Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-01-28 16:37:33 (934623): Detected: vboxwrapper 26206
2025-01-28 16:37:33 (934623): Detected: BOINC client v8.0.4
2025-01-28 16:37:33 (934623): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-01-28 16:37:33 (934623): Successfully copied 'init_data.xml' to the shared directory.
2025-01-28 16:37:33 (934623): Create VM. (boinc_885cdc081464ba7d, slot#0)
2025-01-28 16:37:33 (934623): Setting Memory Size for VM. (4800MB)
2025-01-28 16:37:33 (934623): Setting CPU Count for VM. (8)
2025-01-28 16:37:33 (934623): Setting Chipset Options for VM.
2025-01-28 16:37:33 (934623): Setting Graphics Controller Options for VM.
2025-01-28 16:37:33 (934623): Setting Boot Options for VM.
2025-01-28 16:37:33 (934623): Setting Network Configuration for NAT.
2025-01-28 16:37:33 (934623): Enabling VM Network Access.
2025-01-28 16:37:33 (934623): Disabling USB Support for VM.
2025-01-28 16:37:33 (934623): Disabling COM Port Support for VM.
2025-01-28 16:37:33 (934623): Disabling LPT Port Support for VM.
2025-01-28 16:37:33 (934623): Disabling Audio Support for VM.
2025-01-28 16:37:33 (934623): Disabling Clipboard Support for VM.
2025-01-28 16:37:33 (934623): Disabling Drag and Drop Support for VM.
2025-01-28 16:37:33 (934623): Adding storage controller(s) to VM.
2025-01-28 16:37:33 (934623): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-01-28 16:37:34 (934623): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-01-28 16:37:34 (934623): forwarding host port 59319 to guest port 80
2025-01-28 16:37:34 (934623): Enabling remote desktop for VM.
2025-01-28 16:37:34 (934623): Required extension pack not installed, remote desktop not enabled.
2025-01-28 16:37:34 (934623): Enabling shared directory for VM.
2025-01-28 16:37:34 (934623): Starting VM using VBoxManage interface. (boinc_885cdc081464ba7d, slot#0)
2025-01-28 16:37:36 (934623): Successfully started VM. (PID = '934881')
2025-01-28 16:37:36 (934623): Reporting VM Process ID to BOINC.
2025-01-28 16:37:36 (934623): Guest Log: BIOS: VirtualBox 7.1.4
2025-01-28 16:37:36 (934623): Guest Log: CPUID EDX: 0x178bfbff
2025-01-28 16:37:36 (934623): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-01-28 16:37:36 (934623): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-01-28 16:37:36 (934623): VM state change detected. (old = 'poweredoff', new = 'running')
2025-01-28 16:37:36 (934623): Detected: Web Application Enabled (http://localhost:59319)
2025-01-28 16:37:37 (934623): VM state change detected. (old = 'running', new = 'paused')
2025-01-28 16:37:55 (934623): Preference change detected
2025-01-28 16:37:55 (934623): Setting CPU throttle for VM. (50%)
2025-01-28 16:37:55 (934623): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-01-28 16:37:56 (934623): VM state change detected. (old = 'paused', new = 'running')
2025-01-28 16:37:57 (934623): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-01-28 16:37:57 (934623): Guest Log: BIOS: Booting from Hard Disk...
2025-01-28 16:38:00 (934623): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-01-28 16:38:00 (934623): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-01-28 16:38:00 (934623): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-01-28 16:38:08 (934623): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-01-28 16:38:08 (934623): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-01-28 16:38:15 (934623): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-01-28 16:38:15 (934623): Guest Log: 00:00:00.000189 main     Log opened 2025-01-28T15:37:55.176635000Z
2025-01-28 16:38:15 (934623): Guest Log: 00:00:00.000296 main     OS Product: Linux
2025-01-28 16:38:15 (934623): Guest Log: 00:00:00.000310 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-01-28 16:38:15 (934623): Guest Log: 00:00:00.000325 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-01-28 16:38:15 (934623): Guest Log: 00:00:00.000335 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-01-28 16:38:15 (934623): Guest Log: 00:00:00.000336 main     Process ID: 1368
2025-01-28 16:38:15 (934623): Guest Log: 00:00:00.000336 main     Package type: LINUX_64BITS_GENERIC
2025-01-28 16:38:15 (934623): Guest Log: 00:00:00.001125 main     5.2.32 r132073 started. Verbose level = 0
2025-01-28 16:38:16 (934623): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-01-28 16:38:16 (934623): Guest Log: [INFO] Mounting shared directory
2025-01-28 16:38:16 (934623): Guest Log: [INFO] Checking for init_data.xml
2025-01-28 16:38:21 (934623): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-01-28 16:38:21 (934623): Guest Log: [INFO] Detected branch: prod
2025-01-28 16:38:21 (934623): Guest Log: This is the prod version of the ATLAS job wrapper
2025-01-28 16:38:21 (934623): Guest Log: Copying input files
2025-01-28 16:38:23 (934623): Guest Log: Copied input files into RunAtlas.
2025-01-28 16:38:23 (934623): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-01-28 16:38:23 (934623): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-01-28 16:38:23 (934623): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-01-28 16:38:23 (934623): Guest Log: Further information can be found at the LHC@home message board.
2025-01-28 16:38:42 (934623): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-01-28 16:38:42 (934623): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-01-28 16:38:42 (934623): Guest Log: 2.6.3.0 1645 0 30248 142057 4 1 3117296 4096000 0 65024 0 0 n/a 1 2 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
2025-01-28 16:38:42 (934623): Guest Log: copied the webapp to /var/www
2025-01-28 16:38:42 (934623): Guest Log: ATHENA_PROC_NUMBER=8
2025-01-28 16:38:42 (934623): Guest Log: ATHENA_CORE_NUMBER=8
2025-01-28 16:38:43 (934623): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-01-28 16:38:43 (934623): Guest Log:  *** Starting ATLAS job. (PandaID=6493521941 taskID=43078907) ***
2025-01-28 18:16:56 (934623): Status Report: Elapsed Time: '6000.000000'
2025-01-28 18:16:56 (934623): Status Report: CPU Time: '18689.150000'
2025-01-28 19:55:56 (934623): Status Report: Elapsed Time: '12000.000000'
2025-01-28 19:55:56 (934623): Status Report: CPU Time: '41604.100000'
2025-01-28 20:10:04 (934623): Guest Log:  *** Job finished ***
2025-01-28 20:10:04 (934623): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:37,180 | INFO     | [data] queue_monitor thread has finished
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:40,964 | INFO     | job.realtimelogging is not enabled
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:41,966 | INFO     | [payload] run_realtimelog thread has finished
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:43,854 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139839242733376)>', '<ExcThread(monitor, started 139838783198976)>']
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:44,716 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:44,717 | INFO     | [monitor] control thread has ended
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:48,878 | INFO     | all workflow threads have been joined
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:48,878 | INFO     | end of generic workflow (traces error code: 0)
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:48,878 | INFO     | traces error code: 0
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:48,878 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:49,024 [wrapper] ==== pilot stdout END ====
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:49,028 [wrapper] ==== wrapper stdout RESUME ====
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:49,033 [wrapper] pilotpid: 6043
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:49,037 [wrapper] Pilot exit status: 0
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:49,121 [wrapper] pandaids: 6493521941
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:49,147 [wrapper] cleanup supervisor_pilot 10113 6044
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:49,151 [wrapper] Test setup, not cleaning
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:49,160 [wrapper] apfmon messages muted
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:49,164 [wrapper] ==== wrapper stdout END ====
2025-01-28 20:10:04 (934623): Guest Log: 2025-01-28 19:09:49,169 [wrapper] ==== wrapper stderr END ====
2025-01-28 20:10:04 (934623): Guest Log:  *** Error codes and diagnostics ***
2025-01-28 20:10:04 (934623): Guest Log:     "exeErrorCode": 0,
2025-01-28 20:10:04 (934623): Guest Log:     "exeErrorDiag": "",
2025-01-28 20:10:04 (934623): Guest Log:     "pilotErrorCode": 0,
2025-01-28 20:10:04 (934623): Guest Log:     "pilotErrorDiag": "",
2025-01-28 20:10:04 (934623): Guest Log:  *** Listing of results directory ***
2025-01-28 20:10:04 (934623): Guest Log: total 307448
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Jan 28 10:50 pilot3.tar.gz
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 atlas atlas      5117 Jan 28 10:57 queuedata.json
2025-01-28 20:10:04 (934623): Guest Log: -rwx------. 1 atlas atlas     34924 Jan 28 10:57 runpilot2-wrapper.sh
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Jan 28 15:38 start_atlas.sh
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 atlas atlas    503476 Jan 28 15:38 input.tar.gz
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 atlas atlas      6822 Jan 28 15:38 init_data.xml
2025-01-28 20:10:04 (934623): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 28 15:38 EVNT.43078905._000036.pool.root.1 -> /data/./ATLAS.root_0
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 atlas atlas      2519 Jan 28 15:38 pandaJob.out
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas       424 Jan 28 15:38 setup.sh.local
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas    968269 Jan 28 15:39 agis_schedconf.cvmfs.json
2025-01-28 20:10:04 (934623): Guest Log: drwx------. 4 atlas atlas      4096 Jan 28 15:39 pilot3
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas 308760541 Jan 28 19:08 HITS.43078907._000958.pool.root.1
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas      1034 Jan 28 19:09 memory_monitor_summary.json
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas   1580206 Jan 28 19:09 agis_ddmendpoints.agis.ALL.json
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas    347801 Jan 28 19:09 log.43078907._000958.job.log.tgz.1
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas        95 Jan 28 19:09 pilot_heartbeat.json
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas      7712 Jan 28 19:09 heartbeat.json
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas      4347 Jan 28 19:09 pilotlog.txt
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas    832841 Jan 28 19:09 log.43078907._000958.job.log.1
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas       357 Jan 28 19:09 output.list
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 28 19:09 runtime_log
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas   1198080 Jan 28 19:09 result.tar.gz
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas       686 Jan 28 19:09 u0zLDm7Syw6n9Rq4apOajLDm4fhM0noT9bVoFjIUDmOxFKDmctqBfn.diag
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 atlas atlas     11019 Jan 28 19:09 runtime_log.err
2025-01-28 20:10:04 (934623): Guest Log: Looking for outputfile HITS.43078907._000958.pool.root.1
2025-01-28 20:10:04 (934623): Guest Log: HITS file was successfully produced
2025-01-28 20:10:04 (934623): Guest Log: -rw-------. 1 atlas atlas 308760541 Jan 28 19:08 /home/atlas/RunAtlas/HITS.43078907._000958.pool.root.1
2025-01-28 20:10:04 (934623): Guest Log: Successfully finished the ATLAS job!
2025-01-28 20:10:04 (934623): Guest Log: Copying the results back to the shared directory!
2025-01-28 20:10:04 (934623): Guest Log:  *** Contents of shared directory: ***
2025-01-28 20:10:04 (934623): Guest Log: total 328412
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 root root 334554415 Jan 28 15:37 ATLAS.root_0
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 root root      6822 Jan 28 15:37 init_data.xml
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 root root    503476 Jan 28 15:37 input.tar.gz
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 root root   1198080 Jan 28  2025 result.tar.gz
2025-01-28 20:10:04 (934623): Guest Log: -rw-r--r--. 1 root root     17569 Jan 28 15:37 start_atlas.sh
2025-01-28 20:10:04 (934623): Guest Log:  *** Success! Shutting down the machine. ***
2025-01-28 20:10:04 (934623): VM Completion File Detected.
2025-01-28 20:10:04 (934623): Powering off VM.
2025-01-28 20:10:04 (934623): Successfully stopped VM.
2025-01-28 20:10:04 (934623): Deregistering VM. (boinc_885cdc081464ba7d, slot#0)
2025-01-28 20:10:04 (934623): Removing network bandwidth throttle group from VM.
2025-01-28 20:10:04 (934623): Removing VM from VirtualBox.
20:10:09 (934623): called boinc_finish(0)

</stderr_txt>
]]>

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