Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-01-28 15:52:37 (12748): Detected: vboxwrapper 26206
2025-01-28 15:52:37 (12748): Detected: BOINC client v8.0.2
2025-01-28 15:52:37 (12748): Detected: VirtualBox VboxManage Interface (Version: 7.0.14)
2025-01-28 15:52:37 (12748): Successfully copied 'init_data.xml' to the shared directory.
2025-01-28 15:52:38 (12748): Create VM. (boinc_c1630820665bc4bb, slot#3)
2025-01-28 15:52:38 (12748): Setting Memory Size for VM. (6600MB)
2025-01-28 15:52:39 (12748): Setting CPU Count for VM. (4)
2025-01-28 15:52:39 (12748): Setting Chipset Options for VM.
2025-01-28 15:52:39 (12748): Setting Graphics Controller Options for VM.
2025-01-28 15:52:40 (12748): Setting Boot Options for VM.
2025-01-28 15:52:40 (12748): Setting Network Configuration for NAT.
2025-01-28 15:52:40 (12748): Enabling VM Network Access.
2025-01-28 15:52:40 (12748): Disabling USB Support for VM.
2025-01-28 15:52:41 (12748): Disabling COM Port Support for VM.
2025-01-28 15:52:41 (12748): Disabling LPT Port Support for VM.
2025-01-28 15:52:41 (12748): Disabling Audio Support for VM.
2025-01-28 15:52:41 (12748): Disabling Clipboard Support for VM.
2025-01-28 15:52:42 (12748): Disabling Drag and Drop Support for VM.
2025-01-28 15:52:42 (12748): Adding storage controller(s) to VM.
2025-01-28 15:52:42 (12748): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-01-28 15:52:45 (12748): Adding VirtualBox Guest Additions to VM.
2025-01-28 15:52:45 (12748): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-01-28 15:52:45 (12748): forwarding host port 49445 to guest port 80
2025-01-28 15:52:46 (12748): Enabling remote desktop for VM.
2025-01-28 15:52:46 (12748): Enabling shared directory for VM.
2025-01-28 15:52:47 (12748): Starting VM using VBoxManage interface. (boinc_c1630820665bc4bb, slot#3)
2025-01-28 15:52:56 (12748): Successfully started VM. (PID = '24356')
2025-01-28 15:52:56 (12748): Reporting VM Process ID to BOINC.
2025-01-28 15:52:56 (12748): Guest Log: BIOS: VirtualBox 7.0.14
2025-01-28 15:52:56 (12748): Guest Log: CPUID EDX: 0x178bfbff
2025-01-28 15:52:56 (12748): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-01-28 15:52:56 (12748): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-01-28 15:52:56 (12748): VM state change detected. (old = 'poweredoff', new = 'running')
2025-01-28 15:52:56 (12748): Detected: Web Application Enabled (http://localhost:49445)
2025-01-28 15:52:56 (12748): Detected: Remote Desktop Enabled (localhost:49466)
2025-01-28 15:52:56 (12748): Preference change detected
2025-01-28 15:52:56 (12748): Setting CPU throttle for VM. (100%)
2025-01-28 15:52:56 (12748): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-01-28 15:52:58 (12748): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-01-28 15:52:58 (12748): Guest Log: BIOS: Booting from Hard Disk...
2025-01-28 15:53:01 (12748): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-01-28 15:53:01 (12748): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-01-28 15:53:01 (12748): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-01-28 15:53:07 (12748): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-01-28 15:53:07 (12748): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-01-28 15:53:13 (12748): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-01-28 15:53:13 (12748): Guest Log: 00:00:00.000184 main     Log opened 2025-01-28T15:53:11.373108000Z
2025-01-28 15:53:13 (12748): Guest Log: 00:00:00.000292 main     OS Product: Linux
2025-01-28 15:53:13 (12748): Guest Log: 00:00:00.000321 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-01-28 15:53:13 (12748): Guest Log: 00:00:00.000345 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-01-28 15:53:13 (12748): Guest Log: 00:00:00.000369 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-01-28 15:53:13 (12748): Guest Log: 00:00:00.000370 main     Process ID: 1372
2025-01-28 15:53:13 (12748): Guest Log: 00:00:00.000370 main     Package type: LINUX_64BITS_GENERIC
2025-01-28 15:53:13 (12748): Guest Log: 00:00:00.001588 main     5.2.32 r132073 started. Verbose level = 0
2025-01-28 15:53:13 (12748): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-01-28 15:53:13 (12748): Guest Log: [INFO] Mounting shared directory
2025-01-28 15:53:13 (12748): Guest Log: [INFO] Checking for init_data.xml
2025-01-28 15:53:16 (12748): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-01-28 15:53:16 (12748): Guest Log: [INFO] Detected branch: prod
2025-01-28 15:53:16 (12748): Guest Log: This is the prod version of the ATLAS job wrapper
2025-01-28 15:53:16 (12748): Guest Log: Copying input files
2025-01-28 15:53:18 (12748): Guest Log: Copied input files into RunAtlas.
2025-01-28 15:53:18 (12748): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.130:3128 - will set in /etc/cvmfs/default.local
2025-01-28 15:53:33 (12748): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-01-28 15:53:33 (12748): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-01-28 15:53:33 (12748): Guest Log: 2.6.3.0 1647 0 31596 142057 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.130:3128 1
2025-01-28 15:53:34 (12748): Guest Log: copied the webapp to /var/www
2025-01-28 15:53:34 (12748): Guest Log: ATHENA_PROC_NUMBER=4
2025-01-28 15:53:34 (12748): Guest Log: ATHENA_CORE_NUMBER=4
2025-01-28 15:53:34 (12748): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-01-28 15:53:34 (12748): Guest Log:  *** Starting ATLAS job. (PandaID=6493469038 taskID=43078919) ***
2025-01-28 17:33:00 (12748): Status Report: Elapsed Time: '6000.000000'
2025-01-28 17:33:00 (12748): Status Report: CPU Time: '21416.203125'
2025-01-28 19:13:05 (12748): Status Report: Elapsed Time: '12000.000000'
2025-01-28 19:13:05 (12748): Status Report: CPU Time: '44914.046875'
2025-01-28 20:53:09 (12748): Status Report: Elapsed Time: '18000.000000'
2025-01-28 20:53:09 (12748): Status Report: CPU Time: '68454.031250'
2025-01-28 21:21:34 (12748): Preference change detected
2025-01-28 21:21:34 (12748): Setting CPU throttle for VM. (100%)
2025-01-28 21:21:35 (12748): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-01-28 22:33:14 (12748): Status Report: Elapsed Time: '24000.000000'
2025-01-28 22:33:14 (12748): Status Report: CPU Time: '92170.656250'
2025-01-28 22:41:19 (12748): Guest Log:  *** Job finished ***
2025-01-28 22:41:19 (12748): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:08,198 | INFO     | [payload] execute_payloads thread has finished
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:08,421 | INFO     | [data] copytool_out thread has finished
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:11,987 | INFO     | [data] queue_monitor thread has finished
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:12,401 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140604492105536)>', '<ExcThread(monitor, started 140603446773504)>']
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:12,838 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:12,838 | INFO     | [monitor] control thread has ended
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,405 | INFO     | all workflow threads have been joined
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,405 | INFO     | end of generic workflow (traces error code: 0)
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,406 | INFO     | traces error code: 0
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,406 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,514 [wrapper] ==== pilot stdout END ====
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,519 [wrapper] ==== wrapper stdout RESUME ====
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,524 [wrapper] pilotpid: 5976
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,530 [wrapper] Pilot exit status: 0
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,583 [wrapper] pandaids: 6493469038
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,613 [wrapper] cleanup supervisor_pilot  1845 5977
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,618 [wrapper] Test setup, not cleaning
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,628 [wrapper] apfmon messages muted
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,633 [wrapper] ==== wrapper stdout END ====
2025-01-28 22:41:19 (12748): Guest Log: 2025-01-28 22:41:17,638 [wrapper] ==== wrapper stderr END ====
2025-01-28 22:41:19 (12748): Guest Log:  *** Error codes and diagnostics ***
2025-01-28 22:41:19 (12748): Guest Log:     "exeErrorCode": 0,
2025-01-28 22:41:19 (12748): Guest Log:     "exeErrorDiag": "",
2025-01-28 22:41:19 (12748): Guest Log:     "pilotErrorCode": 0,
2025-01-28 22:41:19 (12748): Guest Log:     "pilotErrorDiag": "",
2025-01-28 22:41:19 (12748): Guest Log:  *** Listing of results directory ***
2025-01-28 22:41:20 (12748): Guest Log: total 328328
2025-01-28 22:41:20 (12748): Guest Log: -rw-r--r--. 1 atlas atlas    491065 Jan 28 08:39 pilot3.tar.gz
2025-01-28 22:41:20 (12748): Guest Log: -rw-r--r--. 1 atlas atlas      5652 Jan 28 08:40 queuedata.json
2025-01-28 22:41:20 (12748): Guest Log: -rwx------. 1 atlas atlas     34924 Jan 28 08:41 runpilot2-wrapper.sh
2025-01-28 22:41:20 (12748): Guest Log: -rwxr-xr-x. 1 atlas atlas      9232 Jan 28 15:53 init_data.xml
2025-01-28 22:41:20 (12748): Guest Log: -rwxr-xr-x. 1 atlas atlas    503530 Jan 28 15:53 input.tar.gz
2025-01-28 22:41:20 (12748): Guest Log: -rwxr-xr-x. 1 atlas atlas     17569 Jan 28 15:53 start_atlas.sh
2025-01-28 22:41:20 (12748): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 28 15:53 EVNT.43078917._000001.pool.root.1 -> /data/./ATLAS.root_0
2025-01-28 22:41:20 (12748): Guest Log: -rw-r--r--. 1 atlas atlas      2540 Jan 28 15:53 pandaJob.out
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas       460 Jan 28 15:53 setup.sh.local
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas    968269 Jan 28 15:53 agis_schedconf.cvmfs.json
2025-01-28 22:41:20 (12748): Guest Log: drwx------. 4 atlas atlas      4096 Jan 28 15:54 pilot3
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas 326797228 Jan 28 22:40 HITS.43078919._000171.pool.root.1
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas        95 Jan 28 22:40 pilot_heartbeat.json
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas      1033 Jan 28 22:40 memory_monitor_summary.json
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas   1580206 Jan 28 22:40 agis_ddmendpoints.agis.ALL.json
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas    440554 Jan 28 22:40 log.43078919._000171.job.log.tgz.1
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas      7734 Jan 28 22:41 heartbeat.json
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas      4591 Jan 28 22:41 pilotlog.txt
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas   2412377 Jan 28 22:41 log.43078919._000171.job.log.1
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas       357 Jan 28 22:41 output.list
2025-01-28 22:41:20 (12748): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 28 22:41 runtime_log
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas   2867200 Jan 28 22:41 result.tar.gz
2025-01-28 22:41:20 (12748): Guest Log: -rw-r--r--. 1 atlas atlas     11296 Jan 28 22:41 runtime_log.err
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas       656 Jan 28 22:41 Pz3LDmeLww6n9Rq4apOajLDm4fhM0noT9bVoFjIUDmmPFKDmir5wIn.diag
2025-01-28 22:41:20 (12748): Guest Log: Looking for outputfile HITS.43078919._000171.pool.root.1
2025-01-28 22:41:20 (12748): Guest Log: HITS file was successfully produced
2025-01-28 22:41:20 (12748): Guest Log: -rw-------. 1 atlas atlas 326797228 Jan 28 22:40 /home/atlas/RunAtlas/HITS.43078919._000171.pool.root.1
2025-01-28 22:41:21 (12748): Guest Log: Successfully finished the ATLAS job!
2025-01-28 22:41:21 (12748): Guest Log: Copying the results back to the shared directory!
2025-01-28 22:41:21 (12748): Guest Log:  *** Contents of shared directory: ***
2025-01-28 22:41:21 (12748): Guest Log: total 655036
2025-01-28 22:41:21 (12748): Guest Log: -rwxrwxrwx. 1 root root 340550988 Jan 28 15:52 ATLAS.root_0
2025-01-28 22:41:21 (12748): Guest Log: -rwxrwxrwx. 1 root root 326797228 Jan 28 22:41 HITS.pool.root.1
2025-01-28 22:41:21 (12748): Guest Log: -rwxrwxrwx. 1 root root      9232 Jan 28 15:52 init_data.xml
2025-01-28 22:41:21 (12748): Guest Log: -rwxrwxrwx. 1 root root    503530 Jan 28 09:05 input.tar.gz
2025-01-28 22:41:21 (12748): Guest Log: -rwxrwxrwx. 1 root root   2867200 Jan 28 22:41 result.tar.gz
2025-01-28 22:41:21 (12748): Guest Log: -rwxrwxrwx. 1 root root     17569 Jan 28 09:05 start_atlas.sh
2025-01-28 22:41:21 (12748): Guest Log:  *** Success! Shutting down the machine. ***
2025-01-28 22:41:21 (12748): VM Completion File Detected.
2025-01-28 22:41:21 (12748): Powering off VM.
2025-01-28 22:41:22 (12748): Successfully stopped VM.
2025-01-28 22:41:22 (12748): Deregistering VM. (boinc_c1630820665bc4bb, slot#3)
2025-01-28 22:41:22 (12748): Removing network bandwidth throttle group from VM.
2025-01-28 22:41:22 (12748): Removing VM from VirtualBox.
22:41:28 (12748): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN