02-13 22:13:23 (3732): Guest Log: -rwxrwxrwx. 1 root root    503500 Feb  8 23:37 input.tar.gz
2025-02-13 22:13:23 (3732): Guest Log: -rwxrwxrwx. 1 root root   3358720 Feb 13 21:13 result.tar.gz
2025-02-13 22:13:23 (3732): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb  8 23:37 start_atlas.sh
2025-02-13 22:13:23 (3732): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-13 22:13:23 (3732): VM Completion File Detected.
2025-02-13 22:13:23 (3732): Powering off VM.
2025-02-13 22:13:28 (3732): Successfully stopped VM.
2025-02-13 22:13:28 (3732): Deregistering VM. (boinc_60d08205b21f0f87, slot#3)
2025-02-13 22:13:28 (3732): Removing network bandwidth throttle group from VM.
2025-02-13 22:13:29 (3732): Removing VM from VirtualBox.
22:13:34 (3732): called boinc_finish(0)

</stderr_txt>
]]>

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