Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-13 06:44:18 (9732): Detected: vboxwrapper 26206
2025-02-13 06:44:18 (9732): Detected: BOINC client v8.0.2
2025-02-13 06:44:22 (9732): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-13 06:44:23 (9732): Successfully copied 'init_data.xml' to the shared directory.
2025-02-13 06:44:23 (9732): Create VM. (boinc_3439c855c3a83fc4, slot#3)
2025-02-13 06:44:25 (9732): Setting Memory Size for VM. (4400MB)
2025-02-13 06:44:25 (9732): Setting CPU Count for VM. (4)
2025-02-13 06:44:25 (9732): Setting Chipset Options for VM.
2025-02-13 06:44:25 (9732): Setting Graphics Controller Options for VM.
2025-02-13 06:44:26 (9732): Setting Boot Options for VM.
2025-02-13 06:44:26 (9732): Setting Network Configuration for NAT.
2025-02-13 06:44:26 (9732): Enabling VM Network Access.
2025-02-13 06:44:27 (9732): Disabling USB Support for VM.
2025-02-13 06:44:27 (9732): Disabling COM Port Support for VM.
2025-02-13 06:44:27 (9732): Disabling LPT Port Support for VM.
2025-02-13 06:44:28 (9732): Disabling Audio Support for VM.
2025-02-13 06:44:28 (9732): Disabling Clipboard Support for VM.
2025-02-13 06:44:28 (9732): Disabling Drag and Drop Support for VM.
2025-02-13 06:44:29 (9732): Adding storage controller(s) to VM.
2025-02-13 06:44:29 (9732): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-13 06:44:32 (9732): Adding VirtualBox Guest Additions to VM.
2025-02-13 06:44:33 (9732): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-13 06:44:33 (9732): forwarding host port 56367 to guest port 80
2025-02-13 06:44:33 (9732): Enabling remote desktop for VM.
2025-02-13 06:44:34 (9732): Required extension pack not installed, remote desktop not enabled.
2025-02-13 06:44:34 (9732): Enabling shared directory for VM.
2025-02-13 06:44:35 (9732): Starting VM using VBoxManage interface. (boinc_3439c855c3a83fc4, slot#3)
2025-02-13 06:45:07 (9732): Successfully started VM. (PID = '1812')
2025-02-13 06:45:07 (9732): Reporting VM Process ID to BOINC.
2025-02-13 06:45:07 (9732): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-13 06:45:07 (9732): Guest Log: CPUID EDX: 0x178bfbff
2025-02-13 06:45:07 (9732): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-13 06:45:07 (9732): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-13 06:45:07 (9732): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-13 06:45:07 (9732): Detected: Web Application Enabled (http://localhost:56367)
2025-02-13 06:45:08 (9732): Preference change detected
2025-02-13 06:45:08 (9732): Setting CPU throttle for VM. (100%)
2025-02-13 06:45:08 (9732): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-13 06:45:10 (9732): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-13 06:45:10 (9732): Guest Log: BIOS: Booting from Hard Disk...
2025-02-13 06:45:17 (9732): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-13 06:45:17 (9732): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-13 06:45:17 (9732): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-13 06:45:38 (9732): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-13 06:45:38 (9732): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-13 06:46:17 (9732): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-13 06:46:17 (9732): Guest Log: 00:00:00.004931 main     Log opened 2025-02-13T06:46:14.404179000Z
2025-02-13 06:46:17 (9732): Guest Log: 00:00:00.006760 main     OS Product: Linux
2025-02-13 06:46:17 (9732): Guest Log: 00:00:00.010108 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-13 06:46:17 (9732): Guest Log: 00:00:00.011029 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-13 06:46:17 (9732): Guest Log: 00:00:00.013087 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-13 06:46:17 (9732): Guest Log: 00:00:00.013115 main     Process ID: 1329
2025-02-13 06:46:17 (9732): Guest Log: 00:00:00.013119 main     Package type: LINUX_64BITS_GENERIC
2025-02-13 06:46:17 (9732): Guest Log: 00:00:00.019080 main     5.2.32 r132073 started. Verbose level = 0
2025-02-13 06:46:17 (9732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-13 06:46:17 (9732): Guest Log: [INFO] Mounting shared directory
2025-02-13 06:46:17 (9732): Guest Log: [INFO] Checking for init_data.xml
2025-02-13 06:46:27 (9732): Guest Log: 00:00:10.040853 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 997 245 000ns (GuestNow=1 739 425 586 434 331 000 ns GuestLast=1 739 429 174 431 576 000 ns fSetTimeLastLoop=true )
2025-02-13 06:46:31 (9732): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-13 06:46:31 (9732): Guest Log: [INFO] Detected branch: prod
2025-02-13 06:46:32 (9732): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-13 06:46:32 (9732): Guest Log: Copying input files
2025-02-13 06:46:40 (9732): Guest Log: Copied input files into RunAtlas.
2025-02-13 06:46:40 (9732): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-13 06:46:40 (9732): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-13 06:46:40 (9732): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-13 06:46:40 (9732): Guest Log: Further information can be found at the LHC@home message board.
2025-02-13 06:46:51 (9732): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-13 06:46:52 (9732): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-13 06:46:52 (9732): Guest Log: 2.6.3.0 1610 0 30196 142587 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-13 06:46:56 (9732): Guest Log: copied the webapp to /var/www
2025-02-13 06:46:56 (9732): Guest Log: ATHENA_PROC_NUMBER=4
2025-02-13 06:46:56 (9732): Guest Log: ATHENA_CORE_NUMBER=4
2025-02-13 06:47:00 (9732): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-13 06:47:00 (9732): Guest Log:  *** Starting ATLAS job. (PandaID=6508301397 taskID=43197887) ***
2025-02-13 08:29:50 (9732): Status Report: Elapsed Time: '6000.269190'
2025-02-13 08:29:50 (9732): Status Report: CPU Time: '13682.890625'
2025-02-13 10:18:51 (9732): Status Report: Elapsed Time: '12001.187181'
2025-02-13 10:18:58 (9732): Status Report: CPU Time: '39569.796875'
2025-02-13 12:10:31 (9732): Status Report: Elapsed Time: '18003.289749'
2025-02-13 12:10:31 (9732): Status Report: CPU Time: '66163.625000'
2025-02-13 14:02:11 (9732): Status Report: Elapsed Time: '24003.850168'
2025-02-13 14:02:11 (9732): Status Report: CPU Time: '92748.921875'
2025-02-13 14:36:37 (9732): Guest Log:  *** Job finished ***
2025-02-13 14:36:37 (9732): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:24,272 | INFO     | [data] copytool_out thread has finished
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:24,631 | INFO     | [job] queue monitor thread has finished
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:28,147 | INFO     | [data] queue_monitor thread has finished
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:28,424 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140688616654656)>', '<ExcThread(monitor, started 140687878117120)>']
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:29,072 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:29,083 | INFO     | [monitor] control thread has ended
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:33,465 | INFO     | all workflow threads have been joined
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:33,482 | INFO     | end of generic workflow (traces error code: 0)
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:33,493 | INFO     | traces error code: 0
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:33,495 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:33,927 [wrapper] ==== pilot stdout END ====
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:34,027 [wrapper] ==== wrapper stdout RESUME ====
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:34,047 [wrapper] pilotpid: 5996
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:34,061 [wrapper] Pilot exit status: 0
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:34,301 [wrapper] pandaids: 6508301397
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:34,379 [wrapper] cleanup supervisor_pilot  7701 5997
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:34,385 [wrapper] Test setup, not cleaning
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:34,424 [wrapper] apfmon messages muted
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:34,484 [wrapper] ==== wrapper stdout END ====
2025-02-13 14:36:37 (9732): Guest Log: 2025-02-13 13:36:34,551 [wrapper] ==== wrapper stderr END ====
2025-02-13 14:36:37 (9732): Guest Log:  *** Error codes and diagnostics ***
2025-02-13 14:36:37 (9732): Guest Log:     "exeErrorCode": 0,
2025-02-13 14:36:37 (9732): Guest Log:     "exeErrorDiag": "",
2025-02-13 14:36:37 (9732): Guest Log:     "pilotErrorCode": 0,
2025-02-13 14:36:37 (9732): Guest Log:     "pilotErrorDiag": "",
2025-02-13 14:36:37 (9732): Guest Log:  *** Listing of results directory ***
2025-02-13 14:36:37 (9732): Guest Log: total 309904
2025-02-13 14:36:37 (9732): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb  8 21:03 pilot3.tar.gz
2025-02-13 14:36:37 (9732): Guest Log: -rwx------. 1 atlas atlas     34924 Feb  8 21:08 runpilot2-wrapper.sh
2025-02-13 14:36:37 (9732): Guest Log: -rw-r--r--. 1 atlas atlas      5117 Feb  8 21:08 queuedata.json
2025-02-13 14:36:37 (9732): Guest Log: -rwxr-xr-x. 1 atlas atlas      9501 Feb 13 05:46 init_data.xml
2025-02-13 14:36:37 (9732): Guest Log: -rwxr-xr-x. 1 atlas atlas    503491 Feb 13 05:46 input.tar.gz
2025-02-13 14:36:37 (9732): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb 13 05:46 start_atlas.sh
2025-02-13 14:36:37 (9732): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb 13 05:46 EVNT.43092741._000449.pool.root.1 -> /data/./ATLAS.root_0
2025-02-13 14:36:37 (9732): Guest Log: -rw-r--r--. 1 atlas atlas      2528 Feb 13 05:46 pandaJob.out
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas       424 Feb 13 05:47 setup.sh.local
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas    986934 Feb 13 05:53 agis_schedconf.cvmfs.json
2025-02-13 14:36:37 (9732): Guest Log: drwx------. 4 atlas atlas      4096 Feb 13 05:54 pilot3
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas 306493592 Feb 13 13:34 HITS.43197887._011784.pool.root.1
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas      1031 Feb 13 13:35 memory_monitor_summary.json
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas   1591814 Feb 13 13:35 agis_ddmendpoints.agis.ALL.json
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas    474469 Feb 13 13:35 log.43197887._011784.job.log.tgz.1
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas        95 Feb 13 13:36 pilot_heartbeat.json
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas      7749 Feb 13 13:36 heartbeat.json
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas      4398 Feb 13 13:36 pilotlog.txt
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas   3075676 Feb 13 13:36 log.43197887._011784.job.log.1
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas       357 Feb 13 13:36 output.list
2025-02-13 14:36:37 (9732): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb 13 13:36 runtime_log
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas   3573760 Feb 13 13:36 result.tar.gz
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas       657 Feb 13 13:36 WwjLDmqE706nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmOaPKDmEqdNEo.diag
2025-02-13 14:36:37 (9732): Guest Log: -rw-r--r--. 1 atlas atlas     10936 Feb 13 13:36 runtime_log.err
2025-02-13 14:36:37 (9732): Guest Log: Looking for outputfile HITS.43197887._011784.pool.root.1
2025-02-13 14:36:37 (9732): Guest Log: HITS file was successfully produced
2025-02-13 14:36:37 (9732): Guest Log: -rw-------. 1 atlas atlas 306493592 Feb 13 13:34 /home/atlas/RunAtlas/HITS.43197887._011784.pool.root.1
2025-02-13 14:36:43 (9732): Guest Log: Successfully finished the ATLAS job!
2025-02-13 14:36:43 (9732): Guest Log: Copying the results back to the shared directory!
2025-02-13 14:36:43 (9732): Guest Log:  *** Contents of shared directory: ***
2025-02-13 14:36:44 (9732): Guest Log: total 631776
2025-02-13 14:36:44 (9732): Guest Log: -rwxrwxrwx. 1 root root 336326755 Feb 13 05:44 ATLAS.root_0
2025-02-13 14:36:44 (9732): Guest Log: -rwxrwxrwx. 1 root root 306493592 Feb 13 13:36 HITS.pool.root.1
2025-02-13 14:36:44 (9732): Guest Log: -rwxrwxrwx. 1 root root      9501 Feb 13 05:44 init_data.xml
2025-02-13 14:36:44 (9732): Guest Log: -rwxrwxrwx. 1 root root    503491 Feb  8 23:39 input.tar.gz
2025-02-13 14:36:44 (9732): Guest Log: -rwxrwxrwx. 1 root root   3573760 Feb 13 13:36 result.tar.gz
2025-02-13 14:36:44 (9732): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb  8 23:39 start_atlas.sh
2025-02-13 14:36:44 (9732): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-13 14:36:44 (9732): VM Completion File Detected.
2025-02-13 14:36:44 (9732): Powering off VM.
2025-02-13 14:36:49 (9732): Successfully stopped VM.
2025-02-13 14:36:49 (9732): Deregistering VM. (boinc_3439c855c3a83fc4, slot#3)
2025-02-13 14:36:49 (9732): Removing network bandwidth throttle group from VM.
2025-02-13 14:36:49 (9732): Removing VM from VirtualBox.
14:36:56 (9732): called boinc_finish(0)

</stderr_txt>
]]>

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