Stderr output

<core_client_version>7.16.6</core_client_version>
<![CDATA[
<stderr_txt>
09:43:56 (2311629): wrapper (7.7.26015): starting
09:43:56 (2311629): wrapper: running run_atlas (--nthreads 12)
[2024-11-08 09:43:56] Arguments: --nthreads 12
[2024-11-08 09:43:56] Threads: 12
[2024-11-08 09:43:56] Checking for CVMFS
[2024-11-08 09:43:56] Probing /cvmfs/atlas.cern.ch... OK
[2024-11-08 09:43:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2024-11-08 09:43:57] Running cvmfs_config stat atlas.cern.ch
[2024-11-08 09:43:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2024-11-08 09:43:57] 2.11.5.0 2308668 0 30172 139243 3 12 4185856 4194304 20 130560 0 5920 99.839 57326 17376 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.150.1:3128 1
[2024-11-08 09:43:57] CVMFS is ok
[2024-11-08 09:43:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2024-11-08 09:43:57] Checking for apptainer binary...
[2024-11-08 09:43:57] apptainer is not installed, using version from CVMFS
[2024-11-08 09:43:57] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2024-11-08 09:43:57] Trebeth
[2024-11-08 09:43:57] apptainer works
[2024-11-08 09:43:57] Set ATHENA_PROC_NUMBER=12
[2024-11-08 09:43:57] Set ATHENA_CORE_NUMBER=12
[2024-11-08 09:43:57] Starting ATLAS job with PandaID=6395538635
[2024-11-08 09:43:57] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2024-11-08 10:43:48]  *** The last 200 lines of the pilot log: ***
[2024-11-08 10:43:48]  domain=
[2024-11-08 10:43:48]  filesize=361036
[2024-11-08 10:43:48]  filetype=log
[2024-11-08 10:43:48]  guid=3791cd7e-e20a-4ddd-8687-f1f88920ce21
[2024-11-08 10:43:48]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2024-11-08 10:43:48]  is_altstaged=None
[2024-11-08 10:43:48]  is_tar=False
[2024-11-08 10:43:48]  lfn=log.41944689._002871.job.log.tgz.1
[2024-11-08 10:43:48]  mtime=0
[2024-11-08 10:43:48]  protocol_id=None
[2024-11-08 10:43:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2024-11-08 10:43:48]  replicas=None
[2024-11-08 10:43:48]  scope=mc23_13p6TeV
[2024-11-08 10:43:48]  status=None
[2024-11-08 10:43:48]  status_code=0
[2024-11-08 10:43:48]  storage_token=
[2024-11-08 10:43:48]  surl=/var/lib/boinc-client/slots/2/PanDA_Pilot-6395538635/log.41944689._002871.job.log.tgz.1
[2024-11-08 10:43:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/28/log.41944689._002871.job.log.tgz.1
[2024-11-08 10:43:48]  workdir=None
[2024-11-08 10:43:48] ]
[2024-11-08 10:43:48] 2024-11-08 15:43:17,033 | INFO     | transferring file log.41944689._002871.job.log.tgz.1 from /var/lib/boinc-client/slots/2/PanDA_Pilot-6395538635/log.41944689._002871.job.log.tgz.1 to /var/lib/boinc
[2024-11-08 10:43:48] 2024-11-08 15:43:17,033 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc-client/slots/2/PanDA_Pilot-6395538635/log.41944689._002871.job.log.tgz.1 /var/lib/boinc-client/slots/2/log.419446
[2024-11-08 10:43:48] 2024-11-08 15:43:17,051 | INFO     | adding to output.list: log.41944689._002871.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/60/28/log.41944689._002871.job.log.tg
[2024-11-08 10:43:48] 2024-11-08 15:43:17,053 | INFO     | alt stage-out settings: ['pl', 'pw', 'w', 'default'], is_unified=False, altstageout=False, remain_files=0, has_altstorage=True
[2024-11-08 10:43:48] 2024-11-08 15:43:17,053 | INFO     | summary of transferred files:
[2024-11-08 10:43:48] 2024-11-08 15:43:17,053 | INFO     |  -- lfn=log.41944689._002871.job.log.tgz.1, status_code=0, status=transferred
[2024-11-08 10:43:48] 2024-11-08 15:43:17,053 | INFO     | stage-out finished correctly
[2024-11-08 10:43:48] 2024-11-08 15:43:20,574 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2024-11-08 10:43:48] 2024-11-08 15:43:20,630 | INFO     | job 6395538635 has state=finished
[2024-11-08 10:43:48] 2024-11-08 15:43:20,630 | INFO     | preparing for final server update for job 6395538635 in state='finished'
[2024-11-08 10:43:48] 2024-11-08 15:43:20,631 | INFO     | this job has now completed (state=finished)
[2024-11-08 10:43:48] 2024-11-08 15:43:20,631 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2024-11-08 10:43:48] 2024-11-08 15:43:20,631 | INFO     | log transfer has been attempted: DONE
[2024-11-08 10:43:48] 2024-11-08 15:43:20,631 | INFO     | job 6395538635 has finished - writing final server update
[2024-11-08 10:43:48] 2024-11-08 15:43:20,632 | INFO     | total number of processed events: 400 (read)
[2024-11-08 10:43:48] 2024-11-08 15:43:20,655 | INFO     | executing command: lscpu
[2024-11-08 10:43:48] 2024-11-08 15:43:20,712 | INFO     | found 28 cores (14 cores per socket, 2 sockets)
[2024-11-08 10:43:48] 2024-11-08 15:43:20,756 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2024-11-08 10:43:48] 2024-11-08 15:43:27,329 | INFO     | CPU arch script returned: x86-64-v3
[2024-11-08 10:43:48] 2024-11-08 15:43:27,330 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6395538635/memory_monitor_summary.json (trf name=prmon)
[2024-11-08 10:43:48] 2024-11-08 15:43:27,336 | INFO     | extracted standard info from prmon json
[2024-11-08 10:43:48] 2024-11-08 15:43:27,337 | INFO     | extracted standard memory fields from prmon json
[2024-11-08 10:43:48] 2024-11-08 15:43:27,337 | WARNING  | GPU info not found in prmon json: 'gpu'
[2024-11-08 10:43:48] 2024-11-08 15:43:27,338 | WARNING  | format EVNTtoHITS has no such key: dbData
[2024-11-08 10:43:48] 2024-11-08 15:43:27,338 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2024-11-08 10:43:48] 2024-11-08 15:43:27,340 | INFO     | fitting pss+swap vs Time
[2024-11-08 10:43:48] 2024-11-08 15:43:27,340 | INFO     | model: linear, x: [1731077381.0, 1731077442.0, 1731077503.0, 1731077564.0, 1731077625.0, 1731077686.0, 1731077747.0, 1731077808.0, 1731077869.0, 1731077930.0, 1731
[2024-11-08 10:43:48] 2024-11-08 15:43:27,340 | INFO     | sum of square deviations: 41117050.0
[2024-11-08 10:43:48] 2024-11-08 15:43:27,341 | INFO     | sum of deviations: 11922048376.000002
[2024-11-08 10:43:48] 2024-11-08 15:43:27,341 | INFO     | mean x: 1731078906.0
[2024-11-08 10:43:48] 2024-11-08 15:43:27,341 | INFO     | mean y: 2574809.862745098
[2024-11-08 10:43:48] 2024-11-08 15:43:27,341 | INFO     | -- intersect: -501930478753.20074
[2024-11-08 10:43:48] 2024-11-08 15:43:27,341 | INFO     | intersect: -501930478753.20074
[2024-11-08 10:43:48] 2024-11-08 15:43:27,341 | INFO     | chi2: 1.5010354077034191
[2024-11-08 10:43:48] 2024-11-08 15:43:27,341 | INFO     | -- intersect: -501930478753.20074
[2024-11-08 10:43:48] 2024-11-08 15:43:27,341 | INFO     | current memory leak: 289.95 B/s (using 51 data points, chi2=1.50)
[2024-11-08 10:43:48] 2024-11-08 15:43:27,341 | INFO     | ..............................
[2024-11-08 10:43:48] 2024-11-08 15:43:27,342 | INFO     | . Timing measurements:
[2024-11-08 10:43:48] 2024-11-08 15:43:27,342 | INFO     | . get job = 0 s
[2024-11-08 10:43:48] 2024-11-08 15:43:27,342 | INFO     | . initial setup = 2 s
[2024-11-08 10:43:48] 2024-11-08 15:43:27,342 | INFO     | . payload setup = 11 s
[2024-11-08 10:43:48] 2024-11-08 15:43:27,342 | INFO     | . stage-in = 0 s
[2024-11-08 10:43:48] 2024-11-08 15:43:27,342 | INFO     | . payload execution = 3520 s
[2024-11-08 10:43:48] 2024-11-08 15:43:27,342 | INFO     | . stage-out = 0 s
[2024-11-08 10:43:48] 2024-11-08 15:43:27,342 | INFO     | . log creation = 0 s
[2024-11-08 10:43:48] 2024-11-08 15:43:27,342 | INFO     | ..............................
[2024-11-08 10:43:48] 2024-11-08 15:43:27,399 | INFO     | 
[2024-11-08 10:43:48] 2024-11-08 15:43:27,400 | INFO     | job summary report
[2024-11-08 10:43:48] 2024-11-08 15:43:27,405 | INFO     | --------------------------------------------------
[2024-11-08 10:43:48] 2024-11-08 15:43:27,412 | INFO     | PanDA job id: 6395538635
[2024-11-08 10:43:48] 2024-11-08 15:43:27,412 | WARNING  | process 2330743 is no longer using CPU - aborting
[2024-11-08 10:43:48] 2024-11-08 15:43:27,412 | INFO     | task id: 41944689
[2024-11-08 10:43:48] 2024-11-08 15:43:27,412 | INFO     | aborting job monitoring since job object (job id=6395538635) has expired
[2024-11-08 10:43:48] 2024-11-08 15:43:27,412 | INFO     | errors: (none)
[2024-11-08 10:43:48] 2024-11-08 15:43:27,413 | INFO     | status: LOG_TRANSFER = DONE 
[2024-11-08 10:43:48] 2024-11-08 15:43:27,413 | INFO     | pilot state: finished 
[2024-11-08 10:43:48] 2024-11-08 15:43:27,413 | INFO     | transexitcode: 0
[2024-11-08 10:43:48] 2024-11-08 15:43:27,413 | INFO     | exeerrorcode: 0
[2024-11-08 10:43:48] 2024-11-08 15:43:27,413 | INFO     | exeerrordiag: 
[2024-11-08 10:43:48] 2024-11-08 15:43:27,413 | INFO     | exitcode: 0
[2024-11-08 10:43:48] 2024-11-08 15:43:27,413 | INFO     | exitmsg: OK
[2024-11-08 10:43:48] 2024-11-08 15:43:27,413 | INFO     | cpuconsumptiontime: 30422 s
[2024-11-08 10:43:48] 2024-11-08 15:43:27,414 | INFO     | nevents: 400
[2024-11-08 10:43:48] 2024-11-08 15:43:27,414 | INFO     | neventsw: 0
[2024-11-08 10:43:48] 2024-11-08 15:43:27,414 | INFO     | pid: 2330743
[2024-11-08 10:43:48] 2024-11-08 15:43:27,414 | INFO     | pgrp: 2330743
[2024-11-08 10:43:48] 2024-11-08 15:43:27,414 | INFO     | corecount: 12
[2024-11-08 10:43:48] 2024-11-08 15:43:27,414 | INFO     | event service: False
[2024-11-08 10:43:48] 2024-11-08 15:43:27,414 | INFO     | sizes: {0: 2404500, 4: 2404706, 11: 2404734, 3535: 2430231, 3536: 2439269, 3539: 2439325, 3546: 2439623}
[2024-11-08 10:43:48] 2024-11-08 15:43:27,414 | INFO     | --------------------------------------------------
[2024-11-08 10:43:48] 2024-11-08 15:43:27,414 | INFO     | 
[2024-11-08 10:43:48] 2024-11-08 15:43:27,414 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2024-11-08 10:43:48] 2024-11-08 15:43:27,433 | INFO     | queue jobs had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,434 | INFO     | queue payloads had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,434 | INFO     | queue data_in had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,434 | INFO     | queue data_out had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,434 | INFO     | queue current_data_in had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,434 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,434 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,434 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,434 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,435 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,435 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,435 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,435 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,435 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,435 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,435 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,435 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,435 | INFO     | queue completed_jobids has 1 job(s)
[2024-11-08 10:43:48] 2024-11-08 15:43:27,436 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,436 | INFO     | queue messages had 0 job(s) [purged]
[2024-11-08 10:43:48] 2024-11-08 15:43:27,436 | INFO     | job 6395538635 has completed (purged errors)
[2024-11-08 10:43:48] 2024-11-08 15:43:27,436 | INFO     | overall cleanup function is called
[2024-11-08 10:43:48] 2024-11-08 15:43:28,442 | INFO     | --- collectZombieJob: --- 10, [2330743]
[2024-11-08 10:43:48] 2024-11-08 15:43:28,442 | INFO     | zombie collector waiting for pid 2330743
[2024-11-08 10:43:48] 2024-11-08 15:43:28,442 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2024-11-08 10:43:48] 2024-11-08 15:43:28,442 | INFO     | collected zombie processes
[2024-11-08 10:43:48] 2024-11-08 15:43:28,442 | INFO     | will attempt to kill all subprocesses of pid=2330743
[2024-11-08 10:43:48] 2024-11-08 15:43:28,523 | INFO     | process IDs to be killed: [2330743] (in reverse order)
[2024-11-08 10:43:48] 2024-11-08 15:43:28,597 | WARNING  | found no corresponding commands to process id(s)
[2024-11-08 10:43:48] 2024-11-08 15:43:28,597 | INFO     | Do not look for orphan processes in BOINC jobs
[2024-11-08 10:43:48] 2024-11-08 15:43:28,604 | INFO     | did not find any defunct processes belonging to 2330743
[2024-11-08 10:43:48] 2024-11-08 15:43:28,607 | INFO     | did not find any defunct processes belonging to 2330743
[2024-11-08 10:43:48] 2024-11-08 15:43:28,607 | INFO     | ready for new job
[2024-11-08 10:43:48] 2024-11-08 15:43:28,607 | INFO     | pilot has finished with previous job - re-establishing logging
[2024-11-08 10:43:48] 2024-11-08 15:43:28,608 | INFO     | **************************************
[2024-11-08 10:43:48] 2024-11-08 15:43:28,608 | INFO     | ***  PanDA Pilot version 3.9.1.13  ***
[2024-11-08 10:43:48] 2024-11-08 15:43:28,608 | INFO     | **************************************
[2024-11-08 10:43:48] 2024-11-08 15:43:28,608 | INFO     | 
[2024-11-08 10:43:48] 2024-11-08 15:43:28,629 | INFO     | architecture information:
[2024-11-08 10:43:48] 2024-11-08 15:43:28,630 | INFO     | executing command: cat /etc/os-release
[2024-11-08 10:43:48] 2024-11-08 15:43:28,646 | INFO     | cat /etc/os-release:
[2024-11-08 10:43:48] NAME="CentOS Linux"
[2024-11-08 10:43:48] VERSION="7 (Core)"
[2024-11-08 10:43:48] ID="centos"
[2024-11-08 10:43:48] ID_LIKE="rhel fedora"
[2024-11-08 10:43:48] VERSION_ID="7"
[2024-11-08 10:43:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2024-11-08 10:43:48] ANSI_COLOR="0;31"
[2024-11-08 10:43:48] CPE_NAME="cpe:/o:centos:centos:7"
[2024-11-08 10:43:48] HOME_URL="https://www.centos.org/"
[2024-11-08 10:43:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2024-11-08 10:43:48] 
[2024-11-08 10:43:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2024-11-08 10:43:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2024-11-08 10:43:48] REDHAT_SUPPORT_PRODUCT="centos"
[2024-11-08 10:43:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2024-11-08 10:43:48] 
[2024-11-08 10:43:48] 2024-11-08 15:43:28,647 | INFO     | **************************************
[2024-11-08 10:43:48] 2024-11-08 15:43:29,150 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2024-11-08 10:43:48] 2024-11-08 15:43:29,171 | INFO     | sufficient remaining disk space (399445590016 B)
[2024-11-08 10:43:48] 2024-11-08 15:43:29,171 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2024-11-08 10:43:48] 2024-11-08 15:43:29,171 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2024-11-08 10:43:48] 2024-11-08 15:43:29,172 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2024-11-08 10:43:48] 2024-11-08 15:43:29,172 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2024-11-08 10:43:48] 2024-11-08 15:43:29,172 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2024-11-08 10:43:48] 2024-11-08 15:43:29,173 | INFO     | aborting loop
[2024-11-08 10:43:48] 2024-11-08 15:43:29,173 | INFO     | found 0 job(s) in 20 queues
[2024-11-08 10:43:48] 2024-11-08 15:43:29,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2024-11-08 10:43:48] 2024-11-08 15:43:29,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2024-11-08 10:43:48] 2024-11-08 15:43:29,561 | INFO     | all payload control threads have been joined
[2024-11-08 10:43:48] 2024-11-08 15:43:29,730 | INFO     | all data control threads have been joined
[2024-11-08 10:43:48] 2024-11-08 15:43:30,118 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2024-11-08 10:43:48] 2024-11-08 15:43:30,177 | INFO     | [job] retrieve thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:30,178 | INFO     | [job] job monitor thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:30,178 | INFO     | [job] queue monitor thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:30,234 | INFO     | all job control threads have been joined
[2024-11-08 10:43:48] 2024-11-08 15:43:30,246 | INFO     | [payload] validate_post thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:30,402 | INFO     | [data] copytool_in thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:30,566 | INFO     | [payload] control thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:30,722 | INFO     | [payload] execute_payloads thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:30,735 | INFO     | [data] control thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:30,921 | INFO     | [job] validate thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:31,069 | INFO     | [payload] validate_pre thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:31,138 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2024-11-08 10:43:48] 2024-11-08 15:43:31,240 | INFO     | [job] control thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:31,284 | INFO     | [payload] failed_post thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:31,313 | INFO     | [job] create_data_payload thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:32,122 | INFO     | [data] copytool_out thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:35,142 | INFO     | [data] queue_monitor thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:40,194 | INFO     | job.realtimelogging is not enabled
[2024-11-08 10:43:48] 2024-11-08 15:43:41,198 | INFO     | [payload] run_realtimelog thread has finished
[2024-11-08 10:43:48] 2024-11-08 15:43:42,919 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140486038132544)>', '<ExcThread(monitor, started 140485528106752)>']
[2024-11-08 10:43:48] 2024-11-08 15:43:43,241 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2024-11-08 10:43:48] 2024-11-08 15:43:43,241 | INFO     | [monitor] control thread has ended
[2024-11-08 10:43:48] 2024-11-08 15:43:47,945 | INFO     | all workflow threads have been joined
[2024-11-08 10:43:48] 2024-11-08 15:43:47,945 | INFO     | end of generic workflow (traces error code: 0)
[2024-11-08 10:43:48] 2024-11-08 15:43:47,945 | INFO     | traces error code: 0
[2024-11-08 10:43:48] 2024-11-08 15:43:47,945 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2024-11-08 10:43:48] 2024-11-08 15:43:48,033 [wrapper] ==== pilot stdout END ====
[2024-11-08 10:43:48] 2024-11-08 15:43:48,036 [wrapper] ==== wrapper stdout RESUME ====
[2024-11-08 10:43:48] 2024-11-08 15:43:48,038 [wrapper] pilotpid: 2317279
[2024-11-08 10:43:48] 2024-11-08 15:43:48,041 [wrapper] Pilot exit status: 0
[2024-11-08 10:43:48] 2024-11-08 15:43:48,130 [wrapper] pandaids: 6395538635
[2024-11-08 10:43:48] 2024-11-08 15:43:48,164 [wrapper] cleanup supervisor_pilot 2436960 2317280
[2024-11-08 10:43:48] 2024-11-08 15:43:48,167 [wrapper] Test setup, not cleaning
[2024-11-08 10:43:48] 2024-11-08 15:43:48,170 [wrapper] ==== wrapper stdout END ====
[2024-11-08 10:43:48] 2024-11-08 15:43:48,172 [wrapper] ==== wrapper stderr END ====
[2024-11-08 10:43:48] 2024-11-08 15:43:48,177 [wrapper] apfmon messages muted
[2024-11-08 10:43:48]  *** Error codes and diagnostics ***
[2024-11-08 10:43:48]     "exeErrorCode": 0,
[2024-11-08 10:43:48]     "exeErrorDiag": "",
[2024-11-08 10:43:48]     "pilotErrorCode": 0,
[2024-11-08 10:43:48]     "pilotErrorDiag": "",
[2024-11-08 10:43:48]  *** Listing of results directory ***
[2024-11-08 10:43:48] total 454836
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc    486088 Nov  8 08:08 pilot3.tar.gz
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc      5652 Nov  8 08:22 queuedata.json
[2024-11-08 10:43:48] -rwx------ 1 boinc boinc     34589 Nov  8 08:22 runpilot2-wrapper.sh
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc       100 Nov  8 09:43 wrapper_26015_x86_64-pc-linux-gnu
[2024-11-08 10:43:48] -rwxr-xr-x 1 boinc boinc      7986 Nov  8 09:43 run_atlas
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc       105 Nov  8 09:43 job.xml
[2024-11-08 10:43:48] -rw-r--r-- 2 boinc boinc    499786 Nov  8 09:43 input.tar.gz
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc      7599 Nov  8 09:43 init_data.xml
[2024-11-08 10:43:48] -rw-r--r-- 2 boinc boinc 267772016 Nov  8 09:43 EVNT.41944686._000115.pool.root.1
[2024-11-08 10:43:48] -rw-r--r-- 2 boinc boinc     17569 Nov  8 09:43 start_atlas.sh
[2024-11-08 10:43:48] drwxrwx--x 2 boinc boinc      4096 Nov  8 09:43 shared
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc         0 Nov  8 09:43 boinc_lockfile
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc      2628 Nov  8 09:43 pandaJob.out
[2024-11-08 10:43:48] -rw------- 1 boinc boinc       460 Nov  8 09:43 setup.sh.local
[2024-11-08 10:43:48] -rw------- 1 boinc boinc   1011227 Nov  8 09:44 agis_schedconf.cvmfs.json
[2024-11-08 10:43:48] -rw------- 1 boinc boinc   1597102 Nov  8 09:44 agis_ddmendpoints.agis.ALL.json
[2024-11-08 10:43:48] drwx------ 4 boinc boinc      4096 Nov  8 09:44 pilot3
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc       529 Nov  8 10:42 boinc_task_state.xml
[2024-11-08 10:43:48] -rw------- 1 boinc boinc 192684305 Nov  8 10:42 HITS.41944689._002871.pool.root.1
[2024-11-08 10:43:48] -rw------- 1 boinc boinc        95 Nov  8 10:43 pilot_heartbeat.json
[2024-11-08 10:43:48] -rw------- 1 boinc boinc      1034 Nov  8 10:43 memory_monitor_summary.json
[2024-11-08 10:43:48] -rw------- 1 boinc boinc    361036 Nov  8 10:43 log.41944689._002871.job.log.tgz.1
[2024-11-08 10:43:48] -rw------- 1 boinc boinc      7726 Nov  8 10:43 heartbeat.json
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc      8192 Nov  8 10:43 boinc_mmap_file
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc        27 Nov  8 10:43 wrapper_checkpoint.txt
[2024-11-08 10:43:48] -rw------- 1 boinc boinc      4418 Nov  8 10:43 pilotlog.txt
[2024-11-08 10:43:48] -rw------- 1 boinc boinc    362923 Nov  8 10:43 log.41944689._002871.job.log.1
[2024-11-08 10:43:48] -rw------- 1 boinc boinc       357 Nov  8 10:43 output.list
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc       620 Nov  8 10:43 runtime_log
[2024-11-08 10:43:48] -rw------- 1 boinc boinc    747520 Nov  8 10:43 result.tar.gz
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc     11473 Nov  8 10:43 runtime_log.err
[2024-11-08 10:43:48] -rw------- 1 boinc boinc       650 Nov  8 10:43 diJMDmx7dT6nsSi4ap6QjLDmwznN0nGgGQJmDC4LDm9CPNDmciERem.diag
[2024-11-08 10:43:48] -rw-r--r-- 1 boinc boinc     20889 Nov  8 10:43 stderr.txt
[2024-11-08 10:43:48] HITS file was successfully produced:
[2024-11-08 10:43:48] -rw------- 1 boinc boinc 192684305 Nov  8 10:42 shared/HITS.pool.root.1
[2024-11-08 10:43:48]  *** Contents of shared directory: ***
[2024-11-08 10:43:48] total 450924
[2024-11-08 10:43:48] -rw-r--r-- 2 boinc boinc    499786 Nov  8 09:43 input.tar.gz
[2024-11-08 10:43:48] -rw-r--r-- 2 boinc boinc 267772016 Nov  8 09:43 ATLAS.root_0
[2024-11-08 10:43:48] -rw-r--r-- 2 boinc boinc     17569 Nov  8 09:43 start_atlas.sh
[2024-11-08 10:43:48] -rw------- 1 boinc boinc 192684305 Nov  8 10:42 HITS.pool.root.1
[2024-11-08 10:43:48] -rw------- 1 boinc boinc    747520 Nov  8 10:43 result.tar.gz
10:43:50 (2311629): run_atlas exited; CPU time 30365.688246
10:43:50 (2311629): called boinc_finish(0)

</stderr_txt>
]]>

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