Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
01:16:00 (3679389): wrapper (7.7.26015): starting
01:16:00 (3679389): wrapper: running run_atlas (--nthreads 2)
[2024-12-16 01:16:00] Arguments: --nthreads 2
[2024-12-16 01:16:00] Threads: 2
[2024-12-16 01:16:00] Checking for CVMFS
[2024-12-16 01:16:00] Probing /cvmfs/atlas.cern.ch... OK
[2024-12-16 01:16:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-12-16 01:16:00] Running cvmfs_config stat atlas.cern.ch
[2024-12-16 01:16:00] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-12-16 01:16:00] 2.11.5.0 6557 6360 65480 140489 1 252 4019969 6144000 2396 130560 4 26433089 99.994 873187 1193 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2024-12-16 01:16:00] CVMFS is ok
[2024-12-16 01:16:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2024-12-16 01:16:00] Small home clusters do not require a local http proxy but it is suggested if
[2024-12-16 01:16:00] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2024-12-16 01:16:00] Further information can be found at the LHC@home message board.
[2024-12-16 01:16:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-12-16 01:16:00] Checking for apptainer binary...
[2024-12-16 01:16:00] apptainer is not installed, using version from CVMFS
[2024-12-16 01:16:00] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-12-16 01:16:00] k8plus
[2024-12-16 01:16:00] apptainer works
[2024-12-16 01:16:00] Set ATHENA_PROC_NUMBER=2
[2024-12-16 01:16:00] Set ATHENA_CORE_NUMBER=2
[2024-12-16 01:16:00] Starting ATLAS job with PandaID=6443343490
[2024-12-16 01:16:00] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-12-16 04:53:00]  *** The last 200 lines of the pilot log: ***
[2024-12-16 04:53:00] 2024-12-16 12:52:49,248 | INFO     | monitor loop #983: job 0:6443343490 is in state 'finished'
[2024-12-16 04:53:00] 2024-12-16 12:52:49,248 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2024-12-16 04:53:00] 2024-12-16 12:52:49,305 | INFO     | CPU arch script returned: x86-64-v4
[2024-12-16 04:53:00] 2024-12-16 12:52:49,305 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6443343490/memory_monitor_summary.json (trf name=prmon)
[2024-12-16 04:53:00] 2024-12-16 12:52:49,306 | INFO     | extracted standard info from prmon json
[2024-12-16 04:53:00] 2024-12-16 12:52:49,306 | INFO     | extracted standard memory fields from prmon json
[2024-12-16 04:53:00] 2024-12-16 12:52:49,306 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-12-16 04:53:00] 2024-12-16 12:52:49,306 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-12-16 04:53:00] 2024-12-16 12:52:49,306 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-12-16 04:53:00] 2024-12-16 12:52:49,308 | INFO     | fitting pss+swap vs Time
[2024-12-16 04:53:00] 2024-12-16 12:52:49,308 | INFO     | model: linear, x: [1734340600.0, 1734340661.0, 1734340722.0, 1734340783.0, 1734340844.0, 1734340905.0, 1734340966.0, 1734341027.0, 1734341088.0, 1734341149.0, 1734
[2024-12-16 04:53:00] 2024-12-16 12:52:49,308 | INFO     | sum of square deviations: 2996454322.0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,309 | INFO     | sum of deviations: 79869718345.00002
[2024-12-16 04:53:00] 2024-12-16 12:52:49,309 | INFO     | mean x: 1734347066.0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,309 | INFO     | mean y: 2224536.5774647887
[2024-12-16 04:53:00] 2024-12-16 12:52:49,309 | INFO     | -- intersect: -46226349901.173355
[2024-12-16 04:53:00] 2024-12-16 12:52:49,309 | INFO     | intersect: -46226349901.173355
[2024-12-16 04:53:00] 2024-12-16 12:52:49,309 | INFO     | chi2: 4.759866768008807
[2024-12-16 04:53:00] 2024-12-16 12:52:49,309 | INFO     | model: linear, x: [1734340600.0, 1734340661.0, 1734340722.0, 1734340783.0, 1734340844.0, 1734340905.0, 1734340966.0, 1734341027.0, 1734341088.0, 1734341149.0, 1734
[2024-12-16 04:53:00] 2024-12-16 12:52:49,309 | INFO     | sum of square deviations: 2790348132.0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,310 | INFO     | sum of deviations: 77923580597.50002
[2024-12-16 04:53:00] 2024-12-16 12:52:49,310 | INFO     | mean x: 1734346913.5
[2024-12-16 04:53:00] 2024-12-16 12:52:49,310 | INFO     | mean y: 2223096.3509615385
[2024-12-16 04:53:00] 2024-12-16 12:52:49,310 | INFO     | -- intersect: -48431346875.89315
[2024-12-16 04:53:00] 2024-12-16 12:52:49,310 | INFO     | intersect: -48431346875.89315
[2024-12-16 04:53:00] 2024-12-16 12:52:49,310 | INFO     | chi2: 4.764165581661491
[2024-12-16 04:53:00] 2024-12-16 12:52:49,310 | INFO     | current chi2=4.764165581661491 (change=-0.0903137390646269 %)
[2024-12-16 04:53:00] 2024-12-16 12:52:49,310 | INFO     | right removable region: 207
[2024-12-16 04:53:00] 2024-12-16 12:52:49,310 | INFO     | model: linear, x: [1734340905.0, 1734340966.0, 1734341027.0, 1734341088.0, 1734341149.0, 1734341210.0, 1734341271.0, 1734341332.0, 1734341393.0, 1734341454.0, 1734
[2024-12-16 04:53:00] 2024-12-16 12:52:49,310 | INFO     | sum of square deviations: 2790348132.0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,311 | INFO     | sum of deviations: 33653247410.499996
[2024-12-16 04:53:00] 2024-12-16 12:52:49,311 | INFO     | mean x: 1734347218.5
[2024-12-16 04:53:00] 2024-12-16 12:52:49,311 | INFO     | mean y: 2258638.514423077
[2024-12-16 04:53:00] 2024-12-16 12:52:49,311 | INFO     | -- intersect: -20914993718.11482
[2024-12-16 04:53:00] 2024-12-16 12:52:49,311 | INFO     | intersect: -20914993718.11482
[2024-12-16 04:53:00] 2024-12-16 12:52:49,311 | INFO     | chi2: 2.3114007867969026
[2024-12-16 04:53:00] 2024-12-16 12:52:49,311 | INFO     | current chi2=2.3114007867969026 (change=51.43980074543495 %)
[2024-12-16 04:53:00] 2024-12-16 12:52:49,311 | INFO     | model: linear, x: [1734341210.0, 1734341271.0, 1734341332.0, 1734341393.0, 1734341454.0, 1734341515.0, 1734341576.0, 1734341637.0, 1734341698.0, 1734341759.0, 1734
[2024-12-16 04:53:00] 2024-12-16 12:52:49,311 | INFO     | sum of square deviations: 2593916542.0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,312 | INFO     | sum of deviations: -4591421016.999993
[2024-12-16 04:53:00] 2024-12-16 12:52:49,312 | INFO     | mean x: 1734347371.0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,312 | INFO     | mean y: 2288332.487684729
[2024-12-16 04:53:00] 2024-12-16 12:52:49,312 | INFO     | -- intersect: 3072209373.1423864
[2024-12-16 04:53:00] 2024-12-16 12:52:49,312 | INFO     | intersect: 3072209373.1423864
[2024-12-16 04:53:00] 2024-12-16 12:52:49,312 | INFO     | chi2: 0.7587559884714025
[2024-12-16 04:53:00] 2024-12-16 12:52:49,312 | INFO     | current chi2=0.7587559884714025 (change=67.17332654702119 %)
[2024-12-16 04:53:00] 2024-12-16 12:52:49,312 | INFO     | model: linear, x: [1734341515.0, 1734341576.0, 1734341637.0, 1734341698.0, 1734341759.0, 1734341820.0, 1734341881.0, 1734341942.0, 1734342003.0, 1734342064.0, 1734
[2024-12-16 04:53:00] 2024-12-16 12:52:49,312 | INFO     | sum of square deviations: 2406926989.5
[2024-12-16 04:53:00] 2024-12-16 12:52:49,313 | INFO     | sum of deviations: -23083012958.499996
[2024-12-16 04:53:00] 2024-12-16 12:52:49,313 | INFO     | mean x: 1734347523.5
[2024-12-16 04:53:00] 2024-12-16 12:52:49,313 | INFO     | mean y: 2303217.984848485
[2024-12-16 04:53:00] 2024-12-16 12:52:49,313 | INFO     | -- intersect: 16635116150.881197
[2024-12-16 04:53:00] 2024-12-16 12:52:49,313 | INFO     | intersect: 16635116150.881197
[2024-12-16 04:53:00] 2024-12-16 12:52:49,313 | INFO     | chi2: 0.05401356550057957
[2024-12-16 04:53:00] 2024-12-16 12:52:49,313 | INFO     | current chi2=0.05401356550057957 (change=92.88129961130245 %)
[2024-12-16 04:53:00] 2024-12-16 12:52:49,313 | INFO     | model: linear, x: [1734341820.0, 1734341881.0, 1734341942.0, 1734342003.0, 1734342064.0, 1734342125.0, 1734342186.0, 1734342247.0, 1734342308.0, 1734342369.0, 1734
[2024-12-16 04:53:00] 2024-12-16 12:52:49,314 | INFO     | sum of square deviations: 2229146912.0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,314 | INFO     | sum of deviations: -20754586563.999996
[2024-12-16 04:53:00] 2024-12-16 12:52:49,314 | INFO     | mean x: 1734347676.0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,314 | INFO     | mean y: 2301220.6165803107
[2024-12-16 04:53:00] 2024-12-16 12:52:49,314 | INFO     | -- intersect: 16150034140.25567
[2024-12-16 04:53:00] 2024-12-16 12:52:49,314 | INFO     | intersect: 16150034140.25567
[2024-12-16 04:53:00] 2024-12-16 12:52:49,314 | INFO     | chi2: 0.05359458363529103
[2024-12-16 04:53:00] 2024-12-16 12:52:49,314 | INFO     | current chi2=0.05359458363529103 (change=0.7756974778568271 %)
[2024-12-16 04:53:00] 2024-12-16 12:52:49,314 | INFO     | left removable region: 40
[2024-12-16 04:53:00] 2024-12-16 12:52:49,314 | INFO     | model: linear, x: [1734343040.0, 1734343101.0, 1734343162.0, 1734343223.0, 1734343284.0, 1734343345.0, 1734343406.0, 1734343467.0, 1734343528.0, 1734343589.0, 1734
[2024-12-16 04:53:00] 2024-12-16 12:52:49,315 | INFO     | sum of square deviations: 1444149868.0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,315 | INFO     | sum of deviations: -8645433742.0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,315 | INFO     | mean x: 1734348103.0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,315 | INFO     | mean y: 2289612.958083832
[2024-12-16 04:53:00] 2024-12-16 12:52:49,315 | INFO     | -- intersect: 10385001229.180655
[2024-12-16 04:53:00] 2024-12-16 12:52:49,315 | INFO     | intersect: 10385001229.180655
[2024-12-16 04:53:00] 2024-12-16 12:52:49,315 | INFO     | chi2: 0.0369835858156127
[2024-12-16 04:53:00] 2024-12-16 12:52:49,315 | INFO     | -- intersect: 10385001229.180655
[2024-12-16 04:53:00] 2024-12-16 12:52:49,315 | INFO     | current memory leak: -5.99 B/s (using 167 data points, chi2=0.04)
[2024-12-16 04:53:00] 2024-12-16 12:52:49,316 | INFO     | ..............................
[2024-12-16 04:53:00] 2024-12-16 12:52:49,316 | INFO     | . Timing measurements:
[2024-12-16 04:53:00] 2024-12-16 12:52:49,316 | INFO     | . get job = 0 s
[2024-12-16 04:53:00] 2024-12-16 12:52:49,316 | INFO     | . initial setup = 9 s
[2024-12-16 04:53:00] 2024-12-16 12:52:49,316 | INFO     | . payload setup = 5 s
[2024-12-16 04:53:00] 2024-12-16 12:52:49,316 | INFO     | . stage-in = 0 s
[2024-12-16 04:53:00] 2024-12-16 12:52:49,316 | INFO     | . payload execution = 12959 s
[2024-12-16 04:53:00] 2024-12-16 12:52:49,316 | INFO     | . stage-out = 3 s
[2024-12-16 04:53:00] 2024-12-16 12:52:49,316 | INFO     | . log creation = 0 s
[2024-12-16 04:53:00] 2024-12-16 12:52:49,316 | INFO     | ..............................
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | 
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | job summary report
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | --------------------------------------------------
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | PanDA job id: 6443343490
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | task id: 42464860
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | errors: (none)
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | status: LOG_TRANSFER = DONE 
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | pilot state: finished 
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | transexitcode: 0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | exeerrorcode: 0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | exeerrordiag: 
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | exitcode: 0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | exitmsg: OK
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | cpuconsumptiontime: 24492 s
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | nevents: 400
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | neventsw: 0
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | pid: 3689853
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | pgrp: 3689853
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | corecount: 2
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | event service: False
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | sizes: {0: 2369108, 5: 2369314, 11: 2369370, 12968: 2399353, 12972: 2408308, 12973: 2408364, 12978: 2408662}
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | --------------------------------------------------
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | 
[2024-12-16 04:53:00] 2024-12-16 12:52:49,370 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2024-12-16 04:53:00] 2024-12-16 12:52:49,412 | INFO     | queue jobs had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,412 | INFO     | queue payloads had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,412 | INFO     | queue data_in had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,412 | INFO     | queue data_out had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,412 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,412 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,412 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,412 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,412 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | queue completed_jobids has 1 job(s)
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | queue messages had 0 job(s) [purged]
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | job 6443343490 has completed (purged errors)
[2024-12-16 04:53:00] 2024-12-16 12:52:49,413 | INFO     | overall cleanup function is called
[2024-12-16 04:53:00] 2024-12-16 12:52:50,422 | INFO     | --- collectZombieJob: --- 10, [3689853]
[2024-12-16 04:53:00] 2024-12-16 12:52:50,422 | INFO     | zombie collector waiting for pid 3689853
[2024-12-16 04:53:00] 2024-12-16 12:52:50,423 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-12-16 04:53:00] 2024-12-16 12:52:50,423 | INFO     | collected zombie processes
[2024-12-16 04:53:00] 2024-12-16 12:52:50,423 | INFO     | will attempt to kill all subprocesses of pid=3689853
[2024-12-16 04:53:00] 2024-12-16 12:52:50,535 | INFO     | process IDs to be killed: [3689853] (in reverse order)
[2024-12-16 04:53:00] 2024-12-16 12:52:50,636 | WARNING  | found no corresponding commands to process id(s)
[2024-12-16 04:53:00] 2024-12-16 12:52:50,636 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-12-16 04:53:00] 2024-12-16 12:52:50,639 | INFO     | did not find any defunct processes belonging to 3689853
[2024-12-16 04:53:00] 2024-12-16 12:52:50,642 | INFO     | did not find any defunct processes belonging to 3689853
[2024-12-16 04:53:00] 2024-12-16 12:52:50,642 | INFO     | ready for new job
[2024-12-16 04:53:00] 2024-12-16 12:52:50,642 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-12-16 04:53:00] 2024-12-16 12:52:50,644 | INFO     | *************************************
[2024-12-16 04:53:00] 2024-12-16 12:52:50,644 | INFO     | ***  PanDA Pilot version 3.9.3.2  ***
[2024-12-16 04:53:00] 2024-12-16 12:52:50,644 | INFO     | *************************************
[2024-12-16 04:53:00] 2024-12-16 12:52:50,644 | INFO     | 
[2024-12-16 04:53:00] 2024-12-16 12:52:50,645 | INFO     | architecture information:
[2024-12-16 04:53:00] 2024-12-16 12:52:50,645 | INFO     | executing command: cat /etc/os-release
[2024-12-16 04:53:00] 2024-12-16 12:52:50,678 | INFO     | cat /etc/os-release:
[2024-12-16 04:53:00] NAME="CentOS Linux"
[2024-12-16 04:53:00] 2024-12-16 12:52:50,678 | INFO     | *************************************
[2024-12-16 04:53:00] 2024-12-16 12:52:51,180 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2024-12-16 04:53:00] 2024-12-16 12:52:51,202 | INFO     | sufficient remaining disk space (132692049920 B)
[2024-12-16 04:53:00] 2024-12-16 12:52:51,203 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-12-16 04:53:00] 2024-12-16 12:52:51,203 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-12-16 04:53:00] 2024-12-16 12:52:51,203 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-12-16 04:53:00] 2024-12-16 12:52:51,203 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-12-16 04:53:00] 2024-12-16 12:52:51,203 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-12-16 04:53:00] 2024-12-16 12:52:51,203 | INFO     | aborting loop
[2024-12-16 04:53:00] 2024-12-16 12:52:51,261 | INFO     | all payload control threads have been joined
[2024-12-16 04:53:00] 2024-12-16 12:52:51,267 | INFO     | found 0 job(s) in 20 queues
[2024-12-16 04:53:00] 2024-12-16 12:52:51,267 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-12-16 04:53:00] 2024-12-16 12:52:51,267 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-12-16 04:53:00] 2024-12-16 12:52:51,456 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-12-16 04:53:00] 2024-12-16 12:52:51,712 | INFO     | all job control threads have been joined
[2024-12-16 04:53:00] 2024-12-16 12:52:51,774 | INFO     | all data control threads have been joined
[2024-12-16 04:53:00] 2024-12-16 12:52:52,208 | INFO     | [job] retrieve thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:52,208 | INFO     | [job] job monitor thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:52,210 | INFO     | [job] queue monitor thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:52,267 | INFO     | [payload] control thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:52,534 | INFO     | [payload] execute_payloads thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:52,717 | INFO     | [job] control thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:52,775 | INFO     | [data] control thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:53,042 | INFO     | [payload] failed_post thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:53,374 | INFO     | [job] validate thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:53,462 | INFO     | [data] copytool_out thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:53,518 | INFO     | [job] create_data_payload thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:53,533 | INFO     | [data] copytool_in thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:53,575 | INFO     | [payload] validate_pre thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:53,646 | INFO     | [payload] run_realtimelog thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:53,679 | INFO     | [payload] validate_post thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:55,211 | INFO     | [data] queue_monitor thread has finished
[2024-12-16 04:53:00] 2024-12-16 12:52:55,343 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131981627225920)>', '<ExcThread(monitor, started 131981157336832)>']
[2024-12-16 04:53:00] 2024-12-16 12:52:56,292 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-12-16 04:53:00] 2024-12-16 12:52:56,292 | INFO     | [monitor] control thread has ended
[2024-12-16 04:53:00] 2024-12-16 12:53:00,369 | INFO     | all workflow threads have been joined
[2024-12-16 04:53:00] 2024-12-16 12:53:00,369 | INFO     | end of generic workflow (traces error code: 0)
[2024-12-16 04:53:00] 2024-12-16 12:53:00,369 | INFO     | traces error code: 0
[2024-12-16 04:53:00] 2024-12-16 12:53:00,369 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-12-16 04:53:00] 2024-12-16 12:53:00,516 [wrapper] ==== pilot stdout END ====
[2024-12-16 04:53:00] 2024-12-16 12:53:00,518 [wrapper] ==== wrapper stdout RESUME ====
[2024-12-16 04:53:00] 2024-12-16 12:53:00,521 [wrapper] pilotpid: 3683143
[2024-12-16 04:53:00] 2024-12-16 12:53:00,523 [wrapper] Pilot exit status: 0
[2024-12-16 04:53:00] 2024-12-16 12:53:00,542 [wrapper] pandaids: 6443343490
[2024-12-16 04:53:00] 2024-12-16 12:53:00,567 [wrapper] cleanup supervisor_pilot 3876094 3683144
[2024-12-16 04:53:00] 2024-12-16 12:53:00,569 [wrapper] Test setup, not cleaning
[2024-12-16 04:53:00] 2024-12-16 12:53:00,572 [wrapper] apfmon messages muted
[2024-12-16 04:53:00] 2024-12-16 12:53:00,574 [wrapper] ==== wrapper stdout END ====
[2024-12-16 04:53:00] 2024-12-16 12:53:00,576 [wrapper] ==== wrapper stderr END ====
[2024-12-16 04:53:00]  *** Error codes and diagnostics ***
[2024-12-16 04:53:00]     "exeErrorCode": 0,
[2024-12-16 04:53:00]     "exeErrorDiag": "",
[2024-12-16 04:53:00]     "pilotErrorCode": 0,
[2024-12-16 04:53:00]     "pilotErrorDiag": "",
[2024-12-16 04:53:00]  *** Listing of results directory ***
[2024-12-16 04:53:00] total 2507648
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc     489974 Dec 15 23:05 pilot3.tar.gz
[2024-12-16 04:53:00] -rwx------ 1 boinc boinc      34924 Dec 15 23:20 runpilot2-wrapper.sh
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc       5651 Dec 15 23:20 queuedata.json
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc        100 Dec 16 01:15 wrapper_26015_x86_64-pc-linux-gnu
[2024-12-16 04:53:00] -rwxr-xr-x 1 boinc boinc       7986 Dec 16 01:15 run_atlas
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc        105 Dec 16 01:15 job.xml
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc       9946 Dec 16 01:15 init_data.xml
[2024-12-16 04:53:00] -rw-r--r-- 2 boinc boinc 2384001196 Dec 16 01:15 EVNT.42464856._000008.pool.root.1
[2024-12-16 04:53:00] -rw-r--r-- 2 boinc boinc      17567 Dec 16 01:16 start_atlas.sh
[2024-12-16 04:53:00] drwxrwx--x 2 boinc boinc       4096 Dec 16 01:16 shared
[2024-12-16 04:53:00] -rw-r--r-- 2 boinc boinc     502664 Dec 16 01:16 input.tar.gz
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc          0 Dec 16 01:16 boinc_lockfile
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc       2562 Dec 16 01:16 pandaJob.out
[2024-12-16 04:53:00] -rw------- 1 boinc boinc        424 Dec 16 01:16 setup.sh.local
[2024-12-16 04:53:00] -rw------- 1 boinc boinc     982909 Dec 16 01:16 agis_schedconf.cvmfs.json
[2024-12-16 04:53:00] drwx------ 4 boinc boinc       4096 Dec 16 01:16 pilot3
[2024-12-16 04:53:00] -rw------- 1 boinc boinc  176905284 Dec 16 04:52 HITS.42464860._001844.pool.root.1
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc        531 Dec 16 04:52 boinc_task_state.xml
[2024-12-16 04:53:00] -rw------- 1 boinc boinc       1026 Dec 16 04:52 memory_monitor_summary.json
[2024-12-16 04:53:00] -rw------- 1 boinc boinc    1572020 Dec 16 04:52 agis_ddmendpoints.agis.ALL.json
[2024-12-16 04:53:00] -rw------- 1 boinc boinc         95 Dec 16 04:52 pilot_heartbeat.json
[2024-12-16 04:53:00] -rw------- 1 boinc boinc     386235 Dec 16 04:52 log.42464860._001844.job.log.tgz.1
[2024-12-16 04:53:00] -rw------- 1 boinc boinc       7673 Dec 16 04:52 heartbeat.json
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc         28 Dec 16 04:52 wrapper_checkpoint.txt
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc       8192 Dec 16 04:52 boinc_mmap_file
[2024-12-16 04:53:00] -rw------- 1 boinc boinc       3846 Dec 16 04:53 pilotlog.txt
[2024-12-16 04:53:00] -rw------- 1 boinc boinc    1183610 Dec 16 04:53 log.42464860._001844.job.log.1
[2024-12-16 04:53:00] -rw------- 1 boinc boinc        357 Dec 16 04:53 output.list
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc        620 Dec 16 04:53 runtime_log
[2024-12-16 04:53:00] -rw------- 1 boinc boinc    1587200 Dec 16 04:53 result.tar.gz
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc      11118 Dec 16 04:53 runtime_log.err
[2024-12-16 04:53:00] -rw------- 1 boinc boinc        652 Dec 16 04:53 otBNDm1ZKh6n9Rq4apOajLDm4fhM0noT9bVo8p0KDmXLJLDmAWyQjm.diag
[2024-12-16 04:53:00] -rw-r--r-- 1 boinc boinc      22593 Dec 16 04:53 stderr.txt
[2024-12-16 04:53:00] HITS file was successfully produced:
[2024-12-16 04:53:00] -rw------- 1 boinc boinc 176905284 Dec 16 04:52 shared/HITS.pool.root.1
[2024-12-16 04:53:00]  *** Contents of shared directory: ***
[2024-12-16 04:53:00] total 2502960
[2024-12-16 04:53:00] -rw-r--r-- 2 boinc boinc 2384001196 Dec 16 01:15 ATLAS.root_0
[2024-12-16 04:53:00] -rw-r--r-- 2 boinc boinc      17567 Dec 16 01:16 start_atlas.sh
[2024-12-16 04:53:00] -rw-r--r-- 2 boinc boinc     502664 Dec 16 01:16 input.tar.gz
[2024-12-16 04:53:00] -rw------- 1 boinc boinc  176905284 Dec 16 04:52 HITS.pool.root.1
[2024-12-16 04:53:00] -rw------- 1 boinc boinc    1587200 Dec 16 04:53 result.tar.gz
04:53:01 (3679389): run_atlas exited; CPU time 24415.867754
04:53:01 (3679389): called boinc_finish(0)

</stderr_txt>
]]>

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