Stderr output

<core_client_version>7.16.20</core_client_version>
<![CDATA[
<stderr_txt>
2025-01-28 18:54:48 (12700): Detected: vboxwrapper 26206
2025-01-28 18:54:48 (12700): Detected: BOINC client v7.16.20
2025-01-28 18:54:51 (12700): Detected: VirtualBox VboxManage Interface (Version: 6.1.32)
2025-01-28 18:54:51 (12700): Successfully copied 'init_data.xml' to the shared directory.
2025-01-28 18:54:52 (12700): Create VM. (boinc_93c8ef326228ecae, slot#3)
2025-01-28 18:54:53 (12700): Setting Memory Size for VM. (4400MB)
2025-01-28 18:54:53 (12700): Setting CPU Count for VM. (4)
2025-01-28 18:54:53 (12700): Setting Chipset Options for VM.
2025-01-28 18:54:54 (12700): Setting Graphics Controller Options for VM.
2025-01-28 18:54:54 (12700): Setting Boot Options for VM.
2025-01-28 18:54:54 (12700): Setting Network Configuration for NAT.
2025-01-28 18:54:55 (12700): Enabling VM Network Access.
2025-01-28 18:54:55 (12700): Disabling USB Support for VM.
2025-01-28 18:54:56 (12700): Disabling COM Port Support for VM.
2025-01-28 18:54:56 (12700): Disabling LPT Port Support for VM.
2025-01-28 18:54:56 (12700): Disabling Audio Support for VM.
2025-01-28 18:54:57 (12700): Disabling Clipboard Support for VM.
2025-01-28 18:54:57 (12700): Disabling Drag and Drop Support for VM.
2025-01-28 18:54:57 (12700): Adding storage controller(s) to VM.
2025-01-28 18:54:58 (12700): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-01-28 18:54:59 (12700): Adding VirtualBox Guest Additions to VM.
2025-01-28 18:54:59 (12700): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-01-28 18:54:59 (12700): forwarding host port 64318 to guest port 80
2025-01-28 18:55:00 (12700): Enabling remote desktop for VM.
2025-01-28 18:55:00 (12700): Required extension pack not installed, remote desktop not enabled.
2025-01-28 18:55:00 (12700): Enabling shared directory for VM.
2025-01-28 18:55:01 (12700): Starting VM using VBoxManage interface. (boinc_93c8ef326228ecae, slot#3)
2025-01-28 18:55:07 (12700): Successfully started VM. (PID = '13600')
2025-01-28 18:55:07 (12700): Reporting VM Process ID to BOINC.
2025-01-28 18:55:07 (12700): Guest Log: BIOS: VirtualBox 6.1.32
2025-01-28 18:55:07 (12700): Guest Log: CPUID EDX: 0x178bfbff
2025-01-28 18:55:07 (12700): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-01-28 18:55:07 (12700): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-01-28 18:55:07 (12700): VM state change detected. (old = 'poweredoff', new = 'running')
2025-01-28 18:55:07 (12700): Detected: Web Application Enabled (http://localhost:64318)
2025-01-28 18:55:07 (12700): Preference change detected
2025-01-28 18:55:07 (12700): Setting CPU throttle for VM. (50%)
2025-01-28 18:55:08 (12700): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-01-28 18:55:09 (12700): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-01-28 18:55:09 (12700): Guest Log: BIOS: Booting from Hard Disk...
2025-01-28 18:56:00 (12700): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-01-28 18:56:00 (12700): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-01-28 18:56:00 (12700): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-01-28 18:56:12 (12700): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-01-28 18:56:12 (12700): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-01-28 18:56:31 (12700): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-01-28 18:56:31 (12700): Guest Log: 00:00:00.000444 main     Log opened 2025-01-28T18:56:30.031217000Z
2025-01-28 18:56:31 (12700): Guest Log: 00:00:00.000713 main     OS Product: Linux
2025-01-28 18:56:31 (12700): Guest Log: 00:00:00.000813 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-01-28 18:56:31 (12700): Guest Log: 00:00:00.000921 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-01-28 18:56:31 (12700): Guest Log: 00:00:00.000980 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-01-28 18:56:31 (12700): Guest Log: 00:00:00.000982 main     Process ID: 1272
2025-01-28 18:56:31 (12700): Guest Log: 00:00:00.000982 main     Package type: LINUX_64BITS_GENERIC
2025-01-28 18:56:31 (12700): Guest Log: 00:00:00.002428 main     5.2.32 r132073 started. Verbose level = 0
2025-01-28 18:56:32 (12700): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-01-28 18:56:32 (12700): Guest Log: [INFO] Mounting shared directory
2025-01-28 18:56:32 (12700): Guest Log: [INFO] Checking for init_data.xml
2025-01-28 18:56:41 (12700): Guest Log: 00:00:10.032134 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 753 958 000ns (GuestNow=1 738 108 601 789 936 000 ns GuestLast=1 738 090 590 035 978 000 ns fSetTimeLastLoop=true )
2025-01-28 18:58:29 (12700): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-01-28 18:58:29 (12700): Guest Log: [INFO] Detected branch: prod
2025-01-28 18:58:31 (12700): Guest Log: This is the prod version of the ATLAS job wrapper
2025-01-28 18:58:31 (12700): Guest Log: Copying input files
2025-01-28 18:58:38 (12700): Guest Log: Copied input files into RunAtlas.
2025-01-28 18:58:38 (12700): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-01-28 18:58:38 (12700): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-01-28 18:58:38 (12700): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-01-28 18:58:38 (12700): Guest Log: Further information can be found at the LHC@home message board.
2025-01-28 19:00:29 (12700): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-01-28 19:00:32 (12700): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-01-28 19:00:32 (12700): Guest Log: 2.6.3.0 1591 2 30168 142074 3 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-01-28 19:00:35 (12700): Guest Log: copied the webapp to /var/www
2025-01-28 19:00:35 (12700): Guest Log: ATHENA_PROC_NUMBER=4
2025-01-28 19:00:35 (12700): Guest Log: ATHENA_CORE_NUMBER=4
2025-01-28 19:00:38 (12700): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-01-28 19:00:38 (12700): Guest Log:  *** Starting ATLAS job. (PandaID=6493629913 taskID=43078931) ***
2025-01-28 20:35:10 (12700): Status Report: Elapsed Time: '6000.000000'
2025-01-28 20:35:10 (12700): Status Report: CPU Time: '7889.422973'
2025-01-28 22:15:14 (12700): Status Report: Elapsed Time: '12000.000000'
2025-01-28 22:15:14 (12700): Status Report: CPU Time: '22281.310828'
2025-01-28 23:55:18 (12700): Status Report: Elapsed Time: '18000.242849'
2025-01-28 23:55:18 (12700): Status Report: CPU Time: '36657.411382'
2025-01-29 01:35:26 (12700): Status Report: Elapsed Time: '24000.242849'
2025-01-29 01:35:26 (12700): Status Report: CPU Time: '51034.635143'
2025-01-29 03:15:33 (12700): Status Report: Elapsed Time: '30000.242849'
2025-01-29 03:15:33 (12700): Status Report: CPU Time: '65405.010460'
2025-01-29 04:55:34 (12700): Status Report: Elapsed Time: '36000.242849'
2025-01-29 04:55:34 (12700): Status Report: CPU Time: '79790.861077'
2025-01-29 06:35:42 (12700): Status Report: Elapsed Time: '42000.242849'
2025-01-29 06:35:42 (12700): Status Report: CPU Time: '94077.292256'
2025-01-29 08:15:45 (12700): Status Report: Elapsed Time: '48000.242849'
2025-01-29 08:15:45 (12700): Status Report: CPU Time: '107761.294373'
2025-01-29 09:55:49 (12700): Status Report: Elapsed Time: '54000.242849'
2025-01-29 09:55:49 (12700): Status Report: CPU Time: '122115.897989'
2025-01-29 11:35:54 (12700): Status Report: Elapsed Time: '60000.242849'
2025-01-29 11:35:54 (12700): Status Report: CPU Time: '136500.032595'
2025-01-29 13:15:57 (12700): Status Report: Elapsed Time: '66000.242849'
2025-01-29 13:15:57 (12700): Status Report: CPU Time: '150890.859643'
2025-01-29 14:56:01 (12700): Status Report: Elapsed Time: '72000.242849'
2025-01-29 14:56:01 (12700): Status Report: CPU Time: '165276.538658'
2025-01-29 16:36:05 (12700): Status Report: Elapsed Time: '78000.242849'
2025-01-29 16:36:05 (12700): Status Report: CPU Time: '179667.303306'
2025-01-29 18:16:09 (12700): Status Report: Elapsed Time: '84000.242849'
2025-01-29 18:16:09 (12700): Status Report: CPU Time: '194057.849553'
2025-01-29 19:03:38 (12700): Guest Log:  *** Job finished ***
2025-01-29 19:03:38 (12700): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:26,049 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140275703523136)>', '<ExcThread(queue_monitor, started 140274839844608)>']
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:28,053 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140275703523136)>', '<ExcThread(queue_monitor, started 140274839844608)>']
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:29,498 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140275703523136)>', '<ExcThread(queue_monitor, started 140274839844608)>']
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:29,498 | INFO     | [job] queue monitor thread has finished
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:30,056 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140275703523136)>'])
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:35,071 | INFO     | all workflow threads have been joined
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:35,072 | INFO     | end of generic workflow (traces error code: 0)
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:35,073 | INFO     | traces error code: 0
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:35,073 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:35,414 [wrapper] ==== pilot stdout END ====
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:35,423 [wrapper] ==== wrapper stdout RESUME ====
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:35,432 [wrapper] pilotpid: 6037
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:35,441 [wrapper] Pilot exit status: 0
2025-01-29 19:03:38 (12700): Guest Log: ./runpilot2-wrapper.sh: line 986: /usr/bin/xargs: Input/output error
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:37,213 [wrapper] pandaids: 
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:37,271 [wrapper] cleanup supervisor_pilot 26589 6038
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:37,280 [wrapper] Test setup, not cleaning
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:37,299 [wrapper] apfmon messages muted
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:37,309 [wrapper] ==== wrapper stdout END ====
2025-01-29 19:03:38 (12700): Guest Log: 2025-01-30 00:03:37,319 [wrapper] ==== wrapper stderr END ====
2025-01-29 19:03:38 (12700): Guest Log:  *** Error codes and diagnostics ***
2025-01-29 19:03:38 (12700): Guest Log:  *** Listing of results directory ***
2025-01-29 19:03:38 (12700): Guest Log: total 26864
2025-01-29 19:03:38 (12700): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Jan 28 17:05 pilot3.tar.gz
2025-01-29 19:03:38 (12700): Guest Log: -rwx------. 1 atlas atlas   34924 Jan 28 17:19 runpilot2-wrapper.sh
2025-01-29 19:03:38 (12700): Guest Log: -rw-r--r--. 1 atlas atlas    5117 Jan 28 17:19 queuedata.json
2025-01-29 19:03:38 (12700): Guest Log: -rwxr-xr-x. 1 atlas atlas    6050 Jan 28 23:58 init_data.xml
2025-01-29 19:03:38 (12700): Guest Log: -rwxr-xr-x. 1 atlas atlas  503494 Jan 28 23:58 input.tar.gz
2025-01-29 19:03:38 (12700): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Jan 28 23:58 start_atlas.sh
2025-01-29 19:03:38 (12700): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jan 28 23:58 EVNT.43078929._000061.pool.root.1 -> /data/./ATLAS.root_0
2025-01-29 19:03:38 (12700): Guest Log: -rw-r--r--. 1 atlas atlas    2532 Jan 29 00:00 pandaJob.out
2025-01-29 19:03:38 (12700): Guest Log: -rw-------. 1 atlas atlas     424 Jan 29 00:00 setup.sh.local
2025-01-29 19:03:38 (12700): Guest Log: -rw-------. 1 atlas atlas  968634 Jan 29 00:06 agis_schedconf.cvmfs.json
2025-01-29 19:03:38 (12700): Guest Log: -rw-------. 1 atlas atlas 1580206 Jan 29 00:06 agis_ddmendpoints.agis.ALL.json
2025-01-29 19:03:38 (12700): Guest Log: drwx------. 4 atlas atlas    4096 Jan 29 00:06 pilot3
2025-01-29 19:03:38 (12700): Guest Log: -rw-------. 1 atlas atlas      95 Jan 30 00:02 pilot_heartbeat.json
2025-01-29 19:03:38 (12700): Guest Log: drwxrwx---. 2 atlas atlas    4096 Jan 30 00:03 PanDA_Pilot-6493629913
2025-01-29 19:03:38 (12700): Guest Log: -rw-------. 1 atlas atlas    1037 Jan 30 00:03 memory_monitor_summary.json
2025-01-29 19:03:38 (12700): Guest Log: -rw-------. 1 atlas atlas    1158 Jan 30 00:03 heartbeat.json
2025-01-29 19:03:38 (12700): Guest Log: -rw-------. 1 atlas atlas 7925639 Jan 30 00:03 pilotlog.txt
2025-01-29 19:03:38 (12700): Guest Log: -rw-------. 1 atlas atlas 7945823 Jan 30 00:03 log.43078931._004938.job.log.1
2025-01-29 19:03:38 (12700): Guest Log: -rw-r--r--. 1 atlas atlas     571 Jan 30 00:03 runtime_log
2025-01-29 19:03:38 (12700): Guest Log: -rw-------. 1 atlas atlas 7956480 Jan 30 00:03 result.tar.gz
2025-01-29 19:03:38 (12700): Guest Log: -rw-------. 1 atlas atlas     658 Jan 30 00:03 wM9KDmsQ4w6nsSi4ap6QjLDmwznN0nGgGQJmkKkKDmIAHKDmJWvWLn.diag
2025-01-29 19:03:38 (12700): Guest Log: -rw-r--r--. 1 atlas atlas   10281 Jan 30 00:03 runtime_log.err
2025-01-29 19:03:38 (12700): Guest Log: Looking for outputfile HITS.43078931._004938.pool.root.1
2025-01-29 19:03:38 (12700): Guest Log: No HITS file was produced
2025-01-29 19:03:38 (12700): Guest Log: Successfully finished the ATLAS job!
2025-01-29 19:03:38 (12700): Guest Log: Copying the results back to the shared directory!
2025-01-29 19:03:38 (12700): Guest Log:  *** Contents of shared directory: ***
2025-01-29 19:03:38 (12700): Guest Log: total 348064
2025-01-29 19:03:38 (12700): Guest Log: -rwxrwxrwx. 1 root root 347923132 Jan 28 23:54 ATLAS.root_0
2025-01-29 19:03:38 (12700): Guest Log: -rwxrwxrwx. 1 root root      6050 Jan 28 23:54 init_data.xml
2025-01-29 19:03:38 (12700): Guest Log: -rwxrwxrwx. 1 root root    503494 Jan 28 19:30 input.tar.gz
2025-01-29 19:03:38 (12700): Guest Log: -rwxrwxrwx. 1 root root   7956480 Jan 30 00:03 result.tar.gz
2025-01-29 19:03:38 (12700): Guest Log: -rwxrwxrwx. 1 root root     17569 Jan 28 19:30 start_atlas.sh
2025-01-29 19:03:38 (12700): Guest Log:  *** Success! Shutting down the machine. ***
2025-01-29 19:03:39 (12700): VM Completion File Detected.
2025-01-29 19:03:39 (12700): Powering off VM.
2025-01-29 19:03:40 (12700): Successfully stopped VM.
2025-01-29 19:03:40 (12700): Deregistering VM. (boinc_93c8ef326228ecae, slot#3)
2025-01-29 19:03:41 (12700): Removing network bandwidth throttle group from VM.
2025-01-29 19:03:41 (12700): Removing VM from VirtualBox.
19:03:46 (12700): called boinc_finish(0)

</stderr_txt>
]]>

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