Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-01-28 10:19:56 (2110600): Detected: vboxwrapper 26206
2025-01-28 10:19:56 (2110600): Detected: BOINC client v8.0.4
2025-01-28 10:19:56 (2110600): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-01-28 10:19:56 (2110600): Successfully copied 'init_data.xml' to the shared directory.
2025-01-28 10:19:56 (2110600): Create VM. (boinc_0626909c6d3b65a3, slot#0)
2025-01-28 10:19:57 (2110600): Setting Memory Size for VM. (4600MB)
2025-01-28 10:19:57 (2110600): Setting CPU Count for VM. (6)
2025-01-28 10:19:57 (2110600): Setting Chipset Options for VM.
2025-01-28 10:19:58 (2110600): Setting Graphics Controller Options for VM.
2025-01-28 10:19:58 (2110600): Setting Boot Options for VM.
2025-01-28 10:19:58 (2110600): Setting Network Configuration for NAT.
2025-01-28 10:19:58 (2110600): Enabling VM Network Access.
2025-01-28 10:19:58 (2110600): Disabling USB Support for VM.
2025-01-28 10:19:58 (2110600): Disabling COM Port Support for VM.
2025-01-28 10:19:58 (2110600): Disabling LPT Port Support for VM.
2025-01-28 10:19:59 (2110600): Disabling Audio Support for VM.
2025-01-28 10:19:59 (2110600): Disabling Clipboard Support for VM.
2025-01-28 10:19:59 (2110600): Disabling Drag and Drop Support for VM.
2025-01-28 10:19:59 (2110600): Adding storage controller(s) to VM.
2025-01-28 10:19:59 (2110600): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-01-28 10:20:01 (2110600): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-01-28 10:20:02 (2110600): forwarding host port 53461 to guest port 80
2025-01-28 10:20:02 (2110600): Enabling remote desktop for VM.
2025-01-28 10:20:02 (2110600): Required extension pack not installed, remote desktop not enabled.
2025-01-28 10:20:02 (2110600): Enabling shared directory for VM.
2025-01-28 10:20:02 (2110600): Starting VM using VBoxManage interface. (boinc_0626909c6d3b65a3, slot#0)
2025-01-28 10:20:03 (2110600): Successfully started VM. (PID = '2110885')
2025-01-28 10:20:03 (2110600): Reporting VM Process ID to BOINC.
2025-01-28 10:20:03 (2110600): Guest Log: BIOS: VirtualBox 7.1.4
2025-01-28 10:20:03 (2110600): Guest Log: CPUID EDX: 0x178bfbff
2025-01-28 10:20:03 (2110600): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-01-28 10:20:03 (2110600): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-01-28 10:20:03 (2110600): VM state change detected. (old = 'poweredoff', new = 'running')
2025-01-28 10:20:03 (2110600): Detected: Web Application Enabled (http://localhost:53461)
2025-01-28 10:20:03 (2110600): Preference change detected
2025-01-28 10:20:03 (2110600): Setting CPU throttle for VM. (50%)
2025-01-28 10:20:03 (2110600): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-01-28 10:20:05 (2110600): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-01-28 10:20:05 (2110600): Guest Log: BIOS: Booting from Hard Disk...
2025-01-28 10:20:12 (2110600): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-01-28 10:20:12 (2110600): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-01-28 10:20:12 (2110600): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-01-28 10:20:25 (2110600): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-01-28 10:20:25 (2110600): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-01-28 10:20:44 (2110600): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-01-28 10:20:44 (2110600): Guest Log: 00:00:00.000151 main     Log opened 2025-01-28T09:20:41.784458000Z
2025-01-28 10:20:44 (2110600): Guest Log: 00:00:00.000228 main     OS Product: Linux
2025-01-28 10:20:44 (2110600): Guest Log: 00:00:00.000253 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-01-28 10:20:44 (2110600): Guest Log: 00:00:00.000272 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-01-28 10:20:44 (2110600): Guest Log: 00:00:00.000298 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-01-28 10:20:44 (2110600): Guest Log: 00:00:00.000299 main     Process ID: 1344
2025-01-28 10:20:44 (2110600): Guest Log: 00:00:00.000300 main     Package type: LINUX_64BITS_GENERIC
2025-01-28 10:20:44 (2110600): Guest Log: 00:00:00.001531 main     5.2.32 r132073 started. Verbose level = 0
2025-01-28 10:20:44 (2110600): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-01-28 10:20:44 (2110600): Guest Log: [INFO] Mounting shared directory
2025-01-28 10:20:44 (2110600): Guest Log: [INFO] Checking for init_data.xml
2025-01-28 10:21:13 (2110600): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-01-28 10:21:13 (2110600): Guest Log: [INFO] Detected branch: prod
2025-01-28 10:21:13 (2110600): Guest Log: This is the prod version of the ATLAS job wrapper
2025-01-28 10:21:13 (2110600): Guest Log: Copying input files
2025-01-28 10:21:17 (2110600): Guest Log: Copied input files into RunAtlas.
2025-01-28 10:21:17 (2110600): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-01-28 10:21:17 (2110600): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-01-28 10:21:17 (2110600): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-01-28 10:21:17 (2110600): Guest Log: Further information can be found at the LHC@home message board.
2025-01-28 10:21:37 (2110600): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-01-28 10:21:38 (2110600): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-01-28 10:21:38 (2110600): Guest Log: 2.6.3.0 1643 0 30204 142050 3 1 3117296 4096000 0 65024 0 0 n/a 1 9 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
2025-01-28 10:21:41 (2110600): Guest Log: copied the webapp to /var/www
2025-01-28 10:21:41 (2110600): Guest Log: ATHENA_PROC_NUMBER=6
2025-01-28 10:21:41 (2110600): Guest Log: ATHENA_CORE_NUMBER=6
2025-01-28 10:21:42 (2110600): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-01-28 10:21:42 (2110600): Guest Log:  *** Starting ATLAS job. (PandaID=6493469010 taskID=43078919) ***
2025-01-28 11:59:04 (2110600): Status Report: Elapsed Time: '6000.000000'
2025-01-28 11:59:04 (2110600): Status Report: CPU Time: '15110.740000'
2025-01-28 13:38:04 (2110600): Status Report: Elapsed Time: '12000.000000'
2025-01-28 13:38:04 (2110600): Status Report: CPU Time: '34721.560000'
2025-01-28 15:17:05 (2110600): Status Report: Elapsed Time: '18000.000000'
2025-01-28 15:17:05 (2110600): Status Report: CPU Time: '54456.640000'
2025-01-28 16:56:05 (2110600): Status Report: Elapsed Time: '24000.000000'
2025-01-28 16:56:05 (2110600): Status Report: CPU Time: '74110.160000'
2025-01-28 17:51:06 (2110600): Guest Log:  *** Job finished ***
2025-01-28 17:51:06 (2110600): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:50:55,237 | INFO     | [data] copytool_out thread has finished
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:50:55,910 | INFO     | [job] control thread has finished
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:50:57,698 | INFO     | [data] queue_monitor thread has finished
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:50:59,128 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139912354039616)>', '<ExcThread(monitor, started 139911621494528)>']
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:50:59,253 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:50:59,254 | INFO     | [monitor] control thread has ended
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,142 | INFO     | all workflow threads have been joined
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,143 | INFO     | end of generic workflow (traces error code: 0)
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,144 | INFO     | traces error code: 0
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,144 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,279 [wrapper] ==== pilot stdout END ====
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,289 [wrapper] ==== wrapper stdout RESUME ====
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,299 [wrapper] pilotpid: 6022
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,309 [wrapper] Pilot exit status: 0
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,466 [wrapper] pandaids: 6493469010
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,565 [wrapper] cleanup supervisor_pilot 28942 6023
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,569 [wrapper] Test setup, not cleaning
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,577 [wrapper] apfmon messages muted
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,580 [wrapper] ==== wrapper stdout END ====
2025-01-28 17:51:06 (2110600): Guest Log: 2025-01-28 16:51:04,584 [wrapper] ==== wrapper stderr END ====
2025-01-28 17:51:06 (2110600): Guest Log:  *** Error codes and diagnostics ***
2025-01-28 17:51:06 (2110600): Guest Log:     "exeErrorCode": 0,
2025-01-28 17:51:06 (2110600): Guest Log:     "exeErrorDiag": "",
2025-01-28 17:51:06 (2110600): Guest Log:     "pilotErrorCode": 0,
2025-01-28 17:51:06 (2110600): Guest Log:     "pilotErrorDiag": "",
2025-01-28 17:51:06 (2110600): Guest Log:  *** Listing of results directory ***
2025-01-28 17:51:06 (2110600): Guest Log: total 337000
2025-01-28 17:51:06 (2110600): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Jan 28 08:39 pilot3.tar.gz
2025-01-28 17:51:06 (2110600): Guest Log: -rwx------. 1 atlas atlas     34924 Jan 28 08:42 runpilot2-wrapper.sh
2025-01-28 17:51:06 (2110600): Guest Log: -rw-r--r--. 1 atlas atlas      5652 Jan 28 08:42 queuedata.json
2025-01-28 17:51:06 (2110600): Guest Log: -rw-r--r--. 1 atlas atlas     17569 Jan 28 09:21 start_atlas.sh
2025-01-28 17:51:06 (2110600): Guest Log: -rw-r--r--. 1 atlas atlas      6644 Jan 28 09:21 init_data.xml
2025-01-28 17:51:06 (2110600): Guest Log: -rw-r--r--. 1 atlas atlas    503542 Jan 28 09:21 input.tar.gz
2025-01-28 17:51:06 (2110600): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 28 09:21 EVNT.43078917._000006.pool.root.1 -> /data/./ATLAS.root_0
2025-01-28 17:51:06 (2110600): Guest Log: -rw-r--r--. 1 atlas atlas      2541 Jan 28 09:21 pandaJob.out
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas       424 Jan 28 09:21 setup.sh.local
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas    968638 Jan 28 09:23 agis_schedconf.cvmfs.json
2025-01-28 17:51:06 (2110600): Guest Log: drwx------. 4 atlas atlas      4096 Jan 28 09:23 pilot3
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas 336746640 Jan 28 16:48 HITS.43078919._000143.pool.root.1
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas      1034 Jan 28 16:49 memory_monitor_summary.json
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas   1580206 Jan 28 16:50 agis_ddmendpoints.agis.ALL.json
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas    435600 Jan 28 16:50 log.43078919._000143.job.log.tgz.1
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas        95 Jan 28 16:50 pilot_heartbeat.json
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas      7707 Jan 28 16:50 heartbeat.json
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas      4398 Jan 28 16:51 pilotlog.txt
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas   1882021 Jan 28 16:51 log.43078919._000143.job.log.1
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas       357 Jan 28 16:51 output.list
2025-01-28 17:51:06 (2110600): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 28 16:51 runtime_log
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas   2334720 Jan 28 16:51 result.tar.gz
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas       691 Jan 28 16:51 ScJNDm9Lww6n9Rq4apOajLDm4fhM0noT9bVoFjIUDmdRFKDmBocBFm.diag
2025-01-28 17:51:06 (2110600): Guest Log: -rw-r--r--. 1 atlas atlas     11028 Jan 28 16:51 runtime_log.err
2025-01-28 17:51:06 (2110600): Guest Log: Looking for outputfile HITS.43078919._000143.pool.root.1
2025-01-28 17:51:06 (2110600): Guest Log: HITS file was successfully produced
2025-01-28 17:51:06 (2110600): Guest Log: -rw-------. 1 atlas atlas 336746640 Jan 28 16:48 /home/atlas/RunAtlas/HITS.43078919._000143.pool.root.1
2025-01-28 17:51:07 (2110600): Guest Log: Successfully finished the ATLAS job!
2025-01-28 17:51:07 (2110600): Guest Log: Copying the results back to the shared directory!
2025-01-28 17:51:07 (2110600): Guest Log:  *** Contents of shared directory: ***
2025-01-28 17:51:07 (2110600): Guest Log: total 335160
2025-01-28 17:51:07 (2110600): Guest Log: -rw-r--r--. 1 root root 340333807 Jan 28 09:19 ATLAS.root_0
2025-01-28 17:51:07 (2110600): Guest Log: -rw-r--r--. 1 root root      6644 Jan 28 09:19 init_data.xml
2025-01-28 17:51:07 (2110600): Guest Log: -rw-r--r--. 1 root root    503542 Jan 28 09:19 input.tar.gz
2025-01-28 17:51:07 (2110600): Guest Log: -rw-r--r--. 1 root root   2334720 Jan 28 16:51 result.tar.gz
2025-01-28 17:51:07 (2110600): Guest Log: -rw-r--r--. 1 root root     17569 Jan 28 09:19 start_atlas.sh
2025-01-28 17:51:07 (2110600): Guest Log:  *** Success! Shutting down the machine. ***
2025-01-28 17:51:07 (2110600): VM Completion File Detected.
2025-01-28 17:51:07 (2110600): Powering off VM.
2025-01-28 17:51:08 (2110600): Successfully stopped VM.
2025-01-28 17:51:08 (2110600): Deregistering VM. (boinc_0626909c6d3b65a3, slot#0)
2025-01-28 17:51:08 (2110600): Removing network bandwidth throttle group from VM.
2025-01-28 17:51:08 (2110600): Removing VM from VirtualBox.
17:51:13 (2110600): called boinc_finish(0)

</stderr_txt>
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