Stderr output

<core_client_version>7.4.25</core_client_version>
<![CDATA[
<stderr_txt>
02:01:07 (4057): wrapper (7.7.26015): starting
02:01:07 (4057): wrapper: running run_atlas (--nthreads 4)
[2024-12-16 02:01:07] Arguments: --nthreads 4
[2024-12-16 02:01:07] Threads: 4
[2024-12-16 02:01:07] Checking for CVMFS
[2024-12-16 02:01:20] Probing /cvmfs/atlas.cern.ch... OK
[2024-12-16 02:01:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-12-16 02:01:31] Running cvmfs_config stat atlas.cern.ch
[2024-12-16 02:01:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-12-16 02:01:31] 2.11.5.0 4266 0 23656 140488 3 1 3859703 4096000 0 130560 0 0 100.000 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.100.152:3128 1
[2024-12-16 02:01:31] CVMFS is ok
[2024-12-16 02:01:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-12-16 02:01:31] Checking for apptainer binary...
[2024-12-16 02:01:31] Using apptainer found in PATH at /usr/bin/apptainer
[2024-12-16 02:01:31] Running /usr/bin/apptainer --version
[2024-12-16 02:01:32] apptainer version 1.0.3
[2024-12-16 02:01:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-12-16 02:01:33] TeeC28
[2024-12-16 02:01:33] apptainer works
[2024-12-16 02:01:33] Set ATHENA_PROC_NUMBER=4
[2024-12-16 02:01:33] Set ATHENA_CORE_NUMBER=4
[2024-12-16 02:01:33] Starting ATLAS job with PandaID=6443033015
[2024-12-16 02:01:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/m/users/jmp/BOINC/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-12-16 03:39:16]  *** The last 200 lines of the pilot log: ***
[2024-12-16 03:39:16]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-12-16 03:39:16]  is_altstaged=None
[2024-12-16 03:39:16]  is_tar=False
[2024-12-16 03:39:16]  lfn=log.42386615._033055.job.log.tgz.1
[2024-12-16 03:39:16]  mtime=0
[2024-12-16 03:39:16]  protocol_id=None
[2024-12-16 03:39:16]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-12-16 03:39:16]  replicas=None
[2024-12-16 03:39:16]  scope=mc16_13TeV
[2024-12-16 03:39:16]  status=None
[2024-12-16 03:39:16]  status_code=0
[2024-12-16 03:39:16]  storage_token=
[2024-12-16 03:39:16]  surl=/home/m/users/jmp/BOINC/slots/3/PanDA_Pilot-6443033015/log.42386615._033055.job.log.tgz.1
[2024-12-16 03:39:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/72/dc/log.42386615._033055.job.log.tgz.1
[2024-12-16 03:39:16]  workdir=None
[2024-12-16 03:39:16] ]
[2024-12-16 03:39:16] 2024-12-16 03:38:25,546 | INFO     | transferring file log.42386615._033055.job.log.tgz.1 from /home/m/users/jmp/BOINC/slots/3/PanDA_Pilot-6443033015/log.42386615._033055.job.log.tgz.1 to /home/m/user
[2024-12-16 03:39:16] 2024-12-16 03:38:25,546 | INFO     | executing command: /usr/bin/env mv /home/m/users/jmp/BOINC/slots/3/PanDA_Pilot-6443033015/log.42386615._033055.job.log.tgz.1 /home/m/users/jmp/BOINC/slots/3/log.42
[2024-12-16 03:39:16] 2024-12-16 03:38:25,560 | INFO     | adding to output.list: log.42386615._033055.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc16_13TeV/72/dc/log.42386615._033055.job.log.tgz.
[2024-12-16 03:39:16] 2024-12-16 03:38:25,561 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2024-12-16 03:39:16] 2024-12-16 03:38:25,561 | INFO     | summary of transferred files:
[2024-12-16 03:39:16] 2024-12-16 03:38:25,561 | INFO     |  -- lfn=log.42386615._033055.job.log.tgz.1, status_code=0, status=transferred
[2024-12-16 03:39:16] 2024-12-16 03:38:25,561 | INFO     | stage-out finished correctly
[2024-12-16 03:39:16] 2024-12-16 03:38:25,719 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-12-16 03:39:16] 2024-12-16 03:38:25,824 | INFO     | job 6443033015 has state=finished
[2024-12-16 03:39:16] 2024-12-16 03:38:25,824 | INFO     | preparing for final server update for job 6443033015 in state='finished'
[2024-12-16 03:39:16] 2024-12-16 03:38:25,825 | INFO     | this job has now completed (state=finished)
[2024-12-16 03:39:16] 2024-12-16 03:38:25,825 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-12-16 03:39:16] 2024-12-16 03:38:25,825 | INFO     | log transfer has been attempted: DONE
[2024-12-16 03:39:16] 2024-12-16 03:38:25,825 | INFO     | job 6443033015 has finished - writing final server update
[2024-12-16 03:39:16] 2024-12-16 03:38:25,825 | INFO     | total number of processed events: 50 (read)
[2024-12-16 03:39:16] 2024-12-16 03:38:25,843 | INFO     | executing command: lscpu
[2024-12-16 03:39:16] 2024-12-16 03:38:25,857 | INFO     | found 2 cores (2 cores per socket, 1 sockets)
[2024-12-16 03:39:16] 2024-12-16 03:38:25,873 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-12-16 03:39:16] 2024-12-16 03:38:30,267 | INFO     | 5792s have passed since pilot start
[2024-12-16 03:39:16] 2024-12-16 03:38:57,537 | INFO     | CPU arch script returned: x86-64-v3
[2024-12-16 03:39:16] 2024-12-16 03:38:57,537 | INFO     | using path: /home/m/users/jmp/BOINC/slots/3/PanDA_Pilot-6443033015/memory_monitor_summary.json (trf name=prmon)
[2024-12-16 03:39:16] 2024-12-16 03:38:57,540 | INFO     | extracted standard info from prmon json
[2024-12-16 03:39:16] 2024-12-16 03:38:57,541 | INFO     | extracted standard memory fields from prmon json
[2024-12-16 03:39:16] 2024-12-16 03:38:57,541 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-12-16 03:39:16] 2024-12-16 03:38:57,544 | INFO     | fitting pss+swap vs Time
[2024-12-16 03:39:16] 2024-12-16 03:38:57,544 | INFO     | model: linear, x: [1734314863.0, 1734314924.0, 1734314985.0, 1734315046.0, 1734315107.0, 1734315168.0, 1734315229.0, 1734315290.0, 1734315351.0, 1734315412.0, 1734
[2024-12-16 03:39:16] 2024-12-16 03:38:57,545 | INFO     | sum of square deviations: 211285822.0
[2024-12-16 03:39:16] 2024-12-16 03:38:57,545 | INFO     | sum of deviations: 38238229175.99999
[2024-12-16 03:39:16] 2024-12-16 03:38:57,545 | INFO     | mean x: 1734317516.5
[2024-12-16 03:39:16] 2024-12-16 03:38:57,545 | INFO     | mean y: 1879498.1363636365
[2024-12-16 03:39:16] 2024-12-16 03:38:57,545 | INFO     | -- intersect: -313872615402.32196
[2024-12-16 03:39:16] 2024-12-16 03:38:57,546 | INFO     | intersect: -313872615402.32196
[2024-12-16 03:39:16] 2024-12-16 03:38:57,546 | INFO     | chi2: 5.949065643128516
[2024-12-16 03:39:16] 2024-12-16 03:38:57,546 | INFO     | -- intersect: -313872615402.32196
[2024-12-16 03:39:16] 2024-12-16 03:38:57,546 | INFO     | current memory leak: 180.98 B/s (using 88 data points, chi2=5.95)
[2024-12-16 03:39:16] 2024-12-16 03:38:57,546 | INFO     | ..............................
[2024-12-16 03:39:16] 2024-12-16 03:38:57,546 | INFO     | . Timing measurements:
[2024-12-16 03:39:16] 2024-12-16 03:38:57,547 | INFO     | . get job = 0 s
[2024-12-16 03:39:16] 2024-12-16 03:38:57,547 | INFO     | . initial setup = 17 s
[2024-12-16 03:39:16] 2024-12-16 03:38:57,547 | INFO     | . payload setup = 5 s
[2024-12-16 03:39:16] 2024-12-16 03:38:57,547 | INFO     | . stage-in = 0 s
[2024-12-16 03:39:16] 2024-12-16 03:38:57,547 | INFO     | . payload execution = 5746 s
[2024-12-16 03:39:16] 2024-12-16 03:38:57,547 | INFO     | . stage-out = 0 s
[2024-12-16 03:39:16] 2024-12-16 03:38:57,547 | INFO     | . log creation = 0 s
[2024-12-16 03:39:16] 2024-12-16 03:38:57,547 | INFO     | ..............................
[2024-12-16 03:39:16] 2024-12-16 03:38:57,619 | WARNING  | process 14649 can no longer be monitored (due to stat problems) - aborting
[2024-12-16 03:39:16] 2024-12-16 03:38:57,625 | INFO     | using path: /home/m/users/jmp/BOINC/slots/3/PanDA_Pilot-6443033015/memory_monitor_summary.json (trf name=prmon)
[2024-12-16 03:39:16] 2024-12-16 03:38:57,690 | INFO     | number of running child processes to parent process 14649: 1
[2024-12-16 03:39:16] 2024-12-16 03:38:57,690 | INFO     | maximum number of monitored processes: 12
[2024-12-16 03:39:16] 2024-12-16 03:38:57,690 | INFO     | aborting job monitoring since job object (job id=6443033015) has expired
[2024-12-16 03:39:16] 2024-12-16 03:38:58,010 | INFO     | 
[2024-12-16 03:39:16] 2024-12-16 03:38:58,010 | INFO     | job summary report
[2024-12-16 03:39:16] 2024-12-16 03:38:58,011 | INFO     | --------------------------------------------------
[2024-12-16 03:39:16] 2024-12-16 03:38:58,011 | INFO     | PanDA job id: 6443033015
[2024-12-16 03:39:16] 2024-12-16 03:38:58,011 | INFO     | task id: 42386615
[2024-12-16 03:39:16] 2024-12-16 03:38:58,012 | INFO     | errors: (none)
[2024-12-16 03:39:16] 2024-12-16 03:38:58,012 | INFO     | status: LOG_TRANSFER = DONE 
[2024-12-16 03:39:16] 2024-12-16 03:38:58,012 | INFO     | pilot state: finished 
[2024-12-16 03:39:16] 2024-12-16 03:38:58,013 | INFO     | transexitcode: 0
[2024-12-16 03:39:16] 2024-12-16 03:38:58,013 | INFO     | exeerrorcode: 0
[2024-12-16 03:39:16] 2024-12-16 03:38:58,013 | INFO     | exeerrordiag: 
[2024-12-16 03:39:16] 2024-12-16 03:38:58,014 | INFO     | exitcode: 0
[2024-12-16 03:39:16] 2024-12-16 03:38:58,014 | INFO     | exitmsg: OK
[2024-12-16 03:39:16] 2024-12-16 03:38:58,015 | INFO     | cpuconsumptiontime: 13398 s
[2024-12-16 03:39:16] 2024-12-16 03:38:58,015 | INFO     | nevents: 50
[2024-12-16 03:39:16] 2024-12-16 03:38:58,015 | INFO     | neventsw: 0
[2024-12-16 03:39:16] 2024-12-16 03:38:58,015 | INFO     | pid: 14649
[2024-12-16 03:39:16] 2024-12-16 03:38:58,016 | INFO     | pgrp: 14649
[2024-12-16 03:39:16] 2024-12-16 03:38:58,016 | INFO     | corecount: 4
[2024-12-16 03:39:16] 2024-12-16 03:38:58,016 | INFO     | event service: False
[2024-12-16 03:39:16] 2024-12-16 03:38:58,017 | INFO     | sizes: {0: 2369588, 3: 2369794, 11: 2369822, 5755: 2397192, 5757: 2406203, 5789: 2406369}
[2024-12-16 03:39:16] 2024-12-16 03:38:58,017 | INFO     | --------------------------------------------------
[2024-12-16 03:39:16] 2024-12-16 03:38:58,017 | INFO     | 
[2024-12-16 03:39:16] 2024-12-16 03:38:58,018 | INFO     | executing command: ls -lF /home/m/users/jmp/BOINC/slots/3
[2024-12-16 03:39:16] 2024-12-16 03:38:58,056 | INFO     | queue jobs had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,057 | INFO     | queue payloads had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,057 | INFO     | queue data_in had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,057 | INFO     | queue data_out had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,058 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,058 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,058 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,059 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,059 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,059 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,060 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,060 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,060 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,061 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,061 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,061 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,062 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,062 | INFO     | queue completed_jobids has 1 job(s)
[2024-12-16 03:39:16] 2024-12-16 03:38:58,062 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,063 | INFO     | queue messages had 0 job(s) [purged]
[2024-12-16 03:39:16] 2024-12-16 03:38:58,063 | INFO     | job 6443033015 has completed (purged errors)
[2024-12-16 03:39:16] 2024-12-16 03:38:58,063 | INFO     | overall cleanup function is called
[2024-12-16 03:39:16] 2024-12-16 03:38:59,079 | INFO     | --- collectZombieJob: --- 10, [14649]
[2024-12-16 03:39:16] 2024-12-16 03:38:59,080 | INFO     | zombie collector waiting for pid 14649
[2024-12-16 03:39:16] 2024-12-16 03:38:59,080 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-12-16 03:39:16] 2024-12-16 03:38:59,081 | INFO     | collected zombie processes
[2024-12-16 03:39:16] 2024-12-16 03:38:59,081 | INFO     | will attempt to kill all subprocesses of pid=14649
[2024-12-16 03:39:16] 2024-12-16 03:38:59,140 | INFO     | process IDs to be killed: [14649] (in reverse order)
[2024-12-16 03:39:16] 2024-12-16 03:38:59,169 | WARNING  | found no corresponding commands to process id(s)
[2024-12-16 03:39:16] 2024-12-16 03:38:59,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-12-16 03:39:16] 2024-12-16 03:38:59,172 | INFO     | did not find any defunct processes belonging to 14649
[2024-12-16 03:39:16] 2024-12-16 03:38:59,174 | INFO     | did not find any defunct processes belonging to 14649
[2024-12-16 03:39:16] 2024-12-16 03:38:59,174 | INFO     | ready for new job
[2024-12-16 03:39:16] 2024-12-16 03:38:59,174 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-12-16 03:39:16] 2024-12-16 03:38:59,175 | INFO     | *************************************
[2024-12-16 03:39:16] 2024-12-16 03:38:59,175 | INFO     | ***  PanDA Pilot version 3.9.3.2  ***
[2024-12-16 03:39:16] 2024-12-16 03:38:59,175 | INFO     | *************************************
[2024-12-16 03:39:16] 2024-12-16 03:38:59,175 | INFO     | 
[2024-12-16 03:39:16] 2024-12-16 03:38:59,194 | INFO     | architecture information:
[2024-12-16 03:39:16] 2024-12-16 03:38:59,195 | INFO     | executing command: cat /etc/os-release
[2024-12-16 03:39:16] 2024-12-16 03:38:59,210 | INFO     | cat /etc/os-release:
[2024-12-16 03:39:16] NAME="CentOS Linux"
[2024-12-16 03:39:16] VERSION="7 (Core)"
[2024-12-16 03:39:16] ID="centos"
[2024-12-16 03:39:16] ID_LIKE="rhel fedora"
[2024-12-16 03:39:16] VERSION_ID="7"
[2024-12-16 03:39:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-12-16 03:39:16] ANSI_COLOR="0;31"
[2024-12-16 03:39:16] CPE_NAME="cpe:/o:centos:centos:7"
[2024-12-16 03:39:16] HOME_URL="https://www.centos.org/"
[2024-12-16 03:39:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-12-16 03:39:16] 
[2024-12-16 03:39:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-12-16 03:39:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-12-16 03:39:16] REDHAT_SUPPORT_PRODUCT="centos"
[2024-12-16 03:39:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-12-16 03:39:16] 
[2024-12-16 03:39:16] 2024-12-16 03:38:59,211 | INFO     | *************************************
[2024-12-16 03:39:16] 2024-12-16 03:38:59,714 | INFO     | executing command: df -mP /home/m/users/jmp/BOINC/slots/3
[2024-12-16 03:39:16] 2024-12-16 03:38:59,733 | INFO     | sufficient remaining disk space (421728878592 B)
[2024-12-16 03:39:16] 2024-12-16 03:38:59,734 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-12-16 03:39:16] 2024-12-16 03:38:59,734 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-12-16 03:39:16] 2024-12-16 03:38:59,735 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-12-16 03:39:16] 2024-12-16 03:38:59,735 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-12-16 03:39:16] 2024-12-16 03:38:59,736 | INFO     | found 0 job(s) in 20 queues
[2024-12-16 03:39:16] 2024-12-16 03:38:59,737 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-12-16 03:39:16] 2024-12-16 03:38:59,737 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-12-16 03:39:16] 2024-12-16 03:39:00,194 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2024-12-16 03:39:16] 2024-12-16 03:39:00,194 | WARNING  | cannot recover job monitoring - aborting pilot
[2024-12-16 03:39:16] 2024-12-16 03:39:00,195 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-12-16 03:39:16] 2024-12-16 03:39:00,195 | INFO     | will abort loop
[2024-12-16 03:39:16] 2024-12-16 03:39:00,480 | INFO     | all job control threads have been joined
[2024-12-16 03:39:16] 2024-12-16 03:39:00,499 | INFO     | all payload control threads have been joined
[2024-12-16 03:39:16] 2024-12-16 03:39:00,524 | INFO     | all data control threads have been joined
[2024-12-16 03:39:16] 2024-12-16 03:39:00,740 | INFO     | [job] retrieve thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:01,062 | INFO     | [job] create_data_payload thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:01,201 | INFO     | [job] job monitor thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:01,202 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-12-16 03:39:16] 2024-12-16 03:39:01,210 | INFO     | [payload] validate_pre thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:01,304 | INFO     | [payload] failed_post thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:01,428 | INFO     | [payload] execute_payloads thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:01,486 | INFO     | [job] control thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:01,505 | INFO     | [payload] control thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:01,530 | INFO     | [data] control thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:02,022 | INFO     | [data] copytool_in thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:02,046 | INFO     | [job] validate thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:02,332 | INFO     | [payload] validate_post thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:02,665 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-12-16 03:39:16] 2024-12-16 03:39:03,208 | INFO     | [data] copytool_out thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:03,671 | INFO     | [job] queue monitor thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:03,743 | INFO     | [data] queue_monitor thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:10,024 | INFO     | job.realtimelogging is not enabled
[2024-12-16 03:39:16] 2024-12-16 03:39:11,028 | INFO     | [payload] run_realtimelog thread has finished
[2024-12-16 03:39:16] 2024-12-16 03:39:11,573 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140235584259904)>', '<ExcThread(monitor, started 140235136542464)>']
[2024-12-16 03:39:16] 2024-12-16 03:39:11,794 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-12-16 03:39:16] 2024-12-16 03:39:11,795 | INFO     | [monitor] control thread has ended
[2024-12-16 03:39:16] 2024-12-16 03:39:16,599 | INFO     | all workflow threads have been joined
[2024-12-16 03:39:16] 2024-12-16 03:39:16,599 | INFO     | end of generic workflow (traces error code: 0)
[2024-12-16 03:39:16] 2024-12-16 03:39:16,600 | INFO     | traces error code: 0
[2024-12-16 03:39:16] 2024-12-16 03:39:16,601 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-12-16 03:39:16] 2024-12-16 03:39:16,691 [wrapper] ==== pilot stdout END ====
[2024-12-16 03:39:16] 2024-12-16 03:39:16,693 [wrapper] ==== wrapper stdout RESUME ====
[2024-12-16 03:39:16] 2024-12-16 03:39:16,695 [wrapper] pilotpid: 8263
[2024-12-16 03:39:16] 2024-12-16 03:39:16,696 [wrapper] Pilot exit status: 0
[2024-12-16 03:39:16] 2024-12-16 03:39:16,702 [wrapper] pandaids: 6443033015
[2024-12-16 03:39:16] 2024-12-16 03:39:16,718 [wrapper] cleanup supervisor_pilot 29209 8264
[2024-12-16 03:39:16] 2024-12-16 03:39:16,720 [wrapper] Test setup, not cleaning
[2024-12-16 03:39:16] 2024-12-16 03:39:16,723 [wrapper] apfmon messages muted
[2024-12-16 03:39:16] 2024-12-16 03:39:16,725 [wrapper] ==== wrapper stdout END ====
[2024-12-16 03:39:16] 2024-12-16 03:39:16,727 [wrapper] ==== wrapper stderr END ====
[2024-12-16 03:39:16]  *** Error codes and diagnostics ***
[2024-12-16 03:39:16]     "exeErrorCode": 0,
[2024-12-16 03:39:16]     "exeErrorDiag": "",
[2024-12-16 03:39:16]     "pilotErrorCode": 0,
[2024-12-16 03:39:16]     "pilotErrorDiag": "",
[2024-12-16 03:39:16]  *** Listing of results directory ***
[2024-12-16 03:39:16] total 395408
[2024-12-16 03:39:16] -rw-r--r-- 1 m m    489974 Dec 15 23:35 pilot3.tar.gz
[2024-12-16 03:39:16] -rw-r--r-- 1 m m      5651 Dec 15 23:41 queuedata.json
[2024-12-16 03:39:16] -rwx------ 1 m m     34924 Dec 15 23:43 runpilot2-wrapper.sh
[2024-12-16 03:39:16] -rw-rw-r-- 1 m m       100 Dec 16 02:01 wrapper_26015_x86_64-pc-linux-gnu
[2024-12-16 03:39:16] -rwxr-xr-x 1 m m      7986 Dec 16 02:01 run_atlas
[2024-12-16 03:39:16] -rw-rw-r-- 1 m m       105 Dec 16 02:01 job.xml
[2024-12-16 03:39:16] -rw-r--r-- 2 m m     17567 Dec 16 02:01 start_atlas.sh
[2024-12-16 03:39:16] drwxrwx--x 2 m m      4096 Dec 16 02:01 shared
[2024-12-16 03:39:16] -rw-r--r-- 2 m m    502810 Dec 16 02:01 input.tar.gz
[2024-12-16 03:39:16] -rw-rw-r-- 1 m m      6034 Dec 16 02:01 init_data.xml
[2024-12-16 03:39:16] -rw-r--r-- 2 m m 358150984 Dec 16 02:01 EVNT.42386612._000111.pool.root.1
[2024-12-16 03:39:16] -rw-rw-r-- 1 m m         0 Dec 16 02:01 boinc_lockfile
[2024-12-16 03:39:16] -rw-rw-r-- 1 m m      2812 Dec 16 02:01 pandaJob.out
[2024-12-16 03:39:16] -rw------- 1 m m       424 Dec 16 02:01 setup.sh.local
[2024-12-16 03:39:16] -rw------- 1 m m    982909 Dec 16 02:01 agis_schedconf.cvmfs.json
[2024-12-16 03:39:16] -rw------- 1 m m   1572020 Dec 16 02:02 agis_ddmendpoints.agis.ALL.json
[2024-12-16 03:39:16] drwx------ 4 m m      4096 Dec 16 02:02 pilot3
[2024-12-16 03:39:16] -rw-rw-r-- 1 m m       529 Dec 16 03:27 boinc_task_state.xml
[2024-12-16 03:39:16] -rw------- 1 m m        95 Dec 16 03:38 pilot_heartbeat.json
[2024-12-16 03:39:16] -rw------- 1 m m  40459025 Dec 16 03:38 HITS.42386615._033055.pool.root.1
[2024-12-16 03:39:16] -rw------- 1 m m      1042 Dec 16 03:38 memory_monitor_summary.json
[2024-12-16 03:39:16] -rw------- 1 m m    757281 Dec 16 03:38 log.42386615._033055.job.log.tgz.1
[2024-12-16 03:39:16] -rw------- 1 m m      8493 Dec 16 03:38 heartbeat.json
[2024-12-16 03:39:16] -rw-rw-r-- 1 m m      8192 Dec 16 03:38 boinc_mmap_file
[2024-12-16 03:39:16] -rw-rw-r-- 1 m m        27 Dec 16 03:38 wrapper_checkpoint.txt
[2024-12-16 03:39:16] -rw------- 1 m m      4602 Dec 16 03:39 pilotlog.txt
[2024-12-16 03:39:16] -rw------- 1 m m    491878 Dec 16 03:39 log.42386615._033055.job.log.1
[2024-12-16 03:39:16] -rw------- 1 m m       353 Dec 16 03:39 output.list
[2024-12-16 03:39:16] -rw-rw-r-- 1 m m       620 Dec 16 03:39 runtime_log
[2024-12-16 03:39:16] -rw------- 1 m m   1269760 Dec 16 03:39 result.tar.gz
[2024-12-16 03:39:16] -rw-rw-r-- 1 m m     11102 Dec 16 03:39 runtime_log.err
[2024-12-16 03:39:16] -rw------- 1 m m       641 Dec 16 03:39 dPOMDmASDh6n7OlckoGmwREmGgkVDo1bjSoqACqYDmAVKKDmNBu30n.diag
[2024-12-16 03:39:16] -rw-rw-r-- 1 m m     21163 Dec 16 03:39 stderr.txt
[2024-12-16 03:39:16] HITS file was successfully produced:
[2024-12-16 03:39:16] -rw------- 1 m m 40459025 Dec 16 03:38 shared/HITS.pool.root.1
[2024-12-16 03:39:16]  *** Contents of shared directory: ***
[2024-12-16 03:39:16] total 391028
[2024-12-16 03:39:16] -rw-r--r-- 2 m m     17567 Dec 16 02:01 start_atlas.sh
[2024-12-16 03:39:16] -rw-r--r-- 2 m m    502810 Dec 16 02:01 input.tar.gz
[2024-12-16 03:39:16] -rw-r--r-- 2 m m 358150984 Dec 16 02:01 ATLAS.root_0
[2024-12-16 03:39:16] -rw------- 1 m m  40459025 Dec 16 03:38 HITS.pool.root.1
[2024-12-16 03:39:16] -rw------- 1 m m   1269760 Dec 16 03:39 result.tar.gz
03:39:18 (4057): run_atlas exited; CPU time 13375.856234
03:39:18 (4057): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN