Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
09:30:12 (43086): wrapper (7.7.26015): starting
09:30:12 (43086): wrapper: running run_atlas (--nthreads 2)
[2024-12-16 09:30:12] Arguments: --nthreads 2
[2024-12-16 09:30:12] Threads: 2
[2024-12-16 09:30:12] Checking for CVMFS
[2024-12-16 09:30:12] Probing /cvmfs/atlas.cern.ch... OK
[2024-12-16 09:30:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-12-16 09:30:13] Running cvmfs_config stat atlas.cern.ch
[2024-12-16 09:30:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-12-16 09:30:13] 2.11.5.0 6557 6854 61452 140507 3 88 4497403 6144001 1419 130560 4 28323029 99.994 1001576 1339 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2024-12-16 09:30:13] CVMFS is ok
[2024-12-16 09:30:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-12-16 09:30:13] Small home clusters do not require a local http proxy but it is suggested if
[2024-12-16 09:30:13] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-12-16 09:30:13] Further information can be found at the LHC@home message board.
[2024-12-16 09:30:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-12-16 09:30:13] Checking for apptainer binary...
[2024-12-16 09:30:13] apptainer is not installed, using version from CVMFS
[2024-12-16 09:30:13] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-12-16 09:30:13] k8plus
[2024-12-16 09:30:13] apptainer works
[2024-12-16 09:30:13] Set ATHENA_PROC_NUMBER=2
[2024-12-16 09:30:13] Set ATHENA_CORE_NUMBER=2
[2024-12-16 09:30:13] Starting ATLAS job with PandaID=6443991181
[2024-12-16 09:30:13] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-12-16 11:08:21]  *** The last 200 lines of the pilot log: ***
[2024-12-16 11:08:21]  protocol_id=None
[2024-12-16 11:08:21]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-12-16 11:08:21]  replicas=None
[2024-12-16 11:08:21]  scope=mc16_13TeV
[2024-12-16 11:08:21]  status=None
[2024-12-16 11:08:21]  status_code=0
[2024-12-16 11:08:21]  storage_token=
[2024-12-16 11:08:21]  surl=/var/lib/boinc-client/slots/0/PanDA_Pilot-6443991181/log.42386625._033110.job.log.tgz.1
[2024-12-16 11:08:21]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/3a/08/log.42386625._033110.job.log.tgz.1
[2024-12-16 11:08:21]  workdir=None
[2024-12-16 11:08:21] ]
[2024-12-16 11:08:21] 2024-12-16 19:07:53,993 | INFO     | transferring file log.42386625._033110.job.log.tgz.1 from /var/lib/boinc-client/slots/0/PanDA_Pilot-6443991181/log.42386625._033110.job.log.tgz.1 to /var/lib/boinc
[2024-12-16 11:08:21] 2024-12-16 19:07:53,993 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/0/PanDA_Pilot-6443991181/log.42386625._033110.job.log.tgz.1 /var/lib/boinc-client/slots/0/log.423866
[2024-12-16 11:08:21] 2024-12-16 19:07:54,020 | INFO     | adding to output.list: log.42386625._033110.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/3a/08/log.42386625._033110.job.log.tgz.
[2024-12-16 11:08:21] 2024-12-16 19:07:54,020 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2024-12-16 11:08:21] 2024-12-16 19:07:54,020 | INFO     | summary of transferred files:
[2024-12-16 11:08:21] 2024-12-16 19:07:54,020 | INFO     |  -- lfn=log.42386625._033110.job.log.tgz.1, status_code=0, status=transferred
[2024-12-16 11:08:21] 2024-12-16 19:07:54,021 | INFO     | stage-out finished correctly
[2024-12-16 11:08:21] 2024-12-16 19:07:57,097 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-12-16 11:08:21] 2024-12-16 19:07:58,679 | WARNING  | process 53488 can no longer be monitored (due to stat problems) - aborting
[2024-12-16 11:08:21] 2024-12-16 19:07:58,679 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6443991181/memory_monitor_summary.json (trf name=prmon)
[2024-12-16 11:08:21] 2024-12-16 19:07:58,762 | INFO     | number of running child processes to parent process 53488: 1
[2024-12-16 11:08:21] 2024-12-16 19:07:58,762 | INFO     | maximum number of monitored processes: 8
[2024-12-16 11:08:21] 2024-12-16 19:07:59,615 | INFO     | job 6443991181 has state=finished
[2024-12-16 11:08:21] 2024-12-16 19:07:59,615 | INFO     | preparing for final server update for job 6443991181 in state='finished'
[2024-12-16 11:08:21] 2024-12-16 19:07:59,616 | INFO     | this job has now completed (state=finished)
[2024-12-16 11:08:21] 2024-12-16 19:07:59,616 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-12-16 11:08:21] 2024-12-16 19:07:59,616 | INFO     | log transfer has been attempted: DONE
[2024-12-16 11:08:21] 2024-12-16 19:07:59,616 | INFO     | job 6443991181 has finished - writing final server update
[2024-12-16 11:08:21] 2024-12-16 19:07:59,616 | INFO     | total number of processed events: 50 (read)
[2024-12-16 11:08:21] 2024-12-16 19:07:59,618 | INFO     | executing command: lscpu
[2024-12-16 11:08:21] 2024-12-16 19:07:59,688 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-12-16 11:08:21] 2024-12-16 19:08:01,265 | INFO     | monitor loop #445: job 0:6443991181 is in state 'finished'
[2024-12-16 11:08:21] 2024-12-16 19:08:01,265 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-12-16 11:08:21] 2024-12-16 19:08:03,768 | INFO     | monitor loop #446: job 0:6443991181 is in state 'finished'
[2024-12-16 11:08:21] 2024-12-16 19:08:03,768 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-12-16 11:08:21] 2024-12-16 19:08:06,271 | INFO     | monitor loop #447: job 0:6443991181 is in state 'finished'
[2024-12-16 11:08:21] 2024-12-16 19:08:06,271 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-12-16 11:08:21] 2024-12-16 19:08:08,511 | INFO     | CPU arch script returned: x86-64-v4
[2024-12-16 11:08:21] 2024-12-16 19:08:08,512 | INFO     | using path: /var/lib/boinc-client/slots/0/PanDA_Pilot-6443991181/memory_monitor_summary.json (trf name=prmon)
[2024-12-16 11:08:21] 2024-12-16 19:08:08,512 | INFO     | extracted standard info from prmon json
[2024-12-16 11:08:21] 2024-12-16 19:08:08,512 | INFO     | extracted standard memory fields from prmon json
[2024-12-16 11:08:21] 2024-12-16 19:08:08,512 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-12-16 11:08:21] 2024-12-16 19:08:08,513 | INFO     | fitting pss+swap vs Time
[2024-12-16 11:08:21] 2024-12-16 19:08:08,513 | INFO     | model: linear, x: [1734370553.0, 1734370614.0, 1734370675.0, 1734370736.0, 1734370797.0, 1734370858.0, 1734370919.0, 1734370980.0, 1734371041.0, 1734371102.0, 1734
[2024-12-16 11:08:21] 2024-12-16 19:08:08,513 | INFO     | sum of square deviations: 218571540.0
[2024-12-16 11:08:21] 2024-12-16 19:08:08,513 | INFO     | sum of deviations: 27641225728.000023
[2024-12-16 11:08:21] 2024-12-16 19:08:08,513 | INFO     | mean x: 1734373237.0
[2024-12-16 11:08:21] 2024-12-16 19:08:08,513 | INFO     | mean y: 1540520.168539326
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | -- intersect: -219332605821.66113
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | intersect: -219332605821.66113
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | chi2: 5.739077084153086
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | -- intersect: -219332605821.66113
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | current memory leak: 126.46 B/s (using 89 data points, chi2=5.74)
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | ..............................
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | . Timing measurements:
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | . get job = 0 s
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | . initial setup = 3 s
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | . payload setup = 5 s
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | . stage-in = 0 s
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | . payload execution = 5824 s
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | . stage-out = 1 s
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | . log creation = 0 s
[2024-12-16 11:08:21] 2024-12-16 19:08:08,514 | INFO     | ..............................
[2024-12-16 11:08:21] 2024-12-16 19:08:08,559 | INFO     | 
[2024-12-16 11:08:21] 2024-12-16 19:08:08,559 | INFO     | job summary report
[2024-12-16 11:08:21] 2024-12-16 19:08:08,559 | INFO     | --------------------------------------------------
[2024-12-16 11:08:21] 2024-12-16 19:08:08,559 | INFO     | PanDA job id: 6443991181
[2024-12-16 11:08:21] 2024-12-16 19:08:08,559 | INFO     | task id: 42386625
[2024-12-16 11:08:21] 2024-12-16 19:08:08,559 | INFO     | errors: (none)
[2024-12-16 11:08:21] 2024-12-16 19:08:08,559 | INFO     | status: LOG_TRANSFER = DONE 
[2024-12-16 11:08:21] 2024-12-16 19:08:08,559 | INFO     | pilot state: finished 
[2024-12-16 11:08:21] 2024-12-16 19:08:08,559 | INFO     | transexitcode: 0
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | exeerrorcode: 0
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | exeerrordiag: 
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | exitcode: 0
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | exitmsg: OK
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | cpuconsumptiontime: 7022 s
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | nevents: 50
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | neventsw: 0
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | pid: 53488
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | pgrp: 53488
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | corecount: 2
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | event service: False
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | sizes: {0: 2352502, 4: 2352708, 11: 2352736, 5833: 2380046, 5835: 2388997, 5838: 2389053, 5850: 2389403}
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | --------------------------------------------------
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | 
[2024-12-16 11:08:21] 2024-12-16 19:08:08,560 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/0
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue jobs had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue payloads had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue data_in had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue data_out had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,610 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,611 | INFO     | queue completed_jobids has 1 job(s)
[2024-12-16 11:08:21] 2024-12-16 19:08:08,611 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,611 | INFO     | queue messages had 0 job(s) [purged]
[2024-12-16 11:08:21] 2024-12-16 19:08:08,611 | INFO     | job 6443991181 has completed (purged errors)
[2024-12-16 11:08:21] 2024-12-16 19:08:08,611 | INFO     | overall cleanup function is called
[2024-12-16 11:08:21] 2024-12-16 19:08:09,622 | INFO     | --- collectZombieJob: --- 10, [53488]
[2024-12-16 11:08:21] 2024-12-16 19:08:09,622 | INFO     | zombie collector waiting for pid 53488
[2024-12-16 11:08:21] 2024-12-16 19:08:09,622 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-12-16 11:08:21] 2024-12-16 19:08:09,622 | INFO     | collected zombie processes
[2024-12-16 11:08:21] 2024-12-16 19:08:09,622 | INFO     | will attempt to kill all subprocesses of pid=53488
[2024-12-16 11:08:21] 2024-12-16 19:08:09,714 | INFO     | process IDs to be killed: [53488] (in reverse order)
[2024-12-16 11:08:21] 2024-12-16 19:08:09,775 | WARNING  | found no corresponding commands to process id(s)
[2024-12-16 11:08:21] 2024-12-16 19:08:09,776 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-12-16 11:08:21] 2024-12-16 19:08:09,780 | INFO     | did not find any defunct processes belonging to 53488
[2024-12-16 11:08:21] 2024-12-16 19:08:09,782 | INFO     | did not find any defunct processes belonging to 53488
[2024-12-16 11:08:21] 2024-12-16 19:08:09,783 | INFO     | ready for new job
[2024-12-16 11:08:21] 2024-12-16 19:08:09,783 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-12-16 11:08:21] 2024-12-16 19:08:09,784 | INFO     | *************************************
[2024-12-16 11:08:21] 2024-12-16 19:08:09,785 | INFO     | ***  PanDA Pilot version 3.9.3.2  ***
[2024-12-16 11:08:21] 2024-12-16 19:08:09,785 | INFO     | *************************************
[2024-12-16 11:08:21] 2024-12-16 19:08:09,785 | INFO     | 
[2024-12-16 11:08:21] 2024-12-16 19:08:09,785 | INFO     | architecture information:
[2024-12-16 11:08:21] 2024-12-16 19:08:09,786 | INFO     | executing command: cat /etc/os-release
[2024-12-16 11:08:21] 2024-12-16 19:08:09,809 | INFO     | cat /etc/os-release:
[2024-12-16 11:08:21] NAME="CentOS Linux"
[2024-12-16 11:08:21] VERSION="7 (Core)"
[2024-12-16 11:08:21] ID="centos"
[2024-12-16 11:08:21] ID_LIKE="rhel fedora"
[2024-12-16 11:08:21] VERSION_ID="7"
[2024-12-16 11:08:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-12-16 11:08:21] ANSI_COLOR="0;31"
[2024-12-16 11:08:21] CPE_NAME="cpe:/o:centos:centos:7"
[2024-12-16 11:08:21] HOME_URL="https://www.centos.org/"
[2024-12-16 11:08:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-12-16 11:08:21] 
[2024-12-16 11:08:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-12-16 11:08:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-12-16 11:08:21] REDHAT_SUPPORT_PRODUCT="centos"
[2024-12-16 11:08:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-12-16 11:08:21] 
[2024-12-16 11:08:21] 2024-12-16 19:08:09,810 | INFO     | *************************************
[2024-12-16 11:08:21] 2024-12-16 19:08:10,312 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/0
[2024-12-16 11:08:21] 2024-12-16 19:08:10,342 | WARNING  | exception caught while trying to convert disk info: list index out of range
[2024-12-16 11:08:21] 2024-12-16 19:08:10,343 | WARNING  | exception caught while executing df: error code: 1301, message: An unknown pilot exception has occurred
[2024-12-16 11:08:21] stacktrace: Traceback (most recent call last):
[2024-12-16 11:08:21]   File "/var/lib/boinc-client/slots/0/pilot3/pilot/util/workernode.py", line 57, in get_local_disk_space
[2024-12-16 11:08:21]     disk = float(stdout.splitlines()[1].split()[3])
[2024-12-16 11:08:21] IndexError: list index out of range
[2024-12-16 11:08:21]  (ignoring)
[2024-12-16 11:08:21] 2024-12-16 19:08:10,343 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-12-16 11:08:21] 2024-12-16 19:08:10,343 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-12-16 11:08:21] 2024-12-16 19:08:10,347 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-12-16 11:08:21] 2024-12-16 19:08:10,348 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-12-16 11:08:21] 2024-12-16 19:08:10,348 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-12-16 11:08:21] 2024-12-16 19:08:10,348 | INFO     | aborting loop
[2024-12-16 11:08:21] 2024-12-16 19:08:10,678 | INFO     | found 0 job(s) in 20 queues
[2024-12-16 11:08:21] 2024-12-16 19:08:10,678 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-12-16 11:08:21] 2024-12-16 19:08:10,678 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-12-16 11:08:21] 2024-12-16 19:08:11,276 | INFO     | all job control threads have been joined
[2024-12-16 11:08:21] 2024-12-16 19:08:11,348 | INFO     | [job] retrieve thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:11,353 | INFO     | [job] queue monitor thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:11,353 | INFO     | [job] job monitor thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:11,363 | INFO     | all data control threads have been joined
[2024-12-16 11:08:21] 2024-12-16 19:08:11,583 | INFO     | all payload control threads have been joined
[2024-12-16 11:08:21] 2024-12-16 19:08:11,620 | INFO     | [data] copytool_in thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:12,133 | INFO     | [job] validate thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:12,134 | INFO     | [payload] validate_post thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:12,143 | INFO     | [job] create_data_payload thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:12,164 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-12-16 11:08:21] 2024-12-16 19:08:12,281 | INFO     | [job] control thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:12,357 | INFO     | [data] copytool_out thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:12,366 | INFO     | [payload] execute_payloads thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:12,368 | INFO     | [data] control thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:12,378 | INFO     | [payload] failed_post thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:12,439 | INFO     | [payload] validate_pre thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:12,586 | INFO     | [payload] control thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:12,635 | INFO     | [payload] run_realtimelog thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:16,170 | INFO     | [data] queue_monitor thread has finished
[2024-12-16 11:08:21] 2024-12-16 19:08:16,464 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140562376214336)>', '<ExcThread(monitor, started 140561809934080)>']
[2024-12-16 11:08:21] 2024-12-16 19:08:16,708 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-12-16 11:08:21] 2024-12-16 19:08:16,709 | INFO     | [monitor] control thread has ended
[2024-12-16 11:08:21] 2024-12-16 19:08:21,483 | INFO     | all workflow threads have been joined
[2024-12-16 11:08:21] 2024-12-16 19:08:21,483 | INFO     | end of generic workflow (traces error code: 0)
[2024-12-16 11:08:21] 2024-12-16 19:08:21,483 | INFO     | traces error code: 0
[2024-12-16 11:08:21] 2024-12-16 19:08:21,483 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-12-16 11:08:21] 2024-12-16 19:08:21,626 [wrapper] ==== pilot stdout END ====
[2024-12-16 11:08:21] 2024-12-16 19:08:21,629 [wrapper] ==== wrapper stdout RESUME ====
[2024-12-16 11:08:21] 2024-12-16 19:08:21,631 [wrapper] pilotpid: 46833
[2024-12-16 11:08:21] 2024-12-16 19:08:21,636 [wrapper] Pilot exit status: 0
[2024-12-16 11:08:21] 2024-12-16 19:08:21,668 [wrapper] pandaids: 6443991181
[2024-12-16 11:08:21] 2024-12-16 19:08:21,718 [wrapper] cleanup supervisor_pilot  150801 46834
[2024-12-16 11:08:21] 2024-12-16 19:08:21,722 [wrapper] Test setup, not cleaning
[2024-12-16 11:08:21] 2024-12-16 19:08:21,730 [wrapper] apfmon messages muted
[2024-12-16 11:08:21] 2024-12-16 19:08:21,732 [wrapper] ==== wrapper stdout END ====
[2024-12-16 11:08:21] 2024-12-16 19:08:21,733 [wrapper] ==== wrapper stderr END ====
[2024-12-16 11:08:21]  *** Error codes and diagnostics ***
[2024-12-16 11:08:21]     "exeErrorCode": 0,
[2024-12-16 11:08:21]     "exeErrorDiag": "",
[2024-12-16 11:08:21]     "pilotErrorCode": 0,
[2024-12-16 11:08:21]     "pilotErrorDiag": "",
[2024-12-16 11:08:21]  *** Listing of results directory ***
[2024-12-16 11:08:21] total 393028
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc      5651 Dec 16 07:01 queuedata.json
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc    489974 Dec 16 07:02 pilot3.tar.gz
[2024-12-16 11:08:21] -rwx------ 1 boinc boinc     34924 Dec 16 07:03 runpilot2-wrapper.sh
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc       100 Dec 16 09:30 wrapper_26015_x86_64-pc-linux-gnu
[2024-12-16 11:08:21] -rwxr-xr-x 1 boinc boinc      7986 Dec 16 09:30 run_atlas
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc       105 Dec 16 09:30 job.xml
[2024-12-16 11:08:21] -rw-r--r-- 2 boinc boinc 359313543 Dec 16 09:30 EVNT.42386622._000121.pool.root.1
[2024-12-16 11:08:21] -rw-r--r-- 2 boinc boinc     17567 Dec 16 09:30 start_atlas.sh
[2024-12-16 11:08:21] drwxrwx--x 2 boinc boinc      4096 Dec 16 09:30 shared
[2024-12-16 11:08:21] -rw-r--r-- 2 boinc boinc    502807 Dec 16 09:30 input.tar.gz
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc      9947 Dec 16 09:30 init_data.xml
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc         0 Dec 16 09:30 boinc_lockfile
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc      2822 Dec 16 09:30 pandaJob.out
[2024-12-16 11:08:21] -rw------- 1 boinc boinc       424 Dec 16 09:30 setup.sh.local
[2024-12-16 11:08:21] -rw------- 1 boinc boinc    982238 Dec 16 09:30 agis_schedconf.cvmfs.json
[2024-12-16 11:08:21] -rw------- 1 boinc boinc   1561209 Dec 16 09:30 agis_ddmendpoints.agis.ALL.json
[2024-12-16 11:08:21] drwx------ 4 boinc boinc      4096 Dec 16 09:30 pilot3
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc       528 Dec 16 10:57 boinc_task_state.xml
[2024-12-16 11:08:21] -rw------- 1 boinc boinc        95 Dec 16 11:07 pilot_heartbeat.json
[2024-12-16 11:08:21] -rw------- 1 boinc boinc  37286173 Dec 16 11:07 HITS.42386625._033110.pool.root.1
[2024-12-16 11:08:21] -rw------- 1 boinc boinc      1011 Dec 16 11:07 memory_monitor_summary.json
[2024-12-16 11:08:21] -rw------- 1 boinc boinc    534958 Dec 16 11:07 log.42386625._033110.job.log.tgz.1
[2024-12-16 11:08:21] -rw------- 1 boinc boinc      8418 Dec 16 11:08 heartbeat.json
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc      8192 Dec 16 11:08 boinc_mmap_file
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc        26 Dec 16 11:08 wrapper_checkpoint.txt
[2024-12-16 11:08:21] -rw------- 1 boinc boinc      4639 Dec 16 11:08 pilotlog.txt
[2024-12-16 11:08:21] -rw------- 1 boinc boinc    502894 Dec 16 11:08 log.42386625._033110.job.log.1
[2024-12-16 11:08:21] -rw------- 1 boinc boinc       353 Dec 16 11:08 output.list
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc       620 Dec 16 11:08 runtime_log
[2024-12-16 11:08:21] -rw------- 1 boinc boinc   1054720 Dec 16 11:08 result.tar.gz
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc     11117 Dec 16 11:08 runtime_log.err
[2024-12-16 11:08:21] -rw------- 1 boinc boinc       649 Dec 16 11:08 KOxNDmToRh6nsSi4ap6QjLDmwznN0nGgGQJmq4hLDmBuHMDmFrPNQo.diag
[2024-12-16 11:08:21] -rw-r--r-- 1 boinc boinc     21866 Dec 16 11:08 stderr.txt
[2024-12-16 11:08:21] HITS file was successfully produced:
[2024-12-16 11:08:21] -rw------- 1 boinc boinc 37286173 Dec 16 11:07 shared/HITS.pool.root.1
[2024-12-16 11:08:21]  *** Contents of shared directory: ***
[2024-12-16 11:08:21] total 388860
[2024-12-16 11:08:21] -rw-r--r-- 2 boinc boinc 359313543 Dec 16 09:30 ATLAS.root_0
[2024-12-16 11:08:21] -rw-r--r-- 2 boinc boinc     17567 Dec 16 09:30 start_atlas.sh
[2024-12-16 11:08:21] -rw-r--r-- 2 boinc boinc    502807 Dec 16 09:30 input.tar.gz
[2024-12-16 11:08:21] -rw------- 1 boinc boinc  37286173 Dec 16 11:07 HITS.pool.root.1
[2024-12-16 11:08:21] -rw------- 1 boinc boinc   1054720 Dec 16 11:08 result.tar.gz
11:08:22 (43086): run_atlas exited; CPU time 6956.775307
11:08:22 (43086): called boinc_finish(0)

</stderr_txt>
]]>

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