Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2024-11-08 19:39:56 (21188): Detected: vboxwrapper 26206
2024-11-08 19:39:56 (21188): Detected: BOINC client v8.0.4
2024-11-08 19:39:57 (21188): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2024-11-08 19:39:57 (21188): Successfully copied 'init_data.xml' to the shared directory.
2024-11-08 19:39:57 (21188): Create VM. (boinc_926aab533cc6c800, slot#16)
2024-11-08 19:39:58 (21188): Setting Memory Size for VM. (4096MB)
2024-11-08 19:39:59 (21188): Setting CPU Count for VM. (1)
2024-11-08 19:39:59 (21188): Setting Chipset Options for VM.
2024-11-08 19:39:59 (21188): Setting Graphics Controller Options for VM.
2024-11-08 19:39:59 (21188): Setting Boot Options for VM.
2024-11-08 19:40:00 (21188): Setting Network Configuration for NAT.
2024-11-08 19:40:00 (21188): Enabling VM Network Access.
2024-11-08 19:40:00 (21188): Disabling USB Support for VM.
2024-11-08 19:40:01 (21188): Disabling COM Port Support for VM.
2024-11-08 19:40:01 (21188): Disabling LPT Port Support for VM.
2024-11-08 19:40:01 (21188): Disabling Audio Support for VM.
2024-11-08 19:40:01 (21188): Disabling Clipboard Support for VM.
2024-11-08 19:40:02 (21188): Disabling Drag and Drop Support for VM.
2024-11-08 19:40:02 (21188): Adding storage controller(s) to VM.
2024-11-08 19:40:02 (21188): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-11-08 19:40:03 (21188): Adding VirtualBox Guest Additions to VM.
2024-11-08 19:40:03 (21188): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-11-08 19:40:03 (21188): forwarding host port 62705 to guest port 80
2024-11-08 19:40:03 (21188): Enabling remote desktop for VM.
2024-11-08 19:40:04 (21188): Required extension pack not installed, remote desktop not enabled.
2024-11-08 19:40:04 (21188): Enabling shared directory for VM.
2024-11-08 19:40:04 (21188): Starting VM using VBoxManage interface. (boinc_926aab533cc6c800, slot#16)
2024-11-08 19:40:13 (21188): Successfully started VM. (PID = '34808')
2024-11-08 19:40:13 (21188): Reporting VM Process ID to BOINC.
2024-11-08 19:40:13 (21188): Guest Log: BIOS: VirtualBox 7.1.4
2024-11-08 19:40:13 (21188): Guest Log: CPUID EDX: 0x178bfbff
2024-11-08 19:40:13 (21188): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-11-08 19:40:13 (21188): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-11-08 19:40:13 (21188): VM state change detected. (old = 'poweredoff', new = 'running')
2024-11-08 19:40:13 (21188): Detected: Web Application Enabled (http://localhost:62705)
2024-11-08 19:40:13 (21188): Preference change detected
2024-11-08 19:40:13 (21188): Setting CPU throttle for VM. (100%)
2024-11-08 19:40:14 (21188): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-11-08 19:40:15 (21188): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-11-08 19:40:15 (21188): Guest Log: BIOS: Booting from Hard Disk...
2024-11-08 19:40:19 (21188): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-11-08 19:40:19 (21188): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-11-08 19:40:19 (21188): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-11-08 19:40:28 (21188): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-11-08 19:40:28 (21188): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-11-08 19:40:49 (21188): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-11-08 19:40:49 (21188): Guest Log: 00:00:00.000277 main     Log opened 2024-11-08T19:40:48.203932000Z
2024-11-08 19:40:49 (21188): Guest Log: 00:00:00.000529 main     OS Product: Linux
2024-11-08 19:40:49 (21188): Guest Log: 00:00:00.000589 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-11-08 19:40:49 (21188): Guest Log: 00:00:00.000638 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-11-08 19:40:49 (21188): Guest Log: 00:00:00.000688 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-11-08 19:40:49 (21188): Guest Log: 00:00:00.000690 main     Process ID: 1251
2024-11-08 19:40:49 (21188): Guest Log: 00:00:00.000691 main     Package type: LINUX_64BITS_GENERIC
2024-11-08 19:40:49 (21188): Guest Log: 00:00:00.021435 main     5.2.32 r132073 started. Verbose level = 0
2024-11-08 19:40:50 (21188): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-11-08 19:40:50 (21188): Guest Log: [INFO] Mounting shared directory
2024-11-08 19:40:50 (21188): Guest Log: [INFO] Checking for init_data.xml
2024-11-08 19:40:54 (21188): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-11-08 19:40:54 (21188): Guest Log: [INFO] Detected branch: prod
2024-11-08 19:40:55 (21188): Guest Log: This is the prod version of the ATLAS job wrapper
2024-11-08 19:40:55 (21188): Guest Log: Copying input files
2024-11-08 19:40:59 (21188): Guest Log: Copied input files into RunAtlas.
2024-11-08 19:40:59 (21188): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2024-11-08 19:40:59 (21188): Guest Log: 00:00:10.049053 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 421 718 000ns (GuestNow=1 731 091 259 829 488 000 ns GuestLast=1 731 094 848 251 206 000 ns fSetTimeLastLoop=true )
2024-11-08 19:41:09 (21188): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-11-08 19:41:09 (21188): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-11-08 19:41:09 (21188): Guest Log: 2.6.3.0 1521 0 31560 139250 4 1 3117281 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2024-11-08 19:41:12 (21188): Guest Log: copied the webapp to /var/www
2024-11-08 19:41:12 (21188): Guest Log: core_number=1
2024-11-08 19:41:12 (21188): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-11-08 19:41:12 (21188): Guest Log:  *** Starting ATLAS job. (PandaID=6395405065 taskID=41943600) ***
2024-11-08 20:00:43 (21188): Guest Log:  *** Job finished ***
2024-11-08 20:00:43 (21188): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:33,105 | INFO     | [job] control thread has finished
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:33,606 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:37,609 | INFO     | [data] queue_monitor thread has finished
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:37,978 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139702232344384)>', '<ExcThread(monitor, started 139701654644480)>']
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:38,978 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:38,978 | INFO     | [monitor] control thread has ended
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:42,984 | INFO     | all workflow threads have been joined
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:42,985 | INFO     | end of generic workflow (traces error code: 0)
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:42,985 | INFO     | traces error code: 0
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:42,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:43,071 [wrapper] ==== pilot stdout END ====
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:43,076 [wrapper] ==== wrapper stdout RESUME ====
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:43,082 [wrapper] pilotpid: 5813
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:43,088 [wrapper] Pilot exit status: 0
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:43,146 [wrapper] pandaids: 6395405065
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:43,177 [wrapper] cleanup supervisor_pilot 19037 5814
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:43,183 [wrapper] Test setup, not cleaning
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:43,190 [wrapper] ==== wrapper stdout END ====
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:43,195 [wrapper] ==== wrapper stderr END ====
2024-11-08 20:00:43 (21188): Guest Log: 2024-11-08 19:00:43,207 [wrapper] apfmon messages muted
2024-11-08 20:00:43 (21188): Guest Log:  *** Error codes and diagnostics ***
2024-11-08 20:00:43 (21188): Guest Log:     "exeErrorCode": 65,
2024-11-08 20:00:43 (21188): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL  *** *** Wrong ATLAS layout: ATLAS-R3S-2021-03-02-00 *** ***\"",
2024-11-08 20:00:43 (21188): Guest Log:     "pilotErrorCode": 1305,
2024-11-08 20:00:43 (21188): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-11-08 19:00:08,307 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL  *** *** Wro",
2024-11-08 20:00:43 (21188): Guest Log:  *** Listing of results directory ***
2024-11-08 20:00:43 (21188): Guest Log: total 4076
2024-11-08 20:00:43 (21188): Guest Log: -rw-r--r--. 1 atlas atlas  486088 Nov  8 15:49 pilot3.tar.gz
2024-11-08 20:00:43 (21188): Guest Log: -rwx------. 1 atlas atlas   34589 Nov  8 16:03 runpilot2-wrapper.sh
2024-11-08 20:00:43 (21188): Guest Log: -rw-r--r--. 1 atlas atlas    5652 Nov  8 16:03 queuedata.json
2024-11-08 20:00:43 (21188): Guest Log: -rwxr-xr-x. 1 atlas atlas    9309 Nov  8 18:40 init_data.xml
2024-11-08 20:00:43 (21188): Guest Log: -rwxr-xr-x. 1 atlas atlas  499791 Nov  8 18:40 input.tar.gz
2024-11-08 20:00:43 (21188): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Nov  8 18:40 start_atlas.sh
2024-11-08 20:00:43 (21188): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Nov  8 18:40 EVNT.41943596._000037.pool.root.1 -> /data/./ATLAS.root_0
2024-11-08 20:00:43 (21188): Guest Log: -rw-r--r--. 1 atlas atlas    2638 Nov  8 18:41 pandaJob.out
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas     460 Nov  8 18:41 setup.sh.local
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas 1011219 Nov  8 18:42 agis_schedconf.cvmfs.json
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas 1597102 Nov  8 18:42 agis_ddmendpoints.agis.ALL.json
2024-11-08 20:00:43 (21188): Guest Log: drwx------. 4 atlas atlas    4096 Nov  8 18:42 pilot3
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas      95 Nov  8 19:00 pilot_heartbeat.json
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas    1008 Nov  8 19:00 memory_monitor_summary.json
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas   51853 Nov  8 19:00 log.41943600._000546.job.log.tgz.1
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas   11271 Nov  8 19:00 heartbeat.json
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas    4275 Nov  8 19:00 pilotlog.txt
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas  149121 Nov  8 19:00 log.41943600._000546.job.log.1
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas     188 Nov  8 19:00 output.list
2024-11-08 20:00:43 (21188): Guest Log: -rw-r--r--. 1 atlas atlas     620 Nov  8 19:00 runtime_log
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas  225280 Nov  8 19:00 result.tar.gz
2024-11-08 20:00:43 (21188): Guest Log: -rw-r--r--. 1 atlas atlas   11015 Nov  8 19:00 runtime_log.err
2024-11-08 20:00:43 (21188): Guest Log: -rw-------. 1 atlas atlas     642 Nov  8 19:00 H73KDmndgT6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmAgPNDmIsjnvm.diag
2024-11-08 20:00:43 (21188): Guest Log: Looking for outputfile HITS.41943600._000546.pool.root.1
2024-11-08 20:00:43 (21188): Guest Log: No HITS file was produced
2024-11-08 20:00:43 (21188): Guest Log: Successfully finished the ATLAS job!
2024-11-08 20:00:43 (21188): Guest Log: Copying the results back to the shared directory!
2024-11-08 20:00:43 (21188): Guest Log:  *** Contents of shared directory: ***
2024-11-08 20:00:43 (21188): Guest Log: total 258120
2024-11-08 20:00:43 (21188): Guest Log: -rwxrwxrwx. 1 root root 263551329 Nov  8 18:39 ATLAS.root_0
2024-11-08 20:00:43 (21188): Guest Log: -rwxrwxrwx. 1 root root      9309 Nov  8 18:39 init_data.xml
2024-11-08 20:00:43 (21188): Guest Log: -rwxrwxrwx. 1 root root    499791 Nov  8 17:56 input.tar.gz
2024-11-08 20:00:43 (21188): Guest Log: -rwxrwxrwx. 1 root root    225280 Nov  8 19:00 result.tar.gz
2024-11-08 20:00:43 (21188): Guest Log: -rwxrwxrwx. 1 root root     17569 Nov  8 17:56 start_atlas.sh
2024-11-08 20:00:43 (21188): Guest Log:  *** Success! Shutting down the machine. ***
2024-11-08 20:00:43 (21188): VM Completion File Detected.
2024-11-08 20:00:43 (21188): Powering off VM.
2024-11-08 20:00:45 (21188): Successfully stopped VM.
2024-11-08 20:00:45 (21188): Deregistering VM. (boinc_926aab533cc6c800, slot#16)
2024-11-08 20:00:45 (21188): Removing network bandwidth throttle group from VM.
2024-11-08 20:00:45 (21188): Removing VM from VirtualBox.
20:00:50 (21188): called boinc_finish(0)

</stderr_txt>
]]>

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