Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-01-28 12:01:22 (2951334): Detected: vboxwrapper 26206
2025-01-28 12:01:22 (2951334): Detected: BOINC client v8.0.4
2025-01-28 12:01:22 (2951334): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-01-28 12:01:22 (2951334): Successfully copied 'init_data.xml' to the shared directory.
2025-01-28 12:01:22 (2951334): Create VM. (boinc_658308c45d0315a4, slot#0)
2025-01-28 12:01:22 (2951334): Setting Memory Size for VM. (4600MB)
2025-01-28 12:01:23 (2951334): Setting CPU Count for VM. (6)
2025-01-28 12:01:23 (2951334): Setting Chipset Options for VM.
2025-01-28 12:01:23 (2951334): Setting Graphics Controller Options for VM.
2025-01-28 12:01:23 (2951334): Setting Boot Options for VM.
2025-01-28 12:01:23 (2951334): Setting Network Configuration for NAT.
2025-01-28 12:01:24 (2951334): Enabling VM Network Access.
2025-01-28 12:01:24 (2951334): Disabling USB Support for VM.
2025-01-28 12:01:24 (2951334): Disabling COM Port Support for VM.
2025-01-28 12:01:24 (2951334): Disabling LPT Port Support for VM.
2025-01-28 12:01:25 (2951334): Disabling Audio Support for VM.
2025-01-28 12:01:25 (2951334): Disabling Clipboard Support for VM.
2025-01-28 12:01:25 (2951334): Disabling Drag and Drop Support for VM.
2025-01-28 12:01:25 (2951334): Adding storage controller(s) to VM.
2025-01-28 12:01:25 (2951334): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-01-28 12:01:28 (2951334): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-01-28 12:01:28 (2951334): forwarding host port 57443 to guest port 80
2025-01-28 12:01:28 (2951334): Enabling remote desktop for VM.
2025-01-28 12:01:29 (2951334): Required extension pack not installed, remote desktop not enabled.
2025-01-28 12:01:29 (2951334): Enabling shared directory for VM.
2025-01-28 12:01:29 (2951334): Starting VM using VBoxManage interface. (boinc_658308c45d0315a4, slot#0)
2025-01-28 12:01:30 (2951334): Successfully started VM. (PID = '2951626')
2025-01-28 12:01:30 (2951334): Reporting VM Process ID to BOINC.
2025-01-28 12:01:30 (2951334): Guest Log: BIOS: VirtualBox 7.1.4
2025-01-28 12:01:30 (2951334): Guest Log: CPUID EDX: 0x178bfbff
2025-01-28 12:01:30 (2951334): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-01-28 12:01:30 (2951334): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-01-28 12:01:30 (2951334): VM state change detected. (old = 'poweredoff', new = 'running')
2025-01-28 12:01:30 (2951334): Detected: Web Application Enabled (http://localhost:57443)
2025-01-28 12:01:30 (2951334): Preference change detected
2025-01-28 12:01:30 (2951334): Setting CPU throttle for VM. (50%)
2025-01-28 12:01:30 (2951334): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-01-28 12:01:32 (2951334): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-01-28 12:01:32 (2951334): Guest Log: BIOS: Booting from Hard Disk...
2025-01-28 12:01:36 (2951334): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-01-28 12:01:36 (2951334): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-01-28 12:01:37 (2951334): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-01-28 12:01:48 (2951334): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-01-28 12:01:48 (2951334): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-01-28 12:02:00 (2951334): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-01-28 12:02:00 (2951334): Guest Log: 00:00:00.000187 main     Log opened 2025-01-28T11:01:57.886250000Z
2025-01-28 12:02:00 (2951334): Guest Log: 00:00:00.000295 main     OS Product: Linux
2025-01-28 12:02:00 (2951334): Guest Log: 00:00:00.000328 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-01-28 12:02:00 (2951334): Guest Log: 00:00:00.000354 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-01-28 12:02:00 (2951334): Guest Log: 00:00:00.000380 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-01-28 12:02:00 (2951334): Guest Log: 00:00:00.000381 main     Process ID: 1336
2025-01-28 12:02:00 (2951334): Guest Log: 00:00:00.000382 main     Package type: LINUX_64BITS_GENERIC
2025-01-28 12:02:00 (2951334): Guest Log: 00:00:00.001907 main     5.2.32 r132073 started. Verbose level = 0
2025-01-28 12:02:00 (2951334): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-01-28 12:02:00 (2951334): Guest Log: [INFO] Mounting shared directory
2025-01-28 12:02:00 (2951334): Guest Log: [INFO] Checking for init_data.xml
2025-01-28 12:02:21 (2951334): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-01-28 12:02:21 (2951334): Guest Log: [INFO] Detected branch: prod
2025-01-28 12:02:21 (2951334): Guest Log: This is the prod version of the ATLAS job wrapper
2025-01-28 12:02:21 (2951334): Guest Log: Copying input files
2025-01-28 12:02:26 (2951334): Guest Log: Copied input files into RunAtlas.
2025-01-28 12:02:26 (2951334): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-01-28 12:02:26 (2951334): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-01-28 12:02:26 (2951334): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-01-28 12:02:26 (2951334): Guest Log: Further information can be found at the LHC@home message board.
2025-01-28 12:02:56 (2951334): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-01-28 12:02:58 (2951334): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-01-28 12:02:58 (2951334): Guest Log: 2.6.3.0 1635 0 32260 142052 3 1 3117296 4096000 0 65024 0 0 n/a 1 3 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2025-01-28 12:03:01 (2951334): Guest Log: copied the webapp to /var/www
2025-01-28 12:03:01 (2951334): Guest Log: ATHENA_PROC_NUMBER=6
2025-01-28 12:03:01 (2951334): Guest Log: ATHENA_CORE_NUMBER=6
2025-01-28 12:03:01 (2951334): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-01-28 12:03:02 (2951334): Guest Log:  *** Starting ATLAS job. (PandaID=6493471841 taskID=43078931) ***
2025-01-28 13:40:31 (2951334): Status Report: Elapsed Time: '6000.000000'
2025-01-28 13:40:31 (2951334): Status Report: CPU Time: '14510.540000'
2025-01-28 15:19:31 (2951334): Status Report: Elapsed Time: '12000.000000'
2025-01-28 15:19:31 (2951334): Status Report: CPU Time: '33429.430000'
2025-01-28 16:58:32 (2951334): Status Report: Elapsed Time: '18000.000000'
2025-01-28 16:58:32 (2951334): Status Report: CPU Time: '52319.940000'
2025-01-28 18:37:32 (2951334): Status Report: Elapsed Time: '24000.000000'
2025-01-28 18:37:32 (2951334): Status Report: CPU Time: '71149.050000'
2025-01-28 20:16:33 (2951334): Status Report: Elapsed Time: '30000.000000'
2025-01-28 20:16:33 (2951334): Status Report: CPU Time: '90105.050000'
2025-01-28 20:42:02 (2951334): Guest Log:  *** Job finished ***
2025-01-28 20:42:02 (2951334): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:45,066 | INFO     | [payload] execute_payloads thread has finished
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:45,402 | INFO     | [job] control thread has finished
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:48,256 | INFO     | [data] queue_monitor thread has finished
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:48,680 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140270676551488)>', '<ExcThread(monitor, started 140269831825152)>']
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:49,417 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:49,418 | INFO     | [monitor] control thread has ended
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:53,689 | INFO     | all workflow threads have been joined
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:53,690 | INFO     | end of generic workflow (traces error code: 0)
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:53,690 | INFO     | traces error code: 0
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:53,691 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:54,236 [wrapper] ==== pilot stdout END ====
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:54,241 [wrapper] ==== wrapper stdout RESUME ====
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:54,245 [wrapper] pilotpid: 6010
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:41:54,251 [wrapper] Pilot exit status: 0
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:42:01,114 [wrapper] pandaids: 6493471841
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:42:01,230 [wrapper] cleanup supervisor_pilot   325 6011
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:42:01,236 [wrapper] Test setup, not cleaning
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:42:01,249 [wrapper] apfmon messages muted
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:42:01,255 [wrapper] ==== wrapper stdout END ====
2025-01-28 20:42:02 (2951334): Guest Log: 2025-01-28 19:42:01,260 [wrapper] ==== wrapper stderr END ====
2025-01-28 20:42:02 (2951334): Guest Log:  *** Error codes and diagnostics ***
2025-01-28 20:42:02 (2951334): Guest Log:     "exeErrorCode": 0,
2025-01-28 20:42:02 (2951334): Guest Log:     "exeErrorDiag": "",
2025-01-28 20:42:02 (2951334): Guest Log:     "pilotErrorCode": 0,
2025-01-28 20:42:02 (2951334): Guest Log:     "pilotErrorDiag": "",
2025-01-28 20:42:02 (2951334): Guest Log:  *** Listing of results directory ***
2025-01-28 20:42:02 (2951334): Guest Log: total 349244
2025-01-28 20:42:02 (2951334): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Jan 28 09:22 pilot3.tar.gz
2025-01-28 20:42:02 (2951334): Guest Log: -rwx------. 1 atlas atlas     34924 Jan 28 09:27 runpilot2-wrapper.sh
2025-01-28 20:42:02 (2951334): Guest Log: -rw-r--r--. 1 atlas atlas      5652 Jan 28 09:27 queuedata.json
2025-01-28 20:42:02 (2951334): Guest Log: -rw-r--r--. 1 atlas atlas      6640 Jan 28 11:02 init_data.xml
2025-01-28 20:42:02 (2951334): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Jan 28 11:02 start_atlas.sh
2025-01-28 20:42:02 (2951334): Guest Log: -rw-r--r--. 1 atlas atlas    503538 Jan 28 11:02 input.tar.gz
2025-01-28 20:42:02 (2951334): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 28 11:02 EVNT.43078929._000102.pool.root.1 -> /data/./ATLAS.root_0
2025-01-28 20:42:02 (2951334): Guest Log: -rw-r--r--. 1 atlas atlas      2533 Jan 28 11:02 pandaJob.out
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas       424 Jan 28 11:03 setup.sh.local
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas    968638 Jan 28 11:04 agis_schedconf.cvmfs.json
2025-01-28 20:42:02 (2951334): Guest Log: drwx------. 4 atlas atlas      4096 Jan 28 11:04 pilot3
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas 348711364 Jan 28 19:39 HITS.43078931._002491.pool.root.1
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas        95 Jan 28 19:40 pilot_heartbeat.json
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas      1036 Jan 28 19:41 memory_monitor_summary.json
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas   1580206 Jan 28 19:41 agis_ddmendpoints.agis.ALL.json
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas    459697 Jan 28 19:41 log.43078931._002491.job.log.tgz.1
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas      7717 Jan 28 19:41 heartbeat.json
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas      4275 Jan 28 19:41 pilotlog.txt
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas   2138718 Jan 28 19:42 log.43078931._002491.job.log.1
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas       357 Jan 28 19:42 output.list
2025-01-28 20:42:02 (2951334): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 28 19:42 runtime_log
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas   2621440 Jan 28 19:42 result.tar.gz
2025-01-28 20:42:02 (2951334): Guest Log: -rw-r--r--. 1 atlas atlas     11016 Jan 28 19:42 runtime_log.err
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas       687 Jan 28 19:42 L3gNDmo3ww6n9Rq4apOajLDm4fhM0noT9bVoFjIUDm7jFKDmAnScen.diag
2025-01-28 20:42:02 (2951334): Guest Log: Looking for outputfile HITS.43078931._002491.pool.root.1
2025-01-28 20:42:02 (2951334): Guest Log: HITS file was successfully produced
2025-01-28 20:42:02 (2951334): Guest Log: -rw-------. 1 atlas atlas 348711364 Jan 28 19:39 /home/atlas/RunAtlas/HITS.43078931._002491.pool.root.1
2025-01-28 20:42:03 (2951334): Guest Log: Successfully finished the ATLAS job!
2025-01-28 20:42:03 (2951334): Guest Log: Copying the results back to the shared directory!
2025-01-28 20:42:03 (2951334): Guest Log:  *** Contents of shared directory: ***
2025-01-28 20:42:03 (2951334): Guest Log: total 341428
2025-01-28 20:42:03 (2951334): Guest Log: -rw-r--r--. 1 root root 346463773 Jan 28 11:01 ATLAS.root_0
2025-01-28 20:42:03 (2951334): Guest Log: -rw-r--r--. 1 root root      6640 Jan 28 11:01 init_data.xml
2025-01-28 20:42:03 (2951334): Guest Log: -rw-r--r--. 1 root root    503538 Jan 28 11:01 input.tar.gz
2025-01-28 20:42:03 (2951334): Guest Log: -rw-r--r--. 1 root root   2621440 Jan 28 19:42 result.tar.gz
2025-01-28 20:42:03 (2951334): Guest Log: -rw-r--r--. 1 root root     17569 Jan 28 11:01 start_atlas.sh
2025-01-28 20:42:03 (2951334): Guest Log:  *** Success! Shutting down the machine. ***
2025-01-28 20:42:03 (2951334): VM Completion File Detected.
2025-01-28 20:42:03 (2951334): Powering off VM.
2025-01-28 20:42:04 (2951334): Successfully stopped VM.
2025-01-28 20:42:04 (2951334): Deregistering VM. (boinc_658308c45d0315a4, slot#0)
2025-01-28 20:42:04 (2951334): Removing network bandwidth throttle group from VM.
2025-01-28 20:42:04 (2951334): Removing VM from VirtualBox.
20:42:09 (2951334): called boinc_finish(0)

</stderr_txt>
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