Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
2024-11-08 19:26:04 (25864): Detected: vboxwrapper 26206
2024-11-08 19:26:04 (25864): Detected: BOINC client v8.0.4
2024-11-08 19:26:05 (25864): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2024-11-08 19:26:05 (25864): Successfully copied 'init_data.xml' to the shared directory.
2024-11-08 19:26:06 (25864): Create VM. (boinc_4705595bf5531029, slot#10)
2024-11-08 19:26:06 (25864): Setting Memory Size for VM. (4096MB)
2024-11-08 19:26:06 (25864): Setting CPU Count for VM. (1)
2024-11-08 19:26:07 (25864): Setting Chipset Options for VM.
2024-11-08 19:26:07 (25864): Setting Graphics Controller Options for VM.
2024-11-08 19:26:07 (25864): Setting Boot Options for VM.
2024-11-08 19:26:08 (25864): Setting Network Configuration for NAT.
2024-11-08 19:26:08 (25864): Enabling VM Network Access.
2024-11-08 19:26:08 (25864): Disabling USB Support for VM.
2024-11-08 19:26:09 (25864): Disabling COM Port Support for VM.
2024-11-08 19:26:09 (25864): Disabling LPT Port Support for VM.
2024-11-08 19:26:09 (25864): Disabling Audio Support for VM.
2024-11-08 19:26:09 (25864): Disabling Clipboard Support for VM.
2024-11-08 19:26:10 (25864): Disabling Drag and Drop Support for VM.
2024-11-08 19:26:10 (25864): Adding storage controller(s) to VM.
2024-11-08 19:26:10 (25864): Adding virtual disk drive to VM. (ATLAS_vbox_3.01_image.vdi)
2024-11-08 19:26:11 (25864): Adding VirtualBox Guest Additions to VM.
2024-11-08 19:26:11 (25864): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2024-11-08 19:26:11 (25864): forwarding host port 62234 to guest port 80
2024-11-08 19:26:11 (25864): Enabling remote desktop for VM.
2024-11-08 19:26:12 (25864): Required extension pack not installed, remote desktop not enabled.
2024-11-08 19:26:12 (25864): Enabling shared directory for VM.
2024-11-08 19:26:12 (25864): Starting VM using VBoxManage interface. (boinc_4705595bf5531029, slot#10)
2024-11-08 19:26:21 (25864): Successfully started VM. (PID = '28976')
2024-11-08 19:26:21 (25864): Reporting VM Process ID to BOINC.
2024-11-08 19:26:21 (25864): Guest Log: BIOS: VirtualBox 7.1.4
2024-11-08 19:26:21 (25864): Guest Log: CPUID EDX: 0x178bfbff
2024-11-08 19:26:21 (25864): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2024-11-08 19:26:21 (25864): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2024-11-08 19:26:21 (25864): VM state change detected. (old = 'poweredoff', new = 'running')
2024-11-08 19:26:21 (25864): Detected: Web Application Enabled (http://localhost:62234)
2024-11-08 19:26:21 (25864): Preference change detected
2024-11-08 19:26:21 (25864): Setting CPU throttle for VM. (100%)
2024-11-08 19:26:22 (25864): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2024-11-08 19:26:23 (25864): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2024-11-08 19:26:23 (25864): Guest Log: BIOS: Booting from Hard Disk...
2024-11-08 19:26:27 (25864): Guest Log: BIOS: KBD: unsupported int 16h function 03
2024-11-08 19:26:27 (25864): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2024-11-08 19:26:27 (25864): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2024-11-08 19:26:35 (25864): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2024-11-08 19:26:35 (25864): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2024-11-08 19:26:58 (25864): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2024-11-08 19:26:58 (25864): Guest Log: 00:00:00.000287 main     Log opened 2024-11-08T19:26:56.326469000Z
2024-11-08 19:26:58 (25864): Guest Log: 00:00:00.000548 main     OS Product: Linux
2024-11-08 19:26:58 (25864): Guest Log: 00:00:00.000626 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2024-11-08 19:26:58 (25864): Guest Log: 00:00:00.000688 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2024-11-08 19:26:58 (25864): Guest Log: 00:00:00.000752 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2024-11-08 19:26:58 (25864): Guest Log: 00:00:00.000753 main     Process ID: 1249
2024-11-08 19:26:58 (25864): Guest Log: 00:00:00.000755 main     Package type: LINUX_64BITS_GENERIC
2024-11-08 19:26:58 (25864): Guest Log: 00:00:00.043511 main     5.2.32 r132073 started. Verbose level = 0
2024-11-08 19:26:58 (25864): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2024-11-08 19:26:58 (25864): Guest Log: [INFO] Mounting shared directory
2024-11-08 19:26:58 (25864): Guest Log: [INFO] Checking for init_data.xml
2024-11-08 19:27:08 (25864): Guest Log: 00:00:10.120931 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 292 050 000ns (GuestNow=1 731 090 428 153 514 000 ns GuestLast=1 731 094 016 445 564 000 ns fSetTimeLastLoop=true )
2024-11-08 19:27:15 (25864): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2024-11-08 19:27:15 (25864): Guest Log: [INFO] Detected branch: prod
2024-11-08 19:27:16 (25864): Guest Log: This is the prod version of the ATLAS job wrapper
2024-11-08 19:27:16 (25864): Guest Log: Copying input files
2024-11-08 19:27:20 (25864): Guest Log: Copied input files into RunAtlas.
2024-11-08 19:27:21 (25864): Guest Log: Detected user-configured HTTP proxy at http://192.168.1.179:3128 - will set in /etc/cvmfs/default.local
2024-11-08 19:27:30 (25864): Guest Log: Running cvmfs_config stat atlas.cern.ch
2024-11-08 19:27:31 (25864): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2024-11-08 19:27:31 (25864): Guest Log: 2.6.3.0 1541 0 29524 139250 3 1 3117281 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.1.179:3128 1
2024-11-08 19:27:33 (25864): Guest Log: copied the webapp to /var/www
2024-11-08 19:27:33 (25864): Guest Log: core_number=1
2024-11-08 19:27:34 (25864): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2024-11-08 19:27:34 (25864): Guest Log:  *** Starting ATLAS job. (PandaID=6395747461 taskID=41944689) ***
2024-11-08 20:00:56 (25864): Guest Log:  *** Job finished ***
2024-11-08 20:00:56 (25864): Guest Log:  *** The last 20 lines of the pilot log: ***
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:43,980 | INFO     | [job] create_data_payload thread has finished
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:44,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:48,472 | INFO     | [data] queue_monitor thread has finished
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:50,541 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140255151114048)>', '<ExcThread(monitor, started 140254572967680)>']
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:50,844 | WARNING  | job_aborted has been set - aborting pilot monitoring
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:50,844 | INFO     | [monitor] control thread has ended
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,547 | INFO     | all workflow threads have been joined
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,547 | INFO     | end of generic workflow (traces error code: 0)
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,547 | INFO     | traces error code: 0
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,547 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,679 [wrapper] ==== pilot stdout END ====
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,684 [wrapper] ==== wrapper stdout RESUME ====
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,687 [wrapper] pilotpid: 5831
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,691 [wrapper] Pilot exit status: 0
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,754 [wrapper] pandaids: 6395747461
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,784 [wrapper] cleanup supervisor_pilot 19729 5832
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,790 [wrapper] Test setup, not cleaning
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,796 [wrapper] ==== wrapper stdout END ====
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,801 [wrapper] ==== wrapper stderr END ====
2024-11-08 20:00:56 (25864): Guest Log: 2024-11-08 19:00:55,812 [wrapper] apfmon messages muted
2024-11-08 20:00:56 (25864): Guest Log:  *** Error codes and diagnostics ***
2024-11-08 20:00:56 (25864): Guest Log:     "exeErrorCode": 65,
2024-11-08 20:00:56 (25864): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL in sysInitialize(): standard std::exception is caught\"",
2024-11-08 20:00:56 (25864): Guest Log:     "pilotErrorCode": 1305,
2024-11-08 20:00:56 (25864): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute 2024-11-08 18:58:29,995 CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"GeoModelSvc                                                      FATAL in sysInitia",
2024-11-08 20:00:56 (25864): Guest Log:  *** Listing of results directory ***
2024-11-08 20:00:56 (25864): Guest Log: total 4236
2024-11-08 20:00:56 (25864): Guest Log: -rw-r--r--. 1 atlas atlas  486088 Nov  8 15:28 pilot3.tar.gz
2024-11-08 20:00:56 (25864): Guest Log: -rwx------. 1 atlas atlas   34589 Nov  8 15:40 runpilot2-wrapper.sh
2024-11-08 20:00:56 (25864): Guest Log: -rw-r--r--. 1 atlas atlas    5652 Nov  8 15:40 queuedata.json
2024-11-08 20:00:56 (25864): Guest Log: -rwxr-xr-x. 1 atlas atlas    9309 Nov  8 18:27 init_data.xml
2024-11-08 20:00:56 (25864): Guest Log: -rwxr-xr-x. 1 atlas atlas  499792 Nov  8 18:27 input.tar.gz
2024-11-08 20:00:56 (25864): Guest Log: -rwxr-xr-x. 1 atlas atlas   17569 Nov  8 18:27 start_atlas.sh
2024-11-08 20:00:56 (25864): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Nov  8 18:27 EVNT.41944686._000096.pool.root.1 -> /data/./ATLAS.root_0
2024-11-08 20:00:56 (25864): Guest Log: -rw-r--r--. 1 atlas atlas    2627 Nov  8 18:27 pandaJob.out
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas     460 Nov  8 18:27 setup.sh.local
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas 1011219 Nov  8 18:28 agis_schedconf.cvmfs.json
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas 1597102 Nov  8 18:28 agis_ddmendpoints.agis.ALL.json
2024-11-08 20:00:56 (25864): Guest Log: drwx------. 4 atlas atlas    4096 Nov  8 18:28 pilot3
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas    1013 Nov  8 18:58 memory_monitor_summary.json
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas   61475 Nov  8 18:58 log.41944689._003609.job.log.tgz.1
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas      95 Nov  8 19:00 pilot_heartbeat.json
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas   10075 Nov  8 19:00 heartbeat.json
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas    4275 Nov  8 19:00 pilotlog.txt
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas  220738 Nov  8 19:00 log.41944689._003609.job.log.1
2024-11-08 20:00:56 (25864): Guest Log: -rw-r--r--. 1 atlas atlas     620 Nov  8 19:00 runtime_log
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas  307200 Nov  8 19:00 result.tar.gz
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas     188 Nov  8 19:00 output.list
2024-11-08 20:00:56 (25864): Guest Log: -rw-r--r--. 1 atlas atlas   11015 Nov  8 19:00 runtime_log.err
2024-11-08 20:00:56 (25864): Guest Log: -rw-------. 1 atlas atlas     642 Nov  8 19:00 3GkLDmpGgT6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDmnbPNDm5XgMQm.diag
2024-11-08 20:00:56 (25864): Guest Log: Looking for outputfile HITS.41944689._003609.pool.root.1
2024-11-08 20:00:56 (25864): Guest Log: No HITS file was produced
2024-11-08 20:00:56 (25864): Guest Log: Successfully finished the ATLAS job!
2024-11-08 20:00:56 (25864): Guest Log: Copying the results back to the shared directory!
2024-11-08 20:00:56 (25864): Guest Log:  *** Contents of shared directory: ***
2024-11-08 20:00:56 (25864): Guest Log: total 262248
2024-11-08 20:00:56 (25864): Guest Log: -rwxrwxrwx. 1 root root 267694964 Nov  8 18:26 ATLAS.root_0
2024-11-08 20:00:56 (25864): Guest Log: -rwxrwxrwx. 1 root root      9309 Nov  8 18:26 init_data.xml
2024-11-08 20:00:56 (25864): Guest Log: -rwxrwxrwx. 1 root root    499792 Nov  8 17:23 input.tar.gz
2024-11-08 20:00:56 (25864): Guest Log: -rwxrwxrwx. 1 root root    307200 Nov  8 19:00 result.tar.gz
2024-11-08 20:00:56 (25864): Guest Log: -rwxrwxrwx. 1 root root     17569 Nov  8 17:23 start_atlas.sh
2024-11-08 20:00:56 (25864): Guest Log:  *** Success! Shutting down the machine. ***
2024-11-08 20:00:56 (25864): VM Completion File Detected.
2024-11-08 20:00:56 (25864): Powering off VM.
2024-11-08 20:00:58 (25864): Successfully stopped VM.
2024-11-08 20:00:58 (25864): Deregistering VM. (boinc_4705595bf5531029, slot#10)
2024-11-08 20:00:58 (25864): Removing network bandwidth throttle group from VM.
2024-11-08 20:00:58 (25864): Removing VM from VirtualBox.
20:01:03 (25864): called boinc_finish(0)

</stderr_txt>
]]>

©2024 CERN