Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-08 13:43:19 (5317): Detected: vboxwrapper 26206
2025-02-08 13:43:19 (5317): Detected: BOINC client v8.1.0
2025-02-08 13:43:19 (5317): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-02-08 13:43:19 (5317): Successfully copied 'init_data.xml' to the shared directory.
2025-02-08 13:43:19 (5317): Create VM. (boinc_8d33bddfffa8047d, slot#7)
2025-02-08 13:43:19 (5317): Setting Memory Size for VM. (4200MB)
2025-02-08 13:43:20 (5317): Setting CPU Count for VM. (2)
2025-02-08 13:43:20 (5317): Setting Chipset Options for VM.
2025-02-08 13:43:20 (5317): Setting Graphics Controller Options for VM.
2025-02-08 13:43:20 (5317): Setting Boot Options for VM.
2025-02-08 13:43:20 (5317): Setting Network Configuration for NAT.
2025-02-08 13:43:20 (5317): Enabling VM Network Access.
2025-02-08 13:43:20 (5317): Disabling USB Support for VM.
2025-02-08 13:43:21 (5317): Disabling COM Port Support for VM.
2025-02-08 13:43:21 (5317): Disabling LPT Port Support for VM.
2025-02-08 13:43:21 (5317): Disabling Audio Support for VM.
2025-02-08 13:43:21 (5317): Disabling Clipboard Support for VM.
2025-02-08 13:43:21 (5317): Disabling Drag and Drop Support for VM.
2025-02-08 13:43:21 (5317): Adding storage controller(s) to VM.
2025-02-08 13:43:21 (5317): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-08 13:43:23 (5317): Adding VirtualBox Guest Additions to VM.
2025-02-08 13:43:24 (5317): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-08 13:43:24 (5317): forwarding host port 46837 to guest port 80
2025-02-08 13:43:24 (5317): Enabling remote desktop for VM.
2025-02-08 13:43:24 (5317): Required extension pack not installed, remote desktop not enabled.
2025-02-08 13:43:24 (5317): Enabling shared directory for VM.
2025-02-08 13:43:24 (5317): Starting VM using VBoxManage interface. (boinc_8d33bddfffa8047d, slot#7)
2025-02-08 13:43:26 (5317): Successfully started VM. (PID = '5853')
2025-02-08 13:43:26 (5317): Reporting VM Process ID to BOINC.
2025-02-08 13:43:26 (5317): Guest Log: BIOS: VirtualBox 7.1.4
2025-02-08 13:43:26 (5317): Guest Log: CPUID EDX: 0x178bfbff
2025-02-08 13:43:26 (5317): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-08 13:43:26 (5317): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-08 13:43:26 (5317): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-08 13:43:26 (5317): Detected: Web Application Enabled (http://localhost:46837)
2025-02-08 13:43:26 (5317): Preference change detected
2025-02-08 13:43:26 (5317): Setting CPU throttle for VM. (100%)
2025-02-08 13:43:26 (5317): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-08 13:43:28 (5317): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-08 13:43:28 (5317): Guest Log: BIOS: Booting from Hard Disk...
2025-02-08 13:43:31 (5317): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-08 13:43:31 (5317): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-08 13:43:31 (5317): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-08 13:43:40 (5317): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-08 13:43:40 (5317): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-08 13:44:06 (5317): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-08 13:44:06 (5317): Guest Log: 00:00:00.000555 main     Log opened 2025-02-08T18:44:05.714895000Z
2025-02-08 13:44:06 (5317): Guest Log: 00:00:00.000681 main     OS Product: Linux
2025-02-08 13:44:06 (5317): Guest Log: 00:00:00.000718 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-08 13:44:06 (5317): Guest Log: 00:00:00.000738 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-08 13:44:06 (5317): Guest Log: 00:00:00.000772 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-08 13:44:06 (5317): Guest Log: 00:00:00.000773 main     Process ID: 1288
2025-02-08 13:44:06 (5317): Guest Log: 00:00:00.000773 main     Package type: LINUX_64BITS_GENERIC
2025-02-08 13:44:06 (5317): Guest Log: 00:00:00.001298 main     5.2.32 r132073 started. Verbose level = 0
2025-02-08 13:44:07 (5317): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-08 13:44:07 (5317): Guest Log: [INFO] Mounting shared directory
2025-02-08 13:44:08 (5317): Guest Log: [INFO] Checking for init_data.xml
2025-02-08 13:44:23 (5317): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-08 13:44:23 (5317): Guest Log: [INFO] Detected branch: prod
2025-02-08 13:44:23 (5317): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-08 13:44:23 (5317): Guest Log: Copying input files
2025-02-08 13:44:24 (5317): Guest Log: Copied input files into RunAtlas.
2025-02-08 13:44:24 (5317): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-08 13:44:24 (5317): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-08 13:44:24 (5317): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-08 13:44:24 (5317): Guest Log: Further information can be found at the LHC@home message board.
2025-02-08 13:44:59 (5317): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-08 13:44:59 (5317): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-08 13:44:59 (5317): Guest Log: 2.6.3.0 1567 0 30140 142421 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-08 13:45:06 (5317): Guest Log: copied the webapp to /var/www
2025-02-08 13:45:06 (5317): Guest Log: ATHENA_PROC_NUMBER=2
2025-02-08 13:45:06 (5317): Guest Log: ATHENA_CORE_NUMBER=2
2025-02-08 13:45:07 (5317): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-08 13:45:07 (5317): Guest Log:  *** Starting ATLAS job. (PandaID=6508228895 taskID=43205075) ***
2025-02-08 15:22:27 (5317): Status Report: Elapsed Time: '6000.000000'
2025-02-08 15:22:27 (5317): Status Report: CPU Time: '9805.770000'
2025-02-08 17:01:28 (5317): Status Report: Elapsed Time: '12000.000000'
2025-02-08 17:01:28 (5317): Status Report: CPU Time: '21659.430000'
2025-02-08 18:40:29 (5317): Status Report: Elapsed Time: '18000.000000'
2025-02-08 18:40:29 (5317): Status Report: CPU Time: '33515.420000'
2025-02-08 20:19:30 (5317): Status Report: Elapsed Time: '24000.000000'
2025-02-08 20:19:30 (5317): Status Report: CPU Time: '45375.640000'
2025-02-08 21:58:30 (5317): Status Report: Elapsed Time: '30000.000000'
2025-02-08 21:58:30 (5317): Status Report: CPU Time: '57235.280000'
2025-02-08 22:24:21 (5317): Guest Log:  *** Job finished ***
2025-02-08 22:24:21 (5317): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:10,362 | INFO     | [job] validate thread has finished
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:10,532 | INFO     | [payload] validate_post thread has finished
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:12,158 | INFO     | [data] queue_monitor thread has finished
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:13,755 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139913180272448)>', '<ExcThread(monitor, started 139912292583168)>']
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:14,178 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:14,178 | INFO     | [monitor] control thread has ended
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:18,760 | INFO     | all workflow threads have been joined
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:18,761 | INFO     | end of generic workflow (traces error code: 0)
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:18,761 | INFO     | traces error code: 0
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:18,761 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:18,925 [wrapper] ==== pilot stdout END ====
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:18,930 [wrapper] ==== wrapper stdout RESUME ====
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:18,934 [wrapper] pilotpid: 5908
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:18,938 [wrapper] Pilot exit status: 0
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:19,037 [wrapper] pandaids: 6508228895
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:19,091 [wrapper] cleanup supervisor_pilot 11336 5909
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:19,095 [wrapper] Test setup, not cleaning
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:19,104 [wrapper] apfmon messages muted
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:19,109 [wrapper] ==== wrapper stdout END ====
2025-02-08 22:24:21 (5317): Guest Log: 2025-02-09 03:24:19,113 [wrapper] ==== wrapper stderr END ====
2025-02-08 22:24:21 (5317): Guest Log:  *** Error codes and diagnostics ***
2025-02-08 22:24:21 (5317): Guest Log:     "exeErrorCode": 0,
2025-02-08 22:24:21 (5317): Guest Log:     "exeErrorDiag": "",
2025-02-08 22:24:21 (5317): Guest Log:     "pilotErrorCode": 0,
2025-02-08 22:24:21 (5317): Guest Log:     "pilotErrorDiag": "",
2025-02-08 22:24:21 (5317): Guest Log:  *** Listing of results directory ***
2025-02-08 22:24:21 (5317): Guest Log: total 323108
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb  8 16:31 pilot3.tar.gz
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 atlas atlas      5117 Feb  8 16:35 queuedata.json
2025-02-08 22:24:21 (5317): Guest Log: -rwx------. 1 atlas atlas     34924 Feb  8 16:36 runpilot2-wrapper.sh
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 atlas atlas      9079 Feb  8 18:44 init_data.xml
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 atlas atlas    503487 Feb  8 18:44 input.tar.gz
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Feb  8 18:44 start_atlas.sh
2025-02-08 22:24:21 (5317): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb  8 18:44 EVNT.43092757._000125.pool.root.1 -> /data/./ATLAS.root_0
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 atlas atlas      2553 Feb  8 18:45 pandaJob.out
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas       424 Feb  8 18:45 setup.sh.local
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas    982233 Feb  8 18:46 agis_schedconf.cvmfs.json
2025-02-08 22:24:21 (5317): Guest Log: drwx------. 4 atlas atlas      4096 Feb  8 18:46 pilot3
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas 319357552 Feb  9 03:22 HITS.43205075._003122.pool.root.1
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas      1033 Feb  9 03:23 memory_monitor_summary.json
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas   1587792 Feb  9 03:23 agis_ddmendpoints.agis.ALL.json
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas    484507 Feb  9 03:23 log.43205075._003122.job.log.tgz.1
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas        95 Feb  9 03:23 pilot_heartbeat.json
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas      7713 Feb  9 03:24 heartbeat.json
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas      4584 Feb  9 03:24 pilotlog.txt
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas   3399796 Feb  9 03:24 log.43205075._003122.job.log.1
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas       357 Feb  9 03:24 output.list
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb  9 03:24 runtime_log
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas   3901440 Feb  9 03:24 result.tar.gz
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas       658 Feb  9 03:24 vlyNDmTz206n9Rq4apOajLDm4fhM0noT9bVoFjIUDmAXLKDmeJvYvn.diag
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 atlas atlas     10926 Feb  9 03:24 runtime_log.err
2025-02-08 22:24:21 (5317): Guest Log: Looking for outputfile HITS.43205075._003122.pool.root.1
2025-02-08 22:24:21 (5317): Guest Log: HITS file was successfully produced
2025-02-08 22:24:21 (5317): Guest Log: -rw-------. 1 atlas atlas 319357552 Feb  9 03:22 /home/atlas/RunAtlas/HITS.43205075._003122.pool.root.1
2025-02-08 22:24:21 (5317): Guest Log: Successfully finished the ATLAS job!
2025-02-08 22:24:21 (5317): Guest Log: Copying the results back to the shared directory!
2025-02-08 22:24:21 (5317): Guest Log:  *** Contents of shared directory: ***
2025-02-08 22:24:21 (5317): Guest Log: total 340360
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 root root 344083290 Feb  8 18:43 ATLAS.root_0
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 root root      9079 Feb  8 18:43 init_data.xml
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 root root    503487 Feb  8 18:43 input.tar.gz
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 root root   3901440 Feb  9 03:24 result.tar.gz
2025-02-08 22:24:21 (5317): Guest Log: -rw-r--r--. 1 root root     17569 Feb  8 18:43 start_atlas.sh
2025-02-08 22:24:21 (5317): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-08 22:24:22 (5317): VM Completion File Detected.
2025-02-08 22:24:22 (5317): Powering off VM.
2025-02-08 22:24:22 (5317): Successfully stopped VM.
2025-02-08 22:24:22 (5317): Deregistering VM. (boinc_8d33bddfffa8047d, slot#7)
2025-02-08 22:24:23 (5317): Removing network bandwidth throttle group from VM.
2025-02-08 22:24:23 (5317): Removing VM from VirtualBox.
22:24:28 (5317): called boinc_finish(0)

</stderr_txt>
]]>

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