Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-09 06:24:53 (12212): Detected: vboxwrapper 26206
2025-02-09 06:24:53 (12212): Detected: BOINC client v8.0.2
2025-02-09 06:24:54 (12212): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-09 06:24:54 (12212): Successfully copied 'init_data.xml' to the shared directory.
2025-02-09 06:24:55 (12212): Create VM. (boinc_14f54877b888a64d, slot#6)
2025-02-09 06:24:55 (12212): Setting Memory Size for VM. (4800MB)
2025-02-09 06:24:56 (12212): Setting CPU Count for VM. (8)
2025-02-09 06:24:56 (12212): Setting Chipset Options for VM.
2025-02-09 06:24:56 (12212): Setting Graphics Controller Options for VM.
2025-02-09 06:24:56 (12212): Setting Boot Options for VM.
2025-02-09 06:24:57 (12212): Setting Network Configuration for NAT.
2025-02-09 06:24:57 (12212): Enabling VM Network Access.
2025-02-09 06:24:57 (12212): Disabling USB Support for VM.
2025-02-09 06:24:57 (12212): Disabling COM Port Support for VM.
2025-02-09 06:24:58 (12212): Disabling LPT Port Support for VM.
2025-02-09 06:24:58 (12212): Disabling Audio Support for VM.
2025-02-09 06:24:58 (12212): Disabling Clipboard Support for VM.
2025-02-09 06:24:59 (12212): Disabling Drag and Drop Support for VM.
2025-02-09 06:24:59 (12212): Adding storage controller(s) to VM.
2025-02-09 06:24:59 (12212): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-09 06:25:00 (12212): Adding VirtualBox Guest Additions to VM.
2025-02-09 06:25:00 (12212): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-09 06:25:00 (12212): forwarding host port 52332 to guest port 80
2025-02-09 06:25:01 (12212): Enabling remote desktop for VM.
2025-02-09 06:25:01 (12212): Required extension pack not installed, remote desktop not enabled.
2025-02-09 06:25:01 (12212): Enabling shared directory for VM.
2025-02-09 06:25:01 (12212): Starting VM using VBoxManage interface. (boinc_14f54877b888a64d, slot#6)
2025-02-09 06:25:06 (12212): Successfully started VM. (PID = '3564')
2025-02-09 06:25:06 (12212): Reporting VM Process ID to BOINC.
2025-02-09 06:25:06 (12212): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-09 06:25:06 (12212): Guest Log: CPUID EDX: 0x178bfbff
2025-02-09 06:25:06 (12212): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-09 06:25:06 (12212): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-09 06:25:06 (12212): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-09 06:25:06 (12212): Detected: Web Application Enabled (http://localhost:52332)
2025-02-09 06:25:06 (12212): Preference change detected
2025-02-09 06:25:06 (12212): Setting CPU throttle for VM. (50%)
2025-02-09 06:25:06 (12212): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-09 06:25:08 (12212): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-09 06:25:08 (12212): Guest Log: BIOS: Booting from Hard Disk...
2025-02-09 06:25:11 (12212): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-09 06:25:11 (12212): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-09 06:25:11 (12212): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-09 06:25:18 (12212): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-09 06:25:18 (12212): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-09 06:25:22 (12212): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-09 06:25:22 (12212): Guest Log: 00:00:00.000118 main     Log opened 2025-02-09T06:25:21.288574000Z
2025-02-09 06:25:22 (12212): Guest Log: 00:00:00.000232 main     OS Product: Linux
2025-02-09 06:25:22 (12212): Guest Log: 00:00:00.000270 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-09 06:25:22 (12212): Guest Log: 00:00:00.000302 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-09 06:25:22 (12212): Guest Log: 00:00:00.000334 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-09 06:25:22 (12212): Guest Log: 00:00:00.000334 main     Process ID: 1363
2025-02-09 06:25:22 (12212): Guest Log: 00:00:00.000335 main     Package type: LINUX_64BITS_GENERIC
2025-02-09 06:25:22 (12212): Guest Log: 00:00:00.000962 main     5.2.32 r132073 started. Verbose level = 0
2025-02-09 06:25:23 (12212): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-09 06:25:23 (12212): Guest Log: [INFO] Mounting shared directory
2025-02-09 06:25:23 (12212): Guest Log: [INFO] Checking for init_data.xml
2025-02-09 06:25:30 (12212): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-09 06:25:30 (12212): Guest Log: [INFO] Detected branch: prod
2025-02-09 06:25:31 (12212): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-09 06:25:31 (12212): Guest Log: Copying input files
2025-02-09 06:25:32 (12212): Guest Log: Copied input files into RunAtlas.
2025-02-09 06:25:32 (12212): Guest Log: 00:00:10.046495 timesync vgsvcTimeSyncWorker: Radical guest time change: 25 211 025 984 000ns (GuestNow=1 739 107 532 316 949 000 ns GuestLast=1 739 082 321 290 965 000 ns fSetTimeLastLoop=true )
2025-02-09 06:25:33 (12212): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-09 06:25:33 (12212): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-09 06:25:33 (12212): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-09 06:25:33 (12212): Guest Log: Further information can be found at the LHC@home message board.
2025-02-09 06:25:43 (12212): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-09 06:25:43 (12212): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-09 06:25:43 (12212): Guest Log: 2.6.3.0 1647 0 32208 142449 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-09 06:25:44 (12212): Guest Log: copied the webapp to /var/www
2025-02-09 06:25:44 (12212): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-09 06:25:44 (12212): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-09 06:25:45 (12212): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-09 06:25:45 (12212): Guest Log:  *** Starting ATLAS job. (PandaID=6508204024 taskID=43205094) ***
2025-02-09 08:05:11 (12212): Status Report: Elapsed Time: '6000.946573'
2025-02-09 08:05:11 (12212): Status Report: CPU Time: '11388.921875'
2025-02-09 09:45:15 (12212): Status Report: Elapsed Time: '12001.321814'
2025-02-09 09:45:15 (12212): Status Report: CPU Time: '27298.250000'
2025-02-09 11:26:21 (12212): Status Report: Elapsed Time: '18002.186932'
2025-02-09 11:26:21 (12212): Status Report: CPU Time: '43798.875000'
2025-02-09 13:06:26 (12212): Status Report: Elapsed Time: '24002.186932'
2025-02-09 13:06:26 (12212): Status Report: CPU Time: '63896.406250'
2025-02-09 13:38:26 (12212): Guest Log:  *** Job finished ***
2025-02-09 13:38:26 (12212): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:10,850 | INFO     | [data] queue_monitor thread has finished
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:17,258 | INFO     | job.realtimelogging is not enabled
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:18,260 | INFO     | [payload] run_realtimelog thread has finished
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:19,531 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140575495530304)>', '<ExcThread(monitor, started 140574606747392)>']
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:19,895 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:19,895 | INFO     | [monitor] control thread has ended
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,537 | INFO     | all workflow threads have been joined
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,537 | INFO     | end of generic workflow (traces error code: 0)
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,537 | INFO     | traces error code: 0
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,537 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,632 [wrapper] ==== pilot stdout END ====
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,638 [wrapper] ==== wrapper stdout RESUME ====
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,676 [wrapper] pilotpid: 6044
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,684 [wrapper] Pilot exit status: 0
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,843 [wrapper] pandaids: 6508204024
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,917 [wrapper] cleanup supervisor_pilot 24445 6045
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,926 [wrapper] Test setup, not cleaning
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,944 [wrapper] apfmon messages muted
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,971 [wrapper] ==== wrapper stdout END ====
2025-02-09 13:38:26 (12212): Guest Log: 2025-02-09 20:38:24,977 [wrapper] ==== wrapper stderr END ====
2025-02-09 13:38:26 (12212): Guest Log:  *** Error codes and diagnostics ***
2025-02-09 13:38:26 (12212): Guest Log:     "exeErrorCode": 0,
2025-02-09 13:38:26 (12212): Guest Log:     "exeErrorDiag": "",
2025-02-09 13:38:26 (12212): Guest Log:     "pilotErrorCode": 0,
2025-02-09 13:38:26 (12212): Guest Log:     "pilotErrorDiag": "",
2025-02-09 13:38:26 (12212): Guest Log:  *** Listing of results directory ***
2025-02-09 13:38:26 (12212): Guest Log: total 324896
2025-02-09 13:38:26 (12212): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Feb  8 13:52 pilot3.tar.gz
2025-02-09 13:38:26 (12212): Guest Log: -rwx------. 1 atlas atlas     34924 Feb  8 13:58 runpilot2-wrapper.sh
2025-02-09 13:38:26 (12212): Guest Log: -rw-r--r--. 1 atlas atlas      5117 Feb  8 13:58 queuedata.json
2025-02-09 13:38:26 (12212): Guest Log: -rwxr-xr-x. 1 atlas atlas     12260 Feb  9 13:25 init_data.xml
2025-02-09 13:38:26 (12212): Guest Log: -rwxr-xr-x. 1 atlas atlas    503491 Feb  9 13:25 input.tar.gz
2025-02-09 13:38:26 (12212): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb  9 13:25 start_atlas.sh
2025-02-09 13:38:26 (12212): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb  9 13:25 EVNT.43092757._001238.pool.root.1 -> /data/./ATLAS.root_0
2025-02-09 13:38:26 (12212): Guest Log: -rw-r--r--. 1 atlas atlas      2546 Feb  9 13:25 pandaJob.out
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas       424 Feb  9 13:25 setup.sh.local
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas    983533 Feb  9 13:27 agis_schedconf.cvmfs.json
2025-02-09 13:38:26 (12212): Guest Log: drwx------. 4 atlas atlas      4096 Feb  9 13:27 pilot3
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas 324807439 Feb  9 20:36 HITS.43205094._000950.pool.root.1
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas        95 Feb  9 20:37 pilot_heartbeat.json
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas      1031 Feb  9 20:37 memory_monitor_summary.json
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas   1587792 Feb  9 20:37 agis_ddmendpoints.agis.ALL.json
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas    452041 Feb  9 20:37 log.43205094._000950.job.log.tgz.1
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas      7745 Feb  9 20:38 heartbeat.json
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas      4656 Feb  9 20:38 pilotlog.txt
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas   1622604 Feb  9 20:38 log.43205094._000950.job.log.1
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas       357 Feb  9 20:38 output.list
2025-02-09 13:38:26 (12212): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb  9 20:38 runtime_log
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas   2088960 Feb  9 20:38 result.tar.gz
2025-02-09 13:38:26 (12212): Guest Log: -rw-r--r--. 1 atlas atlas     10966 Feb  9 20:38 runtime_log.err
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas       669 Feb  9 20:38 pQ9MDmCX006n9Rq4apOajLDm4fhM0noT9bVoFjIUDmDKLKDmRop7Gm.diag
2025-02-09 13:38:26 (12212): Guest Log: Looking for outputfile HITS.43205094._000950.pool.root.1
2025-02-09 13:38:26 (12212): Guest Log: HITS file was successfully produced
2025-02-09 13:38:26 (12212): Guest Log: -rw-------. 1 atlas atlas 324807439 Feb  9 20:36 /home/atlas/RunAtlas/HITS.43205094._000950.pool.root.1
2025-02-09 13:38:28 (12212): Guest Log: Successfully finished the ATLAS job!
2025-02-09 13:38:28 (12212): Guest Log: Copying the results back to the shared directory!
2025-02-09 13:38:29 (12212): Guest Log:  *** Contents of shared directory: ***
2025-02-09 13:38:29 (12212): Guest Log: total 653448
2025-02-09 13:38:29 (12212): Guest Log: -rwxrwxrwx. 1 root root 341694713 Feb  9 13:24 ATLAS.root_0
2025-02-09 13:38:29 (12212): Guest Log: -rwxrwxrwx. 1 root root 324807439 Feb  9 20:38 HITS.pool.root.1
2025-02-09 13:38:29 (12212): Guest Log: -rwxrwxrwx. 1 root root     12260 Feb  9 13:24 init_data.xml
2025-02-09 13:38:29 (12212): Guest Log: -rwxrwxrwx. 1 root root    503491 Feb  8 15:48 input.tar.gz
2025-02-09 13:38:29 (12212): Guest Log: -rwxrwxrwx. 1 root root   2088960 Feb  9 20:38 result.tar.gz
2025-02-09 13:38:29 (12212): Guest Log: -rwxrwxrwx. 1 root root     17569 Feb  8 15:48 start_atlas.sh
2025-02-09 13:38:29 (12212): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-09 13:38:29 (12212): VM Completion File Detected.
2025-02-09 13:38:29 (12212): Powering off VM.
2025-02-09 13:38:30 (12212): Successfully stopped VM.
2025-02-09 13:38:30 (12212): Deregistering VM. (boinc_14f54877b888a64d, slot#6)
2025-02-09 13:38:30 (12212): Removing network bandwidth throttle group from VM.
2025-02-09 13:38:31 (12212): Removing VM from VirtualBox.
13:38:36 (12212): called boinc_finish(0)

</stderr_txt>
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