Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-02-01 23:35:24 (5564): Detected: vboxwrapper 26206
2025-02-01 23:35:24 (5564): Detected: BOINC client v8.0.2
2025-02-01 23:35:25 (5564): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-02-01 23:35:26 (5564): Successfully copied 'init_data.xml' to the shared directory.
2025-02-01 23:35:26 (5564): Create VM. (boinc_60966ebfde4312aa, slot#6)
2025-02-01 23:35:27 (5564): Setting Memory Size for VM. (4800MB)
2025-02-01 23:35:28 (5564): Setting CPU Count for VM. (8)
2025-02-01 23:35:28 (5564): Setting Chipset Options for VM.
2025-02-01 23:35:29 (5564): Setting Graphics Controller Options for VM.
2025-02-01 23:35:29 (5564): Setting Boot Options for VM.
2025-02-01 23:35:30 (5564): Setting Network Configuration for NAT.
2025-02-01 23:35:30 (5564): Enabling VM Network Access.
2025-02-01 23:35:30 (5564): Disabling USB Support for VM.
2025-02-01 23:35:31 (5564): Disabling COM Port Support for VM.
2025-02-01 23:35:31 (5564): Disabling LPT Port Support for VM.
2025-02-01 23:35:32 (5564): Disabling Audio Support for VM.
2025-02-01 23:35:32 (5564): Disabling Clipboard Support for VM.
2025-02-01 23:35:32 (5564): Disabling Drag and Drop Support for VM.
2025-02-01 23:35:32 (5564): Adding storage controller(s) to VM.
2025-02-01 23:35:33 (5564): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-02-01 23:35:38 (5564): Adding VirtualBox Guest Additions to VM.
2025-02-01 23:35:40 (5564): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-02-01 23:35:40 (5564): forwarding host port 63485 to guest port 80
2025-02-01 23:35:41 (5564): Enabling remote desktop for VM.
2025-02-01 23:35:42 (5564): Required extension pack not installed, remote desktop not enabled.
2025-02-01 23:35:42 (5564): Enabling shared directory for VM.
2025-02-01 23:35:43 (5564): Starting VM using VBoxManage interface. (boinc_60966ebfde4312aa, slot#6)
2025-02-01 23:35:50 (5564): Successfully started VM. (PID = '5116')
2025-02-01 23:35:50 (5564): Reporting VM Process ID to BOINC.
2025-02-01 23:35:50 (5564): Guest Log: BIOS: VirtualBox 7.0.6
2025-02-01 23:35:50 (5564): Guest Log: CPUID EDX: 0x178bfbff
2025-02-01 23:35:50 (5564): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-02-01 23:35:50 (5564): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-02-01 23:35:50 (5564): VM state change detected. (old = 'poweredoff', new = 'running')
2025-02-01 23:35:50 (5564): Detected: Web Application Enabled (http://localhost:63485)
2025-02-01 23:35:50 (5564): Preference change detected
2025-02-01 23:35:50 (5564): Setting CPU throttle for VM. (100%)
2025-02-01 23:35:51 (5564): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-02-01 23:35:52 (5564): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-02-01 23:35:52 (5564): Guest Log: BIOS: Booting from Hard Disk...
2025-02-01 23:35:54 (5564): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-02-01 23:35:54 (5564): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-02-01 23:35:54 (5564): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-02-01 23:36:08 (5564): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-02-01 23:36:08 (5564): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-02-01 23:36:21 (5564): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-02-01 23:36:21 (5564): Guest Log: 00:00:00.000227 main     Log opened 2025-02-01T23:36:19.209117000Z
2025-02-01 23:36:21 (5564): Guest Log: 00:00:00.000361 main     OS Product: Linux
2025-02-01 23:36:21 (5564): Guest Log: 00:00:00.000401 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-02-01 23:36:21 (5564): Guest Log: 00:00:00.000437 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-02-01 23:36:21 (5564): Guest Log: 00:00:00.000474 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-02-01 23:36:21 (5564): Guest Log: 00:00:00.000475 main     Process ID: 1370
2025-02-01 23:36:21 (5564): Guest Log: 00:00:00.000476 main     Package type: LINUX_64BITS_GENERIC
2025-02-01 23:36:21 (5564): Guest Log: 00:00:00.026458 main     5.2.32 r132073 started. Verbose level = 0
2025-02-01 23:36:21 (5564): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-02-01 23:36:21 (5564): Guest Log: [INFO] Mounting shared directory
2025-02-01 23:36:21 (5564): Guest Log: [INFO] Checking for init_data.xml
2025-02-01 23:36:31 (5564): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-02-01 23:36:31 (5564): Guest Log: [INFO] Detected branch: prod
2025-02-01 23:36:31 (5564): Guest Log: 00:00:10.059444 timesync vgsvcTimeSyncWorker: Radical guest time change: 28 811 448 570 000ns (GuestNow=1 738 481 790 703 929 000 ns GuestLast=1 738 452 979 255 359 000 ns fSetTimeLastLoop=true )
2025-02-01 23:36:31 (5564): Guest Log: This is the prod version of the ATLAS job wrapper
2025-02-01 23:36:31 (5564): Guest Log: Copying input files
2025-02-01 23:36:35 (5564): Guest Log: Copied input files into RunAtlas.
2025-02-01 23:36:35 (5564): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-02-01 23:36:35 (5564): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-02-01 23:36:35 (5564): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-02-01 23:36:35 (5564): Guest Log: Further information can be found at the LHC@home message board.
2025-02-01 23:36:44 (5564): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-02-01 23:36:44 (5564): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-02-01 23:36:44 (5564): Guest Log: 2.6.3.0 1651 0 32044 142199 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-02-01 23:36:48 (5564): Guest Log: copied the webapp to /var/www
2025-02-01 23:36:48 (5564): Guest Log: ATHENA_PROC_NUMBER=8
2025-02-01 23:36:48 (5564): Guest Log: ATHENA_CORE_NUMBER=8
2025-02-01 23:36:48 (5564): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-02-01 23:36:48 (5564): Guest Log:  *** Starting ATLAS job. (PandaID=6494624658 taskID=43078919) ***
2025-02-02 01:29:08 (5564): Status Report: Elapsed Time: '6002.161041'
2025-02-02 01:29:08 (5564): Status Report: CPU Time: '41385.645691'
2025-02-02 03:26:29 (5564): Status Report: Elapsed Time: '12002.263935'
2025-02-02 03:26:29 (5564): Status Report: CPU Time: '96453.437087'
2025-02-02 05:26:23 (5564): Status Report: Elapsed Time: '18003.639603'
2025-02-02 05:26:24 (5564): Status Report: CPU Time: '152696.040814'
2025-02-02 06:02:07 (5564): Guest Log:  *** Job finished ***
2025-02-02 06:02:07 (5564): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:01:56,403 | INFO     | [payload] control thread has finished
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:01:57,102 | INFO     | [data] copytool_out thread has finished
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:01:58,522 | INFO     | [data] queue_monitor thread has finished
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:01:58,698 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140539058788160)>', '<ExcThread(monitor, started 140538619610880)>']
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:01:59,095 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:01:59,096 | INFO     | [monitor] control thread has ended
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:03,703 | INFO     | all workflow threads have been joined
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:03,703 | INFO     | end of generic workflow (traces error code: 0)
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:03,704 | INFO     | traces error code: 0
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:03,704 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:03,879 [wrapper] ==== pilot stdout END ====
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:03,885 [wrapper] ==== wrapper stdout RESUME ====
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:03,891 [wrapper] pilotpid: 6041
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:03,897 [wrapper] Pilot exit status: 0
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:03,999 [wrapper] pandaids: 6494624658
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:04,043 [wrapper] cleanup supervisor_pilot 28862 6042
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:04,050 [wrapper] Test setup, not cleaning
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:04,063 [wrapper] apfmon messages muted
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:04,069 [wrapper] ==== wrapper stdout END ====
2025-02-02 06:02:07 (5564): Guest Log: 2025-02-02 14:02:04,076 [wrapper] ==== wrapper stderr END ====
2025-02-02 06:02:07 (5564): Guest Log:  *** Error codes and diagnostics ***
2025-02-02 06:02:07 (5564): Guest Log:     "exeErrorCode": 0,
2025-02-02 06:02:07 (5564): Guest Log:     "exeErrorDiag": "",
2025-02-02 06:02:07 (5564): Guest Log:     "pilotErrorCode": 0,
2025-02-02 06:02:07 (5564): Guest Log:     "pilotErrorDiag": "",
2025-02-02 06:02:07 (5564): Guest Log:  *** Listing of results directory ***
2025-02-02 06:02:07 (5564): Guest Log: total 326844
2025-02-02 06:02:07 (5564): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Jan 30 06:49 pilot3.tar.gz
2025-02-02 06:02:07 (5564): Guest Log: -rw-r--r--. 1 atlas atlas      5117 Jan 30 07:05 queuedata.json
2025-02-02 06:02:07 (5564): Guest Log: -rwx------. 1 atlas atlas     34924 Jan 30 07:06 runpilot2-wrapper.sh
2025-02-02 06:02:07 (5564): Guest Log: -rwxr-xr-x. 1 atlas atlas      8923 Feb  2 07:36 init_data.xml
2025-02-02 06:02:07 (5564): Guest Log: -rwxr-xr-x. 1 atlas atlas    503494 Feb  2 07:36 input.tar.gz
2025-02-02 06:02:07 (5564): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Feb  2 07:36 start_atlas.sh
2025-02-02 06:02:07 (5564): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb  2 07:36 EVNT.43078917._000458.pool.root.1 -> /data/./ATLAS.root_0
2025-02-02 06:02:07 (5564): Guest Log: -rw-r--r--. 1 atlas atlas      2546 Feb  2 07:36 pandaJob.out
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas       424 Feb  2 07:36 setup.sh.local
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas    969274 Feb  2 07:38 agis_schedconf.cvmfs.json
2025-02-02 06:02:07 (5564): Guest Log: drwx------. 4 atlas atlas      4096 Feb  2 07:38 pilot3
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas 326072928 Feb  2 14:00 HITS.43078919._010538.pool.root.1
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas      1034 Feb  2 14:01 memory_monitor_summary.json
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas   1580185 Feb  2 14:01 agis_ddmendpoints.agis.ALL.json
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas    452202 Feb  2 14:01 log.43078919._010538.job.log.tgz.1
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas        95 Feb  2 14:01 pilot_heartbeat.json
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas      7749 Feb  2 14:01 heartbeat.json
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas      4461 Feb  2 14:02 pilotlog.txt
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas   1996760 Feb  2 14:02 log.43078919._010538.job.log.1
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas       357 Feb  2 14:02 output.list
2025-02-02 06:02:07 (5564): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb  2 14:02 runtime_log
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas   2467840 Feb  2 14:02 result.tar.gz
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas       663 Feb  2 14:02 vsxKDm9ndx6nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmdoKKDmlLWFJn.diag
2025-02-02 06:02:07 (5564): Guest Log: -rw-r--r--. 1 atlas atlas     10951 Feb  2 14:02 runtime_log.err
2025-02-02 06:02:07 (5564): Guest Log: Looking for outputfile HITS.43078919._010538.pool.root.1
2025-02-02 06:02:07 (5564): Guest Log: HITS file was successfully produced
2025-02-02 06:02:07 (5564): Guest Log: -rw-------. 1 atlas atlas 326072928 Feb  2 14:00 /home/atlas/RunAtlas/HITS.43078919._010538.pool.root.1
2025-02-02 06:02:07 (5564): Guest Log: Successfully finished the ATLAS job!
2025-02-02 06:02:07 (5564): Guest Log: Copying the results back to the shared directory!
2025-02-02 06:02:08 (5564): Guest Log:  *** Contents of shared directory: ***
2025-02-02 06:02:08 (5564): Guest Log: total 659992
2025-02-02 06:02:08 (5564): Guest Log: -rwxrwxrwx. 1 root root 346748523 Feb  2 07:35 ATLAS.root_0
2025-02-02 06:02:08 (5564): Guest Log: -rwxrwxrwx. 1 root root 326072928 Feb  2 14:02 HITS.pool.root.1
2025-02-02 06:02:08 (5564): Guest Log: -rwxrwxrwx. 1 root root      8923 Feb  2 07:35 init_data.xml
2025-02-02 06:02:08 (5564): Guest Log: -rwxrwxrwx. 1 root root    503494 Jan 30 10:24 input.tar.gz
2025-02-02 06:02:08 (5564): Guest Log: -rwxrwxrwx. 1 root root   2467840 Feb  2 14:02 result.tar.gz
2025-02-02 06:02:08 (5564): Guest Log: -rwxrwxrwx. 1 root root     17569 Jan 30 10:24 start_atlas.sh
2025-02-02 06:02:08 (5564): Guest Log:  *** Success! Shutting down the machine. ***
2025-02-02 06:02:09 (5564): VM Completion File Detected.
2025-02-02 06:02:09 (5564): Powering off VM.
2025-02-02 06:02:11 (5564): Successfully stopped VM.
2025-02-02 06:02:11 (5564): Deregistering VM. (boinc_60966ebfde4312aa, slot#6)
2025-02-02 06:02:12 (5564): Removing network bandwidth throttle group from VM.
2025-02-02 06:02:13 (5564): Removing VM from VirtualBox.
06:02:20 (5564): called boinc_finish(0)

</stderr_txt>
]]>

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