Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-01-28 18:00:39 (2640): Detected: vboxwrapper 26206
2025-01-28 18:00:39 (2640): Detected: BOINC client v8.0.4
2025-01-28 18:00:40 (2640): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2025-01-28 18:00:40 (2640): Successfully copied 'init_data.xml' to the shared directory.
2025-01-28 18:00:41 (2640): Create VM. (boinc_8c1d88ce761a0357, slot#0)
2025-01-28 18:00:41 (2640): Setting Memory Size for VM. (4200MB)
2025-01-28 18:00:41 (2640): Setting CPU Count for VM. (2)
2025-01-28 18:00:42 (2640): Setting Chipset Options for VM.
2025-01-28 18:00:42 (2640): Setting Graphics Controller Options for VM.
2025-01-28 18:00:42 (2640): Setting Boot Options for VM.
2025-01-28 18:00:42 (2640): Setting Network Configuration for NAT.
2025-01-28 18:00:43 (2640): Enabling VM Network Access.
2025-01-28 18:00:43 (2640): Disabling USB Support for VM.
2025-01-28 18:00:43 (2640): Disabling COM Port Support for VM.
2025-01-28 18:00:43 (2640): Disabling LPT Port Support for VM.
2025-01-28 18:00:44 (2640): Disabling Audio Support for VM.
2025-01-28 18:00:44 (2640): Disabling Clipboard Support for VM.
2025-01-28 18:00:44 (2640): Disabling Drag and Drop Support for VM.
2025-01-28 18:00:44 (2640): Adding storage controller(s) to VM.
2025-01-28 18:00:45 (2640): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2025-01-28 18:00:48 (2640): Adding VirtualBox Guest Additions to VM.
2025-01-28 18:00:48 (2640): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-01-28 18:00:48 (2640): forwarding host port 52748 to guest port 80
2025-01-28 18:00:48 (2640): Enabling remote desktop for VM.
2025-01-28 18:00:49 (2640): Required extension pack not installed, remote desktop not enabled.
2025-01-28 18:00:49 (2640): Enabling shared directory for VM.
2025-01-28 18:00:49 (2640): Starting VM using VBoxManage interface. (boinc_8c1d88ce761a0357, slot#0)
2025-01-28 18:00:54 (2640): Successfully started VM. (PID = '8548')
2025-01-28 18:00:54 (2640): Reporting VM Process ID to BOINC.
2025-01-28 18:00:54 (2640): Guest Log: BIOS: VirtualBox 7.1.4
2025-01-28 18:00:54 (2640): Guest Log: CPUID EDX: 0x178bfbff
2025-01-28 18:00:54 (2640): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-01-28 18:00:54 (2640): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-01-28 18:00:54 (2640): VM state change detected. (old = 'poweredoff', new = 'running')
2025-01-28 18:00:54 (2640): Detected: Web Application Enabled (http://localhost:52748)
2025-01-28 18:00:54 (2640): Preference change detected
2025-01-28 18:00:54 (2640): Setting CPU throttle for VM. (100%)
2025-01-28 18:00:54 (2640): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 120 seconds) or (Vbox_job.xml: 900 seconds))
2025-01-28 18:00:56 (2640): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-01-28 18:00:56 (2640): Guest Log: BIOS: Booting from Hard Disk...
2025-01-28 18:00:59 (2640): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-01-28 18:00:59 (2640): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-01-28 18:00:59 (2640): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-01-28 18:01:03 (2640): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-01-28 18:01:03 (2640): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-01-28 18:01:09 (2640): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-01-28 18:01:09 (2640): Guest Log: 00:00:00.000134 main     Log opened 2025-01-28T18:01:07.004130000Z
2025-01-28 18:01:09 (2640): Guest Log: 00:00:00.000222 main     OS Product: Linux
2025-01-28 18:01:09 (2640): Guest Log: 00:00:00.000250 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-01-28 18:01:09 (2640): Guest Log: 00:00:00.000271 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-01-28 18:01:09 (2640): Guest Log: 00:00:00.000293 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-01-28 18:01:09 (2640): Guest Log: 00:00:00.000294 main     Process ID: 1269
2025-01-28 18:01:09 (2640): Guest Log: 00:00:00.000294 main     Package type: LINUX_64BITS_GENERIC
2025-01-28 18:01:09 (2640): Guest Log: 00:00:00.001362 main     5.2.32 r132073 started. Verbose level = 0
2025-01-28 18:01:09 (2640): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-01-28 18:01:09 (2640): Guest Log: [INFO] Mounting shared directory
2025-01-28 18:01:09 (2640): Guest Log: [INFO] Checking for init_data.xml
2025-01-28 18:01:19 (2640): Guest Log: 00:00:10.004839 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 166 930 000ns (GuestNow=1 738 083 678 840 922 000 ns GuestLast=1 738 087 267 007 852 000 ns fSetTimeLastLoop=true )
2025-01-28 18:01:20 (2640): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-01-28 18:01:20 (2640): Guest Log: [INFO] Detected branch: prod
2025-01-28 18:01:22 (2640): Guest Log: This is the prod version of the ATLAS job wrapper
2025-01-28 18:01:22 (2640): Guest Log: Copying input files
2025-01-28 18:01:23 (2640): Guest Log: Copied input files into RunAtlas.
2025-01-28 18:01:23 (2640): Guest Log: Detected user-configured HTTP proxy at http://192.168.5.5:3128 - will set in /etc/cvmfs/default.local
2025-01-28 18:01:37 (2640): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-01-28 18:01:37 (2640): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-01-28 18:01:37 (2640): Guest Log: 2.6.3.0 1547 0 31540 142061 4 1 3117296 4096000 0 65024 0 0 n/a 0 0 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.5.5:3128 1
2025-01-28 18:01:37 (2640): Guest Log: copied the webapp to /var/www
2025-01-28 18:01:37 (2640): Guest Log: ATHENA_PROC_NUMBER=2
2025-01-28 18:01:37 (2640): Guest Log: ATHENA_CORE_NUMBER=2
2025-01-28 18:01:37 (2640): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-01-28 18:01:37 (2640): Guest Log:  *** Starting ATLAS job. (PandaID=6493461450 taskID=43078953) ***
2025-01-28 19:40:58 (2640): Status Report: Elapsed Time: '6000.000000'
2025-01-28 19:40:58 (2640): Status Report: CPU Time: '7744.718750'
2025-01-28 21:21:03 (2640): Status Report: Elapsed Time: '12000.000000'
2025-01-28 21:21:03 (2640): Status Report: CPU Time: '19742.437500'
2025-01-28 23:01:07 (2640): Status Report: Elapsed Time: '18000.000000'
2025-01-28 23:01:07 (2640): Status Report: CPU Time: '31740.156250'
2025-01-29 00:41:11 (2640): Status Report: Elapsed Time: '24000.000000'
2025-01-29 00:41:11 (2640): Status Report: CPU Time: '43729.625000'
2025-01-29 02:21:16 (2640): Status Report: Elapsed Time: '30000.000000'
2025-01-29 02:21:16 (2640): Status Report: CPU Time: '55719.171875'
2025-01-29 02:42:40 (2640): VM state change detected. (old = 'running', new = 'paused')
2025-01-29 03:22:57 (2640): VM state change detected. (old = 'paused', new = 'running')
2025-01-29 03:23:04 (2640): Guest Log: 08:41:37.946120 timesync vgsvcTimeSyncWorker: Radical host time change: 2 427 617 000 000ns (HostNow=1 738 117 384 385 000 000 ns HostLast=1 738 114 956 768 000 000 ns)
2025-01-29 03:23:14 (2640): Guest Log: 08:41:47.949599 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 427 606 721 000ns (GuestNow=1 738 117 394 388 522 000 ns GuestLast=1 738 114 966 781 801 000 ns fSetTimeLastLoop=true )
2025-01-29 04:41:39 (2640): Status Report: Elapsed Time: '36000.000000'
2025-01-29 04:41:39 (2640): Status Report: CPU Time: '67704.031250'
2025-01-29 05:23:35 (2640): VM state change detected. (old = 'running', new = 'paused')
2025-01-29 05:58:13 (2640): VM state change detected. (old = 'paused', new = 'running')
2025-01-29 05:58:14 (2640): Guest Log: 10:42:09.756906 timesync vgsvcTimeSyncWorker: Radical host time change: 2 087 426 000 000ns (HostNow=1 738 126 693 585 000 000 ns HostLast=1 738 124 606 159 000 000 ns)
2025-01-29 05:58:24 (2640): Guest Log: 10:42:19.763581 timesync vgsvcTimeSyncWorker: Radical guest time change: 2 087 396 149 000ns (GuestNow=1 738 126 703 591 715 000 ns GuestLast=1 738 124 616 195 566 000 ns fSetTimeLastLoop=true )
2025-01-29 06:10:07 (2640): Guest Log:  *** Job finished ***
2025-01-29 06:10:07 (2640): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:09:55,862 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140610868614976)>', '<ExcThread(queue_monitor, started 140609889224448)>']
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:09:57,864 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140610868614976)>', '<ExcThread(queue_monitor, started 140609889224448)>']
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:09:59,866 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140610868614976)>', '<ExcThread(queue_monitor, started 140609889224448)>']
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:01,590 | INFO     | waiting for thread to finish: ['<_MainThread(MainThread, started 140610868614976)>', '<ExcThread(queue_monitor, started 140609889224448)>']
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:01,591 | INFO     | [job] queue monitor thread has finished
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:01,870 | INFO     | caller=run is remaining thread - safe to abort (names=['<_MainThread(MainThread, started 140610868614976)>'])
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:06,874 | INFO     | all workflow threads have been joined
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:06,875 | INFO     | end of generic workflow (traces error code: 0)
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:06,875 | INFO     | traces error code: 0
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:06,875 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:06,964 [wrapper] ==== pilot stdout END ====
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:06,967 [wrapper] ==== wrapper stdout RESUME ====
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:06,970 [wrapper] pilotpid: 5999
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:06,973 [wrapper] Pilot exit status: 0
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:07,269 [wrapper] pandaids: 6493461450
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:07,300 [wrapper] cleanup supervisor_pilot 26578 6000
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:07,304 [wrapper] Test setup, not cleaning
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:07,311 [wrapper] apfmon messages muted
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:07,315 [wrapper] ==== wrapper stdout END ====
2025-01-29 06:10:07 (2640): Guest Log: 2025-01-29 05:10:07,318 [wrapper] ==== wrapper stderr END ====
2025-01-29 06:10:07 (2640): Guest Log:  *** Error codes and diagnostics ***
2025-01-29 06:10:07 (2640): Guest Log:  *** Listing of results directory ***
2025-01-29 06:10:07 (2640): Guest Log: total 18848
2025-01-29 06:10:07 (2640): Guest Log: -rwx------. 1 atlas atlas   34924 Jan 28 08:35 runpilot2-wrapper.sh
2025-01-29 06:10:07 (2640): Guest Log: -rw-r--r--. 1 atlas atlas    5652 Jan 28 08:35 queuedata.json
2025-01-29 06:10:07 (2640): Guest Log: -rw-r--r--. 1 atlas atlas  491065 Jan 28 08:35 pilot3.tar.gz
2025-01-29 06:10:07 (2640): Guest Log: -rwxr-xr-x. 1 atlas atlas    9218 Jan 28 17:01 init_data.xml
2025-01-29 06:10:07 (2640): Guest Log: -rwxr-xr-x. 1 atlas atlas  503532 Jan 28 17:01 input.tar.gz
2025-01-29 06:10:07 (2640): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Jan 28 17:01 start_atlas.sh
2025-01-29 06:10:07 (2640): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Jan 28 17:01 EVNT.43078950._000001.pool.root.1 -> /data/./ATLAS.root_0
2025-01-29 06:10:07 (2640): Guest Log: -rw-r--r--. 1 atlas atlas    2606 Jan 28 17:01 pandaJob.out
2025-01-29 06:10:07 (2640): Guest Log: -rw-------. 1 atlas atlas     458 Jan 28 17:02 setup.sh.local
2025-01-29 06:10:07 (2640): Guest Log: -rw-------. 1 atlas atlas  968248 Jan 28 17:12 agis_schedconf.cvmfs.json
2025-01-29 06:10:07 (2640): Guest Log: -rw-------. 1 atlas atlas 1580206 Jan 28 17:12 agis_ddmendpoints.agis.ALL.json
2025-01-29 06:10:07 (2640): Guest Log: drwx------. 4 atlas atlas    4096 Jan 28 17:13 pilot3
2025-01-29 06:10:07 (2640): Guest Log: -rw-------. 1 atlas atlas     905 Jan 29 04:59 heartbeat.json
2025-01-29 06:10:07 (2640): Guest Log: -rw-------. 1 atlas atlas      97 Jan 29 05:09 pilot_heartbeat.json
2025-01-29 06:10:07 (2640): Guest Log: drwxrwx---. 2 atlas atlas    4096 Jan 29 05:09 PanDA_Pilot-6493461450
2025-01-29 06:10:07 (2640): Guest Log: -rw-------. 1 atlas atlas    1028 Jan 29 05:09 memory_monitor_summary.json
2025-01-29 06:10:07 (2640): Guest Log: -rw-------. 1 atlas atlas 5189932 Jan 29 05:10 pilotlog.txt
2025-01-29 06:10:07 (2640): Guest Log: -rw-------. 1 atlas atlas 5206116 Jan 29 05:10 log.43078953._000001.job.log.1
2025-01-29 06:10:07 (2640): Guest Log: -rw-r--r--. 1 atlas atlas     571 Jan 29 05:10 runtime_log
2025-01-29 06:10:07 (2640): Guest Log: -rw-------. 1 atlas atlas 5212160 Jan 29 05:10 result.tar.gz
2025-01-29 06:10:07 (2640): Guest Log: -rw-r--r--. 1 atlas atlas   10598 Jan 29 05:10 runtime_log.err
2025-01-29 06:10:07 (2640): Guest Log: -rw-------. 1 atlas atlas     646 Jan 29 05:10 mqdNDm8Eww6n9Rq4apOajLDm4fhM0noT9bVoFjIUDm0KFKDmn7v3Lo.diag
2025-01-29 06:10:07 (2640): Guest Log: Looking for outputfile HITS.43078953._000001.pool.root.1
2025-01-29 06:10:07 (2640): Guest Log: No HITS file was produced
2025-01-29 06:10:07 (2640): Guest Log: Successfully finished the ATLAS job!
2025-01-29 06:10:07 (2640): Guest Log: Copying the results back to the shared directory!
2025-01-29 06:10:07 (2640): Guest Log:  *** Contents of shared directory: ***
2025-01-29 06:10:07 (2640): Guest Log: total 326056
2025-01-29 06:10:07 (2640): Guest Log: -rwxrwxrwx. 1 root root 328128691 Jan 28 17:00 ATLAS.root_0
2025-01-29 06:10:07 (2640): Guest Log: -rwxrwxrwx. 1 root root      9218 Jan 28 17:00 init_data.xml
2025-01-29 06:10:07 (2640): Guest Log: -rwxrwxrwx. 1 root root    503532 Jan 28 08:35 input.tar.gz
2025-01-29 06:10:07 (2640): Guest Log: -rwxrwxrwx. 1 root root   5212160 Jan 29 05:10 result.tar.gz
2025-01-29 06:10:07 (2640): Guest Log: -rwxrwxrwx. 1 root root     17569 Jan 28 08:35 start_atlas.sh
2025-01-29 06:10:07 (2640): Guest Log:  *** Success! Shutting down the machine. ***
2025-01-29 06:10:07 (2640): VM Completion File Detected.
2025-01-29 06:10:07 (2640): Powering off VM.
2025-01-29 06:10:08 (2640): Successfully stopped VM.
2025-01-29 06:10:08 (2640): Deregistering VM. (boinc_8c1d88ce761a0357, slot#0)
2025-01-29 06:10:08 (2640): Removing network bandwidth throttle group from VM.
2025-01-29 06:10:08 (2640): Removing VM from VirtualBox.
06:10:14 (2640): called boinc_finish(0)

</stderr_txt>
]]>

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