Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2024-11-08 19:38:14 (31624): Detected: vboxwrapper 26206
2024-11-08 19:38:14 (31624): Detected: BOINC client v8.0.4
2024-11-08 19:38:14 (31624): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2024-11-08 19:38:15 (31624): Successfully copied 'init_data.xml' to the shared directory.
2024-11-08 19:38:15 (31624): Create VM. (boinc_8526df02bfbeb9af, slot#12)
2024-11-08 19:38:16 (31624): Setting Memory Size for VM. (4096MB)
2024-11-08 19:38:16 (31624): Setting CPU Count for VM. (1)
2024-11-08 19:38:16 (31624): Setting Chipset Options for VM.
2024-11-08 19:38:16 (31624): Setting Graphics Controller Options for VM.
2024-11-08 19:38:17 (31624): Setting Boot Options for VM.
2024-11-08 19:38:17 (31624): Setting Network Configuration for NAT.
2024-11-08 19:38:17 (31624): Enabling VM Network Access.
2024-11-08 19:38:18 (31624): Disabling USB Support for VM.
2024-11-08 19:38:18 (31624): Disabling COM Port Support for VM.
2024-11-08 19:38:18 (31624): Disabling LPT Port Support for VM.
2024-11-08 19:38:18 (31624): Disabling Audio Support for VM.
2024-11-08 19:38:19 (31624): Disabling Clipboard Support for VM.
2024-11-08 19:38:19 (31624): Disabling Drag and Drop Support for VM.
2024-11-08 19:38:19 (31624): Adding storage controller(s) to VM.
2024-11-08 19:38:19 (31624): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-11-08 19:38:20 (31624): Adding VirtualBox Guest Additions to VM.
2024-11-08 19:38:20 (31624): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-11-08 19:38:20 (31624): forwarding host port 62653 to guest port 80
2024-11-08 19:38:21 (31624): Enabling remote desktop for VM.
2024-11-08 19:38:21 (31624): Required extension pack not installed, remote desktop not enabled.
2024-11-08 19:38:21 (31624): Enabling shared directory for VM.
2024-11-08 19:38:21 (31624): Starting VM using VBoxManage interface. (boinc_8526df02bfbeb9af, slot#12)
2024-11-08 19:38:30 (31624): Successfully started VM. (PID = '31588')
2024-11-08 19:38:30 (31624): Reporting VM Process ID to BOINC.
2024-11-08 19:38:30 (31624): Guest Log: BIOS: VirtualBox 7.1.4
2024-11-08 19:38:30 (31624): Guest Log: CPUID EDX: 0x178bfbff
2024-11-08 19:38:30 (31624): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-11-08 19:38:30 (31624): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-11-08 19:38:30 (31624): VM state change detected. (old = 'poweredoff', new = 'running')
2024-11-08 19:38:30 (31624): Detected: Web Application Enabled (http://localhost:62653)
2024-11-08 19:38:30 (31624): Preference change detected
2024-11-08 19:38:30 (31624): Setting CPU throttle for VM. (100%)
2024-11-08 19:38:31 (31624): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-11-08 19:38:32 (31624): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-11-08 19:38:32 (31624): Guest Log: BIOS: Booting from Hard Disk...
2024-11-08 19:38:37 (31624): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-11-08 19:38:37 (31624): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-11-08 19:38:37 (31624): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-11-08 19:38:46 (31624): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-11-08 19:38:46 (31624): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-11-08 19:39:09 (31624): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-11-08 19:39:09 (31624): Guest Log: 00:00:00.000186 main     Log opened 2024-11-08T19:39:06.676618000Z
2024-11-08 19:39:09 (31624): Guest Log: 00:00:00.000337 main     OS Product: Linux
2024-11-08 19:39:09 (31624): Guest Log: 00:00:00.000369 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-11-08 19:39:09 (31624): Guest Log: 00:00:00.000394 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-11-08 19:39:09 (31624): Guest Log: 00:00:00.000432 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-11-08 19:39:09 (31624): Guest Log: 00:00:00.000433 main     Process ID: 1266
2024-11-08 19:39:09 (31624): Guest Log: 00:00:00.000434 main     Package type: LINUX_64BITS_GENERIC
2024-11-08 19:39:09 (31624): Guest Log: 00:00:00.037440 main     5.2.32 r132073 started. Verbose level = 0
2024-11-08 19:39:09 (31624): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-11-08 19:39:09 (31624): Guest Log: [INFO] Mounting shared directory
2024-11-08 19:39:09 (31624): Guest Log: [INFO] Checking for init_data.xml
2024-11-08 19:39:15 (31624): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-11-08 19:39:15 (31624): Guest Log: [INFO] Detected branch: prod
2024-11-08 19:39:15 (31624): Guest Log: This is the prod version of the ATLAS job wrapper
2024-11-08 19:39:15 (31624): Guest Log: Copying input files
2024-11-08 19:39:19 (31624): Guest Log: 00:00:10.086643 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 146 510 000ns (GuestNow=1 731 091 158 615 750 000 ns GuestLast=1 731 094 746 762 260 000 ns fSetTimeLastLoop=true )
2024-11-08 19:39:19 (31624): Guest Log: Copied input files into RunAtlas.
2024-11-08 19:39:19 (31624): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2024-11-08 19:39:29 (31624): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-11-08 19:39:30 (31624): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-11-08 19:39:30 (31624): Guest Log: 2.6.3.0 1535 0 31548 139250 4 1 3117281 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2024-11-08 19:39:32 (31624): Guest Log: copied the webapp to /var/www
2024-11-08 19:39:32 (31624): Guest Log: core_number=1
2024-11-08 19:39:32 (31624): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-11-08 19:39:32 (31624): Guest Log:  *** Starting ATLAS job. (PandaID=6395404971 taskID=41943600) ***
2024-11-08 20:08:07 (31624): Guest Log:  *** Job finished ***
2024-11-08 20:08:07 (31624): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:07:58,718 | INFO     | [job] create_data_payload thread has finished
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:07:58,718 | INFO     | [payload] execute_payloads thread has finished
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:00,418 | INFO     | [data] queue_monitor thread has finished
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:01,981 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139708304889664)>', '<ExcThread(monitor, started 139707988023040)>']
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:02,427 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:02,427 | INFO     | [monitor] control thread has ended
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:06,987 | INFO     | all workflow threads have been joined
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:06,987 | INFO     | end of generic workflow (traces error code: 0)
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:06,987 | INFO     | traces error code: 0
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:06,987 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:07,089 [wrapper] ==== pilot stdout END ====
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:07,095 [wrapper] ==== wrapper stdout RESUME ====
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:07,100 [wrapper] pilotpid: 5827
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:07,106 [wrapper] Pilot exit status: 0
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:07,165 [wrapper] pandaids: 6395404971
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:07,213 [wrapper] cleanup supervisor_pilot 19050 5828
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:07,222 [wrapper] Test setup, not cleaning
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:07,228 [wrapper] ==== wrapper stdout END ====
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:07,238 [wrapper] ==== wrapper stderr END ====
2024-11-08 20:08:07 (31624): Guest Log: 2024-11-08 19:08:07,257 [wrapper] apfmon messages muted
2024-11-08 20:08:07 (31624): Guest Log:  *** Error codes and diagnostics ***
2024-11-08 20:08:07 (31624): Guest Log:     "exeErrorCode": 65,
2024-11-08 20:08:07 (31624): Guest Log:     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
2024-11-08 20:08:07 (31624): Guest Log:     "pilotErrorCode": 1305,
2024-11-08 20:08:07 (31624): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-11-08 19:05:36,642 CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"",
2024-11-08 20:08:07 (31624): Guest Log:  *** Listing of results directory ***
2024-11-08 20:08:07 (31624): Guest Log: total 4196
2024-11-08 20:08:07 (31624): Guest Log: -rw-r--r--. 1 atlas atlas  486088 Nov  8 15:49 pilot3.tar.gz
2024-11-08 20:08:07 (31624): Guest Log: -rw-r--r--. 1 atlas atlas    5652 Nov  8 16:02 queuedata.json
2024-11-08 20:08:07 (31624): Guest Log: -rwx------. 1 atlas atlas   34589 Nov  8 16:02 runpilot2-wrapper.sh
2024-11-08 20:08:07 (31624): Guest Log: -rwxr-xr-x. 1 atlas atlas    9309 Nov  8 18:39 init_data.xml
2024-11-08 20:08:07 (31624): Guest Log: -rwxr-xr-x. 1 atlas atlas  499789 Nov  8 18:39 input.tar.gz
2024-11-08 20:08:07 (31624): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Nov  8 18:39 start_atlas.sh
2024-11-08 20:08:07 (31624): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Nov  8 18:39 EVNT.41943596._000034.pool.root.1 -> /data/./ATLAS.root_0
2024-11-08 20:08:07 (31624): Guest Log: -rw-r--r--. 1 atlas atlas    2637 Nov  8 18:39 pandaJob.out
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas     460 Nov  8 18:39 setup.sh.local
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas 1011219 Nov  8 18:40 agis_schedconf.cvmfs.json
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas 1597102 Nov  8 18:40 agis_ddmendpoints.agis.ALL.json
2024-11-08 20:08:07 (31624): Guest Log: drwx------. 4 atlas atlas    4096 Nov  8 18:40 pilot3
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas    1018 Nov  8 19:05 memory_monitor_summary.json
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas   65678 Nov  8 19:05 log.41943600._000452.job.log.tgz.1
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas      95 Nov  8 19:07 pilot_heartbeat.json
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas   10493 Nov  8 19:07 heartbeat.json
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas    4584 Nov  8 19:08 pilotlog.txt
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas  195884 Nov  8 19:08 log.41943600._000452.job.log.1
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas     188 Nov  8 19:08 output.list
2024-11-08 20:08:07 (31624): Guest Log: -rw-r--r--. 1 atlas atlas     620 Nov  8 19:08 runtime_log
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas  286720 Nov  8 19:08 result.tar.gz
2024-11-08 20:08:07 (31624): Guest Log: -rw-r--r--. 1 atlas atlas   11015 Nov  8 19:08 runtime_log.err
2024-11-08 20:08:07 (31624): Guest Log: -rw-------. 1 atlas atlas     645 Nov  8 19:08 cNsMDmycgT6n9Rq4apOajLDm4fhM0noT9bVorHsSDmVj7LDmkhUfYn.diag
2024-11-08 20:08:07 (31624): Guest Log: Looking for outputfile HITS.41943600._000452.pool.root.1
2024-11-08 20:08:08 (31624): Guest Log: No HITS file was produced
2024-11-08 20:08:08 (31624): Guest Log: Successfully finished the ATLAS job!
2024-11-08 20:08:08 (31624): Guest Log: Copying the results back to the shared directory!
2024-11-08 20:08:08 (31624): Guest Log:  *** Contents of shared directory: ***
2024-11-08 20:08:08 (31624): Guest Log: total 258660
2024-11-08 20:08:08 (31624): Guest Log: -rwxrwxrwx. 1 root root 264042592 Nov  8 18:38 ATLAS.root_0
2024-11-08 20:08:08 (31624): Guest Log: -rwxrwxrwx. 1 root root      9309 Nov  8 18:38 init_data.xml
2024-11-08 20:08:08 (31624): Guest Log: -rwxrwxrwx. 1 root root    499789 Nov  8 17:48 input.tar.gz
2024-11-08 20:08:08 (31624): Guest Log: -rwxrwxrwx. 1 root root    286720 Nov  8 19:08 result.tar.gz
2024-11-08 20:08:08 (31624): Guest Log: -rwxrwxrwx. 1 root root     17569 Nov  8 17:48 start_atlas.sh
2024-11-08 20:08:08 (31624): Guest Log:  *** Success! Shutting down the machine. ***
2024-11-08 20:08:08 (31624): VM Completion File Detected.
2024-11-08 20:08:08 (31624): Powering off VM.
2024-11-08 20:08:09 (31624): Successfully stopped VM.
2024-11-08 20:08:09 (31624): Deregistering VM. (boinc_8526df02bfbeb9af, slot#12)
2024-11-08 20:08:09 (31624): Removing network bandwidth throttle group from VM.
2024-11-08 20:08:09 (31624): Removing VM from VirtualBox.
20:08:15 (31624): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN