Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-01-28 19:10:51 (2056121): Detected: vboxwrapper 26206
2025-01-28 19:10:51 (2056121): Detected: BOINC client v8.0.4
2025-01-28 19:10:51 (2056121): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-01-28 19:10:52 (2056121): Successfully copied 'init_data.xml' to the shared directory.
2025-01-28 19:10:52 (2056121): Create VM. (boinc_ffe813fd5b8f5ea9, slot#0)
2025-01-28 19:10:52 (2056121): Setting Memory Size for VM. (4600MB)
2025-01-28 19:10:52 (2056121): Setting CPU Count for VM. (6)
2025-01-28 19:10:52 (2056121): Setting Chipset Options for VM.
2025-01-28 19:10:52 (2056121): Setting Graphics Controller Options for VM.
2025-01-28 19:10:53 (2056121): Setting Boot Options for VM.
2025-01-28 19:10:53 (2056121): Setting Network Configuration for NAT.
2025-01-28 19:10:53 (2056121): Enabling VM Network Access.
2025-01-28 19:10:53 (2056121): Disabling USB Support for VM.
2025-01-28 19:10:53 (2056121): Disabling COM Port Support for VM.
2025-01-28 19:10:53 (2056121): Disabling LPT Port Support for VM.
2025-01-28 19:10:53 (2056121): Disabling Audio Support for VM.
2025-01-28 19:10:54 (2056121): Disabling Clipboard Support for VM.
2025-01-28 19:10:54 (2056121): Disabling Drag and Drop Support for VM.
2025-01-28 19:10:54 (2056121): Adding storage controller(s) to VM.
2025-01-28 19:10:54 (2056121): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-01-28 19:10:56 (2056121): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-01-28 19:10:56 (2056121): forwarding host port 45859 to guest port 80
2025-01-28 19:10:56 (2056121): Enabling remote desktop for VM.
2025-01-28 19:10:56 (2056121): Required extension pack not installed, remote desktop not enabled.
2025-01-28 19:10:56 (2056121): Enabling shared directory for VM.
2025-01-28 19:10:57 (2056121): Starting VM using VBoxManage interface. (boinc_ffe813fd5b8f5ea9, slot#0)
2025-01-28 19:10:58 (2056121): Successfully started VM. (PID = '2056406')
2025-01-28 19:10:58 (2056121): Reporting VM Process ID to BOINC.
2025-01-28 19:10:58 (2056121): Guest Log: BIOS: VirtualBox 7.1.4
2025-01-28 19:10:58 (2056121): Guest Log: CPUID EDX: 0x178bfbff
2025-01-28 19:10:58 (2056121): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-01-28 19:10:58 (2056121): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-01-28 19:10:58 (2056121): VM state change detected. (old = 'poweredoff', new = 'running')
2025-01-28 19:10:58 (2056121): Detected: Web Application Enabled (http://localhost:45859)
2025-01-28 19:10:58 (2056121): Preference change detected
2025-01-28 19:10:58 (2056121): Setting CPU throttle for VM. (50%)
2025-01-28 19:10:58 (2056121): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-01-28 19:11:00 (2056121): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-01-28 19:11:00 (2056121): Guest Log: BIOS: Booting from Hard Disk...
2025-01-28 19:11:06 (2056121): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-01-28 19:11:06 (2056121): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-01-28 19:11:07 (2056121): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-01-28 19:11:23 (2056121): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-01-28 19:11:23 (2056121): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-01-28 19:11:39 (2056121): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-01-28 19:11:39 (2056121): Guest Log: 00:00:00.000276 main     Log opened 2025-01-28T18:11:37.081007000Z
2025-01-28 19:11:39 (2056121): Guest Log: 00:00:00.000431 main     OS Product: Linux
2025-01-28 19:11:39 (2056121): Guest Log: 00:00:00.000487 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-01-28 19:11:39 (2056121): Guest Log: 00:00:00.000528 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-01-28 19:11:39 (2056121): Guest Log: 00:00:00.000569 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-01-28 19:11:39 (2056121): Guest Log: 00:00:00.000571 main     Process ID: 1336
2025-01-28 19:11:39 (2056121): Guest Log: 00:00:00.000572 main     Package type: LINUX_64BITS_GENERIC
2025-01-28 19:11:39 (2056121): Guest Log: 00:00:00.005017 main     5.2.32 r132073 started. Verbose level = 0
2025-01-28 19:11:40 (2056121): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-01-28 19:11:40 (2056121): Guest Log: [INFO] Mounting shared directory
2025-01-28 19:11:40 (2056121): Guest Log: [INFO] Checking for init_data.xml
2025-01-28 19:11:50 (2056121): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-01-28 19:11:50 (2056121): Guest Log: [INFO] Detected branch: prod
2025-01-28 19:11:50 (2056121): Guest Log: This is the prod version of the ATLAS job wrapper
2025-01-28 19:11:50 (2056121): Guest Log: Copying input files
2025-01-28 19:11:55 (2056121): Guest Log: Copied input files into RunAtlas.
2025-01-28 19:11:55 (2056121): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-01-28 19:11:55 (2056121): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-01-28 19:11:55 (2056121): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-01-28 19:11:55 (2056121): Guest Log: Further information can be found at the LHC@home message board.
2025-01-28 19:12:15 (2056121): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-01-28 19:12:16 (2056121): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-01-28 19:12:16 (2056121): Guest Log: 2.6.3.0 1615 0 32244 142064 3 1 3117296 4096000 0 65024 0 0 n/a 1 3 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.35.143:3126 1
2025-01-28 19:12:18 (2056121): Guest Log: copied the webapp to /var/www
2025-01-28 19:12:19 (2056121): Guest Log: ATHENA_PROC_NUMBER=6
2025-01-28 19:12:19 (2056121): Guest Log: ATHENA_CORE_NUMBER=6
2025-01-28 19:12:19 (2056121): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-01-28 19:12:19 (2056121): Guest Log:  *** Starting ATLAS job. (PandaID=6493470143 taskID=43078931) ***
2025-01-28 20:49:59 (2056121): Status Report: Elapsed Time: '6000.000000'
2025-01-28 20:49:59 (2056121): Status Report: CPU Time: '14290.340000'
2025-01-28 22:28:59 (2056121): Status Report: Elapsed Time: '12000.000000'
2025-01-28 22:28:59 (2056121): Status Report: CPU Time: '33483.110000'
2025-01-29 00:08:00 (2056121): Status Report: Elapsed Time: '18000.000000'
2025-01-29 00:08:00 (2056121): Status Report: CPU Time: '52618.810000'
2025-01-29 01:47:00 (2056121): Status Report: Elapsed Time: '24000.000000'
2025-01-29 01:47:00 (2056121): Status Report: CPU Time: '71779.310000'
2025-01-29 03:25:38 (2056121): Guest Log:  *** Job finished ***
2025-01-29 03:25:38 (2056121): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:21,572 | INFO     | [job] validate thread has finished
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:22,482 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:26,486 | INFO     | [data] queue_monitor thread has finished
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:27,132 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140623905515328)>', '<ExcThread(monitor, started 140623168386816)>']
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:27,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:27,428 | INFO     | [monitor] control thread has ended
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:32,138 | INFO     | all workflow threads have been joined
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:32,139 | INFO     | end of generic workflow (traces error code: 0)
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:32,139 | INFO     | traces error code: 0
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:32,140 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:32,303 [wrapper] ==== pilot stdout END ====
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:32,311 [wrapper] ==== wrapper stdout RESUME ====
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:32,321 [wrapper] pilotpid: 5997
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:32,333 [wrapper] Pilot exit status: 0
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:36,324 [wrapper] pandaids: 6493470143
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:36,443 [wrapper] cleanup supervisor_pilot 30228 5998
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:36,452 [wrapper] Test setup, not cleaning
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:36,465 [wrapper] apfmon messages muted
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:36,471 [wrapper] ==== wrapper stdout END ====
2025-01-29 03:25:38 (2056121): Guest Log: 2025-01-29 02:25:36,477 [wrapper] ==== wrapper stderr END ====
2025-01-29 03:25:38 (2056121): Guest Log:  *** Error codes and diagnostics ***
2025-01-29 03:25:38 (2056121): Guest Log:     "exeErrorCode": 0,
2025-01-29 03:25:38 (2056121): Guest Log:     "exeErrorDiag": "",
2025-01-29 03:25:38 (2056121): Guest Log:     "pilotErrorCode": 0,
2025-01-29 03:25:38 (2056121): Guest Log:     "pilotErrorDiag": "",
2025-01-29 03:25:38 (2056121): Guest Log:  *** Listing of results directory ***
2025-01-29 03:25:38 (2056121): Guest Log: total 347856
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Jan 28 08:39 pilot3.tar.gz
2025-01-29 03:25:38 (2056121): Guest Log: -rwx------. 1 atlas atlas     34924 Jan 28 08:44 runpilot2-wrapper.sh
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 atlas atlas      5652 Jan 28 08:44 queuedata.json
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 atlas atlas      6644 Jan 28 18:11 init_data.xml
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Jan 28 18:11 start_atlas.sh
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 atlas atlas    503538 Jan 28 18:11 input.tar.gz
2025-01-29 03:25:38 (2056121): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 28 18:11 EVNT.43078929._000039.pool.root.1 -> /data/./ATLAS.root_0
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 atlas atlas      2532 Jan 28 18:12 pandaJob.out
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas       424 Jan 28 18:12 setup.sh.local
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas    968256 Jan 28 18:14 agis_schedconf.cvmfs.json
2025-01-29 03:25:38 (2056121): Guest Log: drwx------. 4 atlas atlas      4096 Jan 28 18:14 pilot3
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas 347035412 Jan 29 02:23 HITS.43078931._000912.pool.root.1
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas      1036 Jan 29 02:25 memory_monitor_summary.json
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas   1580185 Jan 29 02:25 agis_ddmendpoints.agis.ALL.json
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas    452276 Jan 29 02:25 log.43078931._000912.job.log.tgz.1
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas        95 Jan 29 02:25 pilot_heartbeat.json
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas      7711 Jan 29 02:25 heartbeat.json
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas      4398 Jan 29 02:25 pilotlog.txt
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas   2277439 Jan 29 02:25 log.43078931._000912.job.log.1
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas       357 Jan 29 02:25 output.list
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 29 02:25 runtime_log
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas   2744320 Jan 29 02:25 result.tar.gz
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 atlas atlas     11028 Jan 29 02:25 runtime_log.err
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas       691 Jan 29 02:25 lq4MDmbNww6n9Rq4apOajLDm4fhM0noT9bVoFjIUDmoWFKDmEdjypm.diag
2025-01-29 03:25:38 (2056121): Guest Log: Looking for outputfile HITS.43078931._000912.pool.root.1
2025-01-29 03:25:38 (2056121): Guest Log: HITS file was successfully produced
2025-01-29 03:25:38 (2056121): Guest Log: -rw-------. 1 atlas atlas 347035412 Jan 29 02:23 /home/atlas/RunAtlas/HITS.43078931._000912.pool.root.1
2025-01-29 03:25:38 (2056121): Guest Log: Successfully finished the ATLAS job!
2025-01-29 03:25:38 (2056121): Guest Log: Copying the results back to the shared directory!
2025-01-29 03:25:38 (2056121): Guest Log:  *** Contents of shared directory: ***
2025-01-29 03:25:38 (2056121): Guest Log: total 344704
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 root root 349696828 Jan 28 18:10 ATLAS.root_0
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 root root      6644 Jan 28 18:10 init_data.xml
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 root root    503538 Jan 28 18:10 input.tar.gz
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 root root   2744320 Jan 29 02:25 result.tar.gz
2025-01-29 03:25:38 (2056121): Guest Log: -rw-r--r--. 1 root root     17569 Jan 28 18:10 start_atlas.sh
2025-01-29 03:25:38 (2056121): Guest Log:  *** Success! Shutting down the machine. ***
2025-01-29 03:25:38 (2056121): VM Completion File Detected.
2025-01-29 03:25:38 (2056121): Powering off VM.
2025-01-29 03:25:38 (2056121): Successfully stopped VM.
2025-01-29 03:25:38 (2056121): Deregistering VM. (boinc_ffe813fd5b8f5ea9, slot#0)
2025-01-29 03:25:38 (2056121): Removing network bandwidth throttle group from VM.
2025-01-29 03:25:38 (2056121): Removing VM from VirtualBox.
03:25:44 (2056121): called boinc_finish(0)

</stderr_txt>
]]>

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